Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 2.8e-103 378.6 191 100.0
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 2.3e-97 359.0 191 93.7
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 2.3e-97 359.0 190 92.6
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 2.6e-93 345.5 193 89.1
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 4.4e-93 344.7 194 89.2
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 5.8e-93 344.4 194 88.7
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.7e-92 342.8 198 88.9
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 2.9e-92 342.0 193 88.6
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 6.4e-92 340.9 194 89.2
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 1.1e-91 340.1 194 87.1
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 1.4e-91 339.7 194 87.1
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 2.4e-91 339.0 194 88.1
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 4.1e-91 338.2 191 86.9
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 5.4e-91 337.8 198 87.9
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.6e-90 336.3 191 88.0
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 1.6e-90 336.3 193 88.1
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 2.1e-90 335.9 194 88.1
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.1e-90 335.9 198 85.9
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.7e-90 335.5 191 88.0
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 3.5e-90 335.1 191 87.4
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 4.6e-90 334.7 191 87.4
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.3e-89 332.4 198 83.8
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 3.9e-89 331.6 199 85.4
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 8.6e-89 330.5 199 83.9
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.5e-88 329.7 192 86.5
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.9e-88 329.3 192 86.5
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 2.5e-88 328.9 201 82.1
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 4.3e-88 328.2 195 85.1
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 4.3e-88 328.2 194 83.0
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 5.6e-88 327.8 191 85.3
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 9.5e-88 327.0 194 85.1
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 1.2e-87 326.6 191 83.8
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.2e-87 326.6 195 84.1
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 2.8e-87 325.5 195 85.6
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.8e-87 325.5 200 82.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.8e-87 325.5 200 82.0
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 8.1e-87 323.9 198 80.8
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 8.1e-87 323.9 195 84.6
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 8.1e-87 323.9 194 84.5
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 1.1e-86 323.6 197 81.2
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.4e-86 323.2 198 84.8
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 1.8e-86 322.8 200 82.5
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.8e-86 322.8 193 85.0
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.3e-86 322.4 194 83.0
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.3e-86 322.4 194 83.0
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 3.1e-86 322.0 191 83.2
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 3.1e-86 322.0 194 83.0
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 4.0e-86 321.6 172 92.4
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 4.0e-86 321.6 192 81.2
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 5.2e-86 321.2 191 82.2
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 5.2e-86 321.2 194 82.5
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 6.8e-86 320.9 191 81.7
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 6.8e-86 320.9 200 81.0
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.5e-85 319.7 194 82.0
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.0e-85 319.3 196 80.1
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.6e-85 318.9 201 79.6
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.6e-85 318.9 201 80.1
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 7.6e-85 317.4 194 79.9
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 9.9e-85 317.0 191 82.2
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 9.9e-85 317.0 191 81.2
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 1.3e-84 316.6 194 80.4
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.3e-84 316.6 201 78.1
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.7e-84 316.2 203 80.3
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 2.9e-84 315.5 199 79.9
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.9e-84 315.5 203 77.3
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.8e-84 315.1 202 79.7
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 3.8e-84 315.1 201 80.1
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 4.9e-84 314.7 191 80.6
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.4e-84 314.3 192 82.8
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.4e-84 314.3 191 82.2
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 8.4e-84 313.9 191 83.8
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.1e-83 313.5 206 78.2
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.4e-83 313.2 193 80.3
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 1.9e-83 312.8 193 79.8
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.9e-83 312.8 214 75.2
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.2e-83 312.0 191 80.1
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 3.2e-83 312.0 191 80.6
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 3.2e-83 312.0 196 80.1
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 4.1e-83 311.6 199 77.4
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 4.1e-83 311.6 193 80.8
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 5.4e-83 311.2 199 77.4
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 5.4e-83 311.2 191 80.1
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 7.1e-83 310.8 193 79.8
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 7.1e-83 310.8 199 76.9
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 7.1e-83 310.8 191 80.1
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 7.1e-83 310.8 196 80.6
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 9.2e-83 310.5 191 81.7
