Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G216900 Carya illinoinensis HOM05D006771 ORTHO05D008296 5.5e-306 1053.5 547 100.0
Cfa003093 Carpinus fangiana HOM05D006771 ORTHO05D008296 4.0e-147 525.8 522 58.6
QL02p062800 Quercus lobata HOM05D006771 ORTHO05D008296 1.3e-142 510.8 612 51.6
Dinv36762 Davidia involucrata HOM05D006771 ORTHO05D008296 1.1e-101 374.8 628 42.4
TAR624G0646 Trochodendron aralioides HOM05D006771 ORTHO05D008296 2.4e-91 340.5 711 37.7
Potri.006G151100 Populus trichocarpa HOM05D006771 ORTHO05D008296 7.4e-85 318.9 621 37.2
CANSAT56G0603 Cannabis sativa HOM05D006771 ORTHO05D008296 3.5e-82 310.1 544 40.8
Prupe.7G210300 Prunus persica HOM05D006771 ORTHO05D008296 1.0e-81 308.5 630 37.9
TWI63G0991 Tripterygium wilfordii HOM05D006771 ORTHO05D008296 3.2e-80 303.5 623 38.2
Duzib187G1830 Durio zibethinus HOM05D006771 ORTHO05D008296 7.2e-80 302.4 645 36.7
Thecc.09G090100 Theobroma cacao HOM05D006771 ORTHO05D008296 1.6e-79 301.2 622 37.5
GSVIVG01015209001 Vitis vinifera HOM05D006771 ORTHO05D008296 5.7e-77 292.7 626 37.1
Eucgr.C03893 Eucalyptus grandis HOM05D006771 ORTHO05D008296 3.2e-72 276.9 583 35.0
Gohir.D06G070900 Gossypium hirsutum HOM05D006771 ORTHO05D008296 1.2e-71 275.0 601 36.3
Eucgr.C03649 Eucalyptus grandis HOM05D006771 ORTHO05D008296 2.7e-71 273.9 595 35.3
RcHm_v2.0_Chr2g0093251 Rosa chinensis HOM05D006771 ORTHO05D008296 2.7e-71 273.9 599 35.4
Gorai.010G082600 Gossypium raimondii HOM05D006771 ORTHO05D008296 6.8e-70 269.2 604 35.8
Gohir.A06G072300 Gossypium hirsutum HOM05D006771 ORTHO05D008296 8.8e-70 268.9 614 36.6
FvH4_1g07370 Fragaria vesca HOM05D006771 ORTHO05D008296 2.8e-68 263.8 617 34.7
Manes.03G033100 Manihot esculenta HOM05D006771 ORTHO05D008296 1.1e-67 261.9 579 34.9
FAN26G3254 Fragaria x ananassa HOM05D006771 ORTHO05D008296 1.6e-66 258.1 619 34.4
FAN26G2123 Fragaria x ananassa HOM05D006771 ORTHO05D008296 2.7e-66 257.3 619 34.1
Sabra06G0119600 Salix brachista HOM05D006771 ORTHO05D008296 3.5e-66 256.9 680 33.4
MD15G1206500 Malus domestica HOM05D006771 ORTHO05D008296 6.5e-65 252.7 630 34.6
Nn8g38880 Nelumbo nucifera HOM05D006771 ORTHO05D008296 1.1e-64 251.9 649 33.0
FAN23G2606 Fragaria x ananassa HOM05D006771 ORTHO05D008296 3.2e-64 250.4 618 34.0
FAN28G0978 Fragaria x ananassa HOM05D006771 ORTHO05D008296 1.6e-63 248.1 641 32.8
Ciclev10010605m.g Citrus clementina HOM05D006771 ORTHO05D008296 3.0e-62 243.8 609 34.2
FAN19G1581 Fragaria x ananassa HOM05D006771 ORTHO05D008296 5.7e-61 239.6 620 32.9
ClCG11G001770 Citrullus lanatus HOM05D006771 ORTHO05D008296 2.2e-60 237.7 618 35.0
COL.COLO4_18206 Corchorus olitorius HOM05D006771 ORTHO05D008296 2.2e-60 237.7 619 33.8
TPR.G35458 Trifolium pratense HOM05D006771 ORTHO05D008296 4.9e-60 236.5 602 33.9
vmacro23430 Vaccinium macrocarpon HOM05D006771 ORTHO05D008296 4.9e-60 236.5 684 30.4
Sed0013958 Sechium edule HOM05D006771 ORTHO05D008296 3.1e-59 233.8 626 32.4
arahy.Tifrunner.gnm1.ann1.H0G9IY Arachis hypogaea HOM05D006771 ORTHO05D008296 5.4e-59 233.0 550 34.5
vmacro06287 Vaccinium macrocarpon HOM05D006771 ORTHO05D008296 1.0e-57 228.8 698 29.5
Medtr2g038710 Medicago truncatula HOM05D006771 ORTHO05D008296 6.6e-57 226.1 612 32.8
Psat1g141720 Pisum sativum HOM05D006771 ORTHO05D008296 4.3e-56 223.4 582 33.5
