Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 3.2e-171 605.1 339 100.0
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 4.6e-125 451.8 339 69.3
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 7.8e-125 451.1 339 70.2
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 1.5e-123 446.8 276 83.3
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 8.0e-122 441.0 351 65.5
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.1e-121 440.7 339 69.0
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 5.2e-121 438.3 339 69.0
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 5.8e-120 434.9 343 63.8
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 6.4e-119 431.4 343 72.6
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 1.1e-118 430.6 314 66.2
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 6.0e-117 424.9 299 73.2
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 6.0e-117 424.9 299 73.2
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.9e-115 419.9 295 76.3
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 4.3e-115 418.7 318 69.2
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 1.2e-114 417.2 306 71.9
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 1.2e-114 417.2 324 71.6
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 2.8e-114 416.0 334 67.7
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 4.7e-114 415.2 326 65.3
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 1.1e-113 414.1 324 71.3
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 9.9e-112 407.5 333 67.3
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 9.9e-112 407.5 331 65.6
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 1.3e-111 407.1 272 77.6
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 1.3e-111 407.1 326 67.2
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 3.7e-111 405.6 343 65.6
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 1.4e-110 403.7 339 65.2
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 1.9e-110 403.3 327 65.4
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 3.5e-109 399.1 341 65.4
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 4.6e-109 398.7 338 63.9
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 1.7e-108 396.7 323 62.5
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 2.3e-108 396.4 354 62.1
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 1.2e-106 390.6 258 72.1
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 2.8e-106 389.4 335 62.4
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 3.6e-106 389.0 332 63.3
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 8.1e-106 387.9 331 64.0
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 6.8e-105 384.8 296 70.9
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 1.5e-104 383.6 296 69.9
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 5.8e-104 381.7 339 62.2
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 7.6e-104 381.3 339 65.8
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 1.3e-103 380.6 337 59.3
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 8.4e-103 377.9 336 64.0
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 8.4e-103 377.9 258 74.4
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 2.4e-102 376.3 296 65.9
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 9.2e-102 374.4 292 65.1
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 3.5e-101 372.5 327 59.9
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 4.6e-101 372.1 338 63.3
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 3.3e-99 365.9 312 68.3
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 4.3e-99 365.5 293 64.5
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 7.3e-99 364.8 349 57.9
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 2.4e-97 359.8 340 58.2
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 2.6e-96 356.3 238 71.8
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 7.6e-96 354.8 303 64.7
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 1.7e-95 353.6 321 54.8
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 4.9e-95 352.1 322 61.8
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 1.1e-94 350.9 240 73.3
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.0e-92 344.4 322 63.0
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 3.9e-92 342.4 336 64.6
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 6.6e-92 341.7 335 64.2
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 8.7e-92 341.3 336 64.6
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 1.5e-91 340.5 336 64.3
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 4.3e-91 339.0 337 61.7
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 5.6e-91 338.6 240 68.8
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 5.6e-91 338.6 251 62.5
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 7.3e-91 338.2 336 62.8
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 1.6e-90 337.0 336 64.0
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 2.8e-90 336.3 336 63.4
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.4e-89 334.0 218 73.9
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 1.8e-89 333.6 255 62.4
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 4.0e-89 332.4 212 77.8
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 1.7e-87 327.0 336 61.9
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 1.9e-86 323.6 339 62.2
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 5.1e-84 315.5 333 59.8
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 1.1e-83 314.3 323 53.6
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 1.9e-83 313.5 311 53.1
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 3.3e-83 312.8 212 73.6
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 3.3e-83 312.8 264 66.3
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 1.1e-81 307.8 206 79.1
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 5.3e-81 305.4 234 75.2
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 5.8e-80 302.0 244 58.6
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 1.4e-78 297.4 317 54.3
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 2.5e-78 296.6 252 59.1
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 1.6e-77 293.9 205 67.8
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 2.3e-76 290.0 340 54.4
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 8.7e-76 288.1 259 69.9
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 8.7e-76 288.1 382 51.6
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 2.1e-74 283.5 341 49.3
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 3.4e-72 276.2 206 69.4
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 5.8e-72 275.4 329 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 3.2e-70 269.6 283 51.6
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 1.6e-69 267.3 241 63.9
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 1.9e-67 260.4 323 48.0
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 1.9e-67 260.4 339 49.3
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 7.4e-67 258.5 174 70.1
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 1.1e-65 254.6 229 62.0
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 1.7e-63 247.3 290 48.6
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 2.9e-63 246.5 350 50.9
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 1.9e-62 243.8 219 66.2
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 2.7e-61 240.0 360 49.2
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 8.2e-58 228.4 273 55.3
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 7.7e-56 221.9 193 60.6
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 1.9e-54 217.2 230 55.2
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 3.2e-54 216.5 324 43.2
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 3.0e-52 209.9 147 77.6
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 5.7e-51 205.7 202 60.4
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 3.1e-49 199.9 167 68.3
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.5e-48 197.6 242 48.3
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 1.7e-47 194.1 238 52.9
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 9.4e-46 188.3 158 63.3
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 8.8e-44 181.8 280 41.1
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 5.7e-43 179.1 124 66.9
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 4.8e-42 176.0 275 41.5
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 1.7e-39 167.5 190 60.0
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 3.2e-38 163.3 343 36.4
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 7.2e-38 162.2 167 61.1
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 2.1e-37 160.6 153 56.2
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 7.5e-35 152.1 275 38.2
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 1.4e-33 147.9 105 70.5
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 9.4e-30 135.2 91 71.4
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.6e-29 134.4 91 71.4
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 8.0e-29 132.1 91 70.3
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 6.8e-28 129.0 91 67.0
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 7.5e-27 125.6 273 33.0
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 1.0e-23 115.2 101 56.4
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 3.8e-23 113.2 97 60.8
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 3.3e-22 110.2 121 52.1
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 9.8e-19 98.6 118 50.8
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 4.9e-18 96.3 56 82.1
Hma1.2p1_0800F.1_g220000 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.8e-17 94.4 68 67.6
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 4.1e-17 93.2 88 59.1
Haze_27155 Corylus avellana HOM05D003386 ORTHO05D007535 1.0e-15 88.6 191 39.8
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 6.6e-15 85.9 51 82.4
CsaV3_UNG066540 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.6e-13 81.3 65 61.5
BraA01t00799Z Brassica rapa HOM05D006034 ORTHO05D007535 4.7e-13 79.7 121 45.5
arahy.Tifrunner.gnm1.ann1.C7GQ4M Arachis hypogaea HOM05D006034 ORTHO05D007535 3.4e-11 73.6 55 65.5
Dinv36751 Davidia involucrata HOM05D006034 ORTHO05D007535 3.7e-10 70.1 51 62.7


User provided reference genes

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