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.6e-82 309.7 199 77.4
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 2.7e-82 308.9 204 75.5
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 2.7e-82 308.9 194 82.0
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 3.5e-82 308.5 194 80.9
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 3.5e-82 308.5 191 80.6
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.3e-81 306.6 191 79.1
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.3e-81 306.6 199 77.4
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.7e-81 306.2 199 76.4
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.7e-81 306.2 198 79.3
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 5.1e-81 304.7 197 77.2
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 5.1e-81 304.7 197 77.2
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 8.6e-81 303.9 199 76.4
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 8.6e-81 303.9 240 67.9
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 1.1e-80 303.5 196 76.0
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.5e-80 303.1 207 74.4
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 1.9e-80 302.8 199 76.4
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 1.9e-80 302.8 199 76.4
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.3e-80 302.0 186 83.3
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 3.3e-80 302.0 196 75.5
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 5.6e-80 301.2 199 75.9
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 9.6e-80 300.4 198 75.8
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 1.2e-79 300.1 199 78.4
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 1.2e-79 300.1 192 79.2
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 6.2e-79 297.7 180 83.3
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 8.1e-79 297.4 194 77.8
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.4e-78 295.8 174 85.6
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 3.1e-78 295.4 200 75.0
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 4.0e-78 295.0 200 75.0
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 6.9e-78 294.3 223 70.0
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 8.9e-78 293.9 198 75.8
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 1.5e-77 293.1 198 76.3
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 1.5e-77 293.1 202 75.2
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 4.4e-77 291.6 198 75.3
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 4.4e-77 291.6 182 80.8
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.7e-76 289.7 201 75.6
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 4.9e-76 288.1 212 71.7
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.9e-75 286.2 175 81.7
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 9.3e-75 283.9 193 74.1
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 2.3e-73 279.3 212 69.3
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 5.1e-73 278.1 180 78.3
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 5.1e-73 278.1 192 74.0
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.9e-72 276.2 197 67.5
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 1.3e-71 273.5 186 72.6
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 8.1e-71 270.8 192 67.2
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.1e-70 270.4 205 69.8
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 5.3e-70 268.1 213 67.6
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 2.6e-69 265.8 237 63.3
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 4.2e-67 258.5 183 69.4
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 4.2e-67 258.5 184 67.4
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.0e-65 253.8 187 72.2
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 1.0e-65 253.8 182 70.3
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 2.5e-64 249.2 175 68.0
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 1.3e-63 246.9 177 72.3
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 3.1e-62 242.3 191 66.0
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 1.2e-61 240.4 198 61.6
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 1.9e-59 233.0 201 61.7
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 4.8e-55 218.4 153 72.5
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 7.1e-51 204.5 116 90.5
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.3e-48 195.7 116 83.6
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 2.0e-45 186.4 174 58.0
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 4.2e-43 178.7 99 91.9
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 5.1e-41 171.8 98 88.8
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 2.8e-39 166.0 188 54.8
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 3.7e-39 165.6 98 85.7
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 5.0e-36 155.2 98 77.6
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 6.3e-31 138.3 194 47.9
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.8e-30 136.7 79 82.3
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 9.1e-30 134.4 70 95.7
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.7e-28 130.2 70 78.6
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 2.9e-28 129.4 196 44.9
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.8e-28 129.0 110 65.5
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 1.1e-24 117.5 192 38.5
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 7.4e-24 114.8 187 39.0
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 1.4e-22 110.5 100 65.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 2.2e-20 103.2 191 40.3
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.6e-18 97.1 71 70.4
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 2.1e-18 96.7 191 39.3
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 8.0e-18 94.7 70 62.9
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 6.7e-17 91.7 54 72.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 8.8e-17 91.3 63 69.8
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 5.3e-14 82.0 166 34.9
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.6e-13 80.5 51 78.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.7e-13 79.7 53 75.5
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 6.5e-12 75.1 60 63.3
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.8e-09 67.0 72 54.2
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.4e-06 57.4 57 59.6


User provided reference genes

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