arahy.Tifrunner.gnm1.ann1.LUTY24 Arachis hypogaea HOM05D006771 ORTHO05D008296 1.6e-55 221.5 554 33.2
CsaV3_2G001480 Cucumis sativus L. HOM05D006771 ORTHO05D008296 2.1e-55 221.1 593 32.9
PGR102G2735 Punica granatum HOM05D006771 ORTHO05D008296 7.0e-51 206.1 605 31.1
Phvul.009G232800 Phaseolus vulgaris HOM05D006771 ORTHO05D008296 2.7e-50 204.1 421 38.0
Atru.chr7.1582 Acer truncatum HOM05D006771 ORTHO05D008296 4.6e-50 203.4 454 37.4
Glyma.15G169200 Glycine max HOM05D006771 ORTHO05D008296 5.9e-50 203.0 330 42.4
Oeu042645.4 Olea europaea HOM05D006771 ORTHO05D008296 5.9e-50 203.0 549 32.8
DCAR_031968 Daucus carota HOM05D006771 ORTHO05D008296 7.8e-50 202.6 643 32.3
Glyma.09G062700 Glycine max HOM05D006771 ORTHO05D008296 3.3e-48 197.2 427 36.3
SalBow1G1031 Salvia bowleyana HOM05D006771 ORTHO05D008296 9.5e-48 195.7 630 29.8
Duzib168G0935 Durio zibethinus HOM05D006771 ORTHO05D008296 2.0e-45 188.0 541 32.3
Aqoxy7G01223_Aqoxy7G01224 Aquilegia oxysepala HOM05D006771 ORTHO05D008296 3.7e-44 183.7 811 26.9
Rhsim03G0232900 Rhododendron simsii HOM05D006771 ORTHO05D008296 4.6e-42 176.8 621 29.1
Actinidia29883 Actinidia chinensis HOM05D006771 ORTHO05D008296 6.0e-42 176.4 352 38.4
CSS0032707 Camellia sinensis var. sinensis HOM05D006771 ORTHO05D008296 3.0e-41 174.1 501 30.9
Lalb_Chr08g0232051 Lupinus albus HOM05D006771 ORTHO05D008296 1.1e-40 172.2 199 50.8
Lj6g0004334 Lotus japonicus HOM05D006771 ORTHO05D008296 4.3e-40 170.2 548 29.0
DCAR_024688 Daucus carota HOM05D006771 ORTHO05D008296 5.6e-40 169.9 519 31.6
HanXRQChr12g0354831 Helianthus annuus HOM05D006771 ORTHO05D008296 9.5e-40 169.1 553 28.8
Solyc07g039190.4 Solanum lycopersicum HOM05D006771 ORTHO05D008296 3.6e-39 167.2 626 29.9
Gohir.A07G010700 Gossypium hirsutum HOM05D006771 ORTHO05D008296 4.7e-39 166.8 163 58.9
Gohir.D07G011000 Gossypium hirsutum HOM05D006771 ORTHO05D008296 2.3e-38 164.5 163 58.3
PGSC0003DMG401013152 Solanum tuberosum HOM05D006771 ORTHO05D008296 2.3e-38 164.5 638 29.3
Cpa.g.sc93.24 Carica papaya HOM05D006771 ORTHO05D008296 4.0e-38 163.7 600 29.3
Ca_02153_v3 Cicer arietinum L. HOM05D006771 ORTHO05D008296 5.2e-38 163.3 306 37.9
Gorai.001G011400 Gossypium raimondii HOM05D006771 ORTHO05D008296 5.2e-38 163.3 163 57.7
Cc06_g11360 Coffea canephora HOM05D006771 ORTHO05D008296 8.9e-38 162.5 326 36.8
ECA234G3532 Erigeron canadensis HOM05D006771 ORTHO05D008296 4.4e-37 160.2 668 27.1
MBI04_g34126_MAGBIO Magnolia biondii HOM05D006771 ORTHO05D008296 1.7e-36 158.3 558 29.6
CAN.G235.1 Capsicum annuum HOM05D006771 ORTHO05D008296 2.9e-36 157.5 634 28.7
Lsat_1_v5_gn_5_142241 Lactuca sativa HOM05D006771 ORTHO05D008296 1.1e-35 155.6 628 27.4
Nitab4.5_0005033g0010 Nicotiana tabacum HOM05D006771 ORTHO05D008296 3.2e-35 154.1 121 66.1
PSO832G0455 Papaver somniferum HOM05D006771 ORTHO05D008296 4.1e-35 153.7 213 46.9
Migut.L01489 Erythranthe guttata HOM05D006771 ORTHO05D008296 5.4e-35 153.3 242 40.9
Ah.14g085210 Amaranthus hybridus HOM05D006771 ORTHO05D008296 9.2e-35 152.5 149 56.4
AT5G56850 Arabidopsis thaliana HOM05D006771 ORTHO05D008296 2.7e-34 151.0 549 27.5
MELO3C004623.2 Cucumis melo HOM05D006771 ORTHO05D008296 3.5e-34 150.6 511 28.8
Sp6g18570 Schrenkiella parvula HOM05D006771 ORTHO05D008296 1.0e-33 149.1 575 27.1
AL8G32700 Arabidopsis lyrata HOM05D006771 ORTHO05D008296 1.3e-33 148.7 572 27.6
VMungo1309G1333 Vigna mungo HOM05D006771 ORTHO05D008296 4.3e-32 143.7 453 31.3
Sc18g0002030 Simmondsia chinensis HOM05D006771 ORTHO05D008296 9.5e-32 142.5 135 57.0
PSO063G0725 Papaver somniferum HOM05D006771 ORTHO05D008296 1.2e-31 142.1 183 47.0
BcaB01g04422 Brassica carinata HOM05D006771 ORTHO05D008296 3.6e-31 140.6 548 27.9
A03p13130 Brassica napus HOM05D006771 ORTHO05D008296 1.1e-30 139.0 559 27.2
BolC3t13977H Brassica oleracea HOM05D006771 ORTHO05D008296 1.8e-30 138.3 559 27.2
CDE06G0351 Ceratophyllum demersum HOM05D006771 ORTHO05D008296 1.8e-30 138.3 350 32.0
C03p15350 Brassica napus HOM05D006771 ORTHO05D008296 4.0e-30 137.1 559 27.0
Nitab4.5_0005634g0020 Nicotiana tabacum HOM05D006771 ORTHO05D008296 5.2e-30 136.7 163 48.5
Thhalv10013398m.g Eutrema salsugineum HOM05D006771 ORTHO05D008296 1.7e-28 131.7 533 29.3
AUR62027498 Chenopodium quinoa HOM05D006771 ORTHO05D008296 2.9e-28 131.0 374 31.8
HanXRQChr10g0319291 Helianthus annuus HOM05D006771 ORTHO05D008296 6.4e-28 129.8 554 27.8
BraA03t10624Z Brassica rapa HOM05D006771 ORTHO05D008296 2.4e-27 127.9 564 26.4
Peaxi162Scf01121g00112 Petunia axillaris HOM05D006771 ORTHO05D008296 5.4e-27 126.7 169 43.8
CSS0016785 Camellia sinensis var. sinensis HOM05D006771 ORTHO05D008296 3.5e-26 124.0 451 28.2
Carub.0008s1731 Capsella rubella HOM05D006771 ORTHO05D008296 6.0e-26 123.2 468 27.4
Hund06680 Selenicereus undatus HOM05D006771 ORTHO05D008296 1.8e-22 111.7 182 39.0
SGA_v2.0_scaffold21G09363 Striga asiatica HOM05D006771 ORTHO05D008296 4.0e-22 110.5 121 51.2
SEGI_22775 Sequoiadendron giganteum HOM05D006771 ORTHO05D008296 5.8e-21 106.7 134 44.0
Haze_25906 Corylus avellana HOM05D006771 ORTHO05D008296 1.9e-19 101.7 67 76.1
unitig_699.g19301 Utricularia gibba HOM05D006771 ORTHO05D008296 2.1e-18 98.2 271 31.0
AagrBONN_evm.TU.Sc2ySwM_344.5001 Anthoceros agrestis HOM05D062329 ORTHO05D008296 2.7e-18 97.8 125 39.2
Cc06_g11350 Coffea canephora HOM05D006771 ORTHO05D008296 3.9e-17 94.0 163 36.2
Os05g0232200 Oryza sativa ssp. japonica HOM05D006771 ORTHO05D008296 5.1e-17 93.6 219 35.6
ATR0716G111 Amborella trichopoda HOM05D006771 ORTHO05D008296 2.1e-15 88.2 101 43.6
Zm00001eb345250 Zea mays HOM05D006771 ORTHO05D008296 2.8e-15 87.8 348 25.3
Pp3c15_7000 Physcomitrium patens HOM05D006771 ORTHO05D008296 6.9e-14 83.2 179 30.7
Actinidia29884 Actinidia chinensis HOM05D006771 ORTHO05D008296 2.6e-13 81.3 164 30.5
EL10Ac8g19225 Beta vulgaris HOM05D006771 ORTHO05D008296 1.3e-12 79.0 73 57.5
Mapoly0003s0143 Marchantia polymorpha HOM05D006771 ORTHO05D008296 4.9e-12 77.0 127 33.1
Pp3c9_2800 Physcomitrium patens HOM05D006771 ORTHO05D008296 8.4e-12 76.3 208 28.4
Pp3c9_2809 Physcomitrium patens HOM05D006771 ORTHO05D008296 8.4e-12 76.3 208 28.4
Sopen07g017540 Solanum pennellii HOM05D006771 ORTHO05D008296 7.9e-10 69.7 124 34.7
Aa31LG3G12750 Aethionema arabicum HOM05D006771 ORTHO05D008296 5.1e-09 67.0 456 24.1
Sc18g0002050 Simmondsia chinensis HOM05D006771 ORTHO05D008296 1.9e-08 65.1 208 29.3
SEGI_24756 Sequoiadendron giganteum HOM05D006771 ORTHO05D008296 1.1e-06 59.3 92 35.9
MD02G1078500 Malus domestica HOM05D006771 ORTHO05D008296 3.1e-06 57.8 268 25.4


User provided reference genes

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