Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 2021.5 1090 100.0
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1825.1 1091 89.9
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1789.6 1119 87.1
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1745.3 1119 85.6
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1726.5 1195 81.1
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1653.6 1093 80.7
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1652.5 1071 80.9
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1648.6 1094 78.5
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1636.3 1095 78.4
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1629.0 1082 79.9
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1626.7 1079 80.5
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1623.6 1095 80.7
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1621.7 1090 79.9
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1621.7 1095 81.9
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1619.4 1088 81.4
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1619.4 1088 80.9
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1618.6 1104 80.5
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1614.4 1094 80.6
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1608.6 1092 79.9
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1607.4 1075 78.5
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1606.3 1098 81.1
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1606.3 1090 80.2
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1605.9 1089 80.8
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1603.6 1079 79.5
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1601.6 1075 80.4
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1601.3 1095 79.5
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1600.9 1090 80.6
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1599.7 1091 79.9
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1598.6 1089 79.8
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1595.9 1085 80.4
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1594.7 1095 77.3
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1590.1 1076 80.8
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1588.2 1095 77.5
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1588.2 1095 77.5
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1587.4 1132 76.9
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1582.0 1112 77.2
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1582.0 1094 76.1
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1581.6 1089 79.1
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1579.3 1093 77.7
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1578.9 1089 78.8
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1573.9 1096 77.8
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1569.3 1114 74.6
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1565.8 1096 79.1
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1555.0 1098 78.3
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1553.5 1099 74.4
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1551.6 1101 76.4
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1539.2 1052 78.7
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1537.7 1093 77.0
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1520.8 1096 73.8
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1516.9 1095 74.2
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1514.2 868 86.9
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1506.1 1094 73.8
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1505.0 869 85.7
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1503.8 869 85.5
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1503.4 869 85.6
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1487.6 1086 73.7
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1478.4 1084 72.7
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1473.0 976 75.8
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1453.7 1093 71.5
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1452.6 1050 74.6
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1447.6 1096 72.2
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1445.6 1097 71.5
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1442.2 1046 74.0
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1439.5 945 77.0
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1438.3 1083 71.6
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1437.6 1106 71.0
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1433.3 1074 70.9
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1431.8 1111 70.0
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1431.4 1090 72.2
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1430.6 869 82.3
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1419.1 945 75.1
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1418.7 945 74.6
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1416.4 976 74.3
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1414.4 1096 74.5
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1411.0 1103 71.0
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1407.9 1088 68.7
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1400.6 945 74.5
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1400.6 945 74.5
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1399.8 1094 68.6
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1399.4 945 74.4
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1399.4 945 74.4
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1383.6 1115 68.8
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1381.3 1130 68.1
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1376.3 1149 69.1
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1375.1 1092 67.8
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1362.1 1092 67.9
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1359.4 1053 70.4
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1345.1 1112 65.5
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1344.7 1191 62.6
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1343.6 1054 70.1
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1340.5 1077 66.1
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1327.0 1055 67.0
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1306.2 899 74.0
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1283.5 1097 67.5
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1281.5 1250 57.8
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1280.4 1049 65.4
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1276.9 873 72.5
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1217.2 1069 60.6
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1207.2 872 68.0
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1190.6 928 65.7
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1125.9 1093 58.5
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 0.0e+00 1109.0 692 79.9
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 0.0e+00 1108.6 690 80.0
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 1.5e-299 1033.1 1091 56.4
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 2.3e-279 966.1 744 63.8
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 4.5e-275 951.8 1096 54.4
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 1.0e-274 950.7 546 84.8
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 5.5e-273 944.9 690 70.6
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 1.4e-255 887.1 627 72.6
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 6.0e-195 685.6 570 62.3
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 7.9e-179 632.1 522 71.3
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 8.8e-162 575.5 448 65.2
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 9.7e-153 545.4 318 84.3
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 3.6e-123 447.2 368 60.1
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.1e-122 444.1 450 55.6
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 3.2e-119 434.1 407 66.3
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 6.4e-112 409.8 393 63.9
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 5.6e-108 396.7 233 85.4
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 5.8e-105 386.7 230 83.9
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.1e-103 382.5 276 72.5
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 1.7e-93 348.6 1026 28.1
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 1.7e-93 348.6 324 57.7
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 1.3e-88 332.4 198 84.3
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 6.9e-82 310.1 1023 26.8
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 1.4e-66 259.2 134 92.5
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 2.2e-64 251.9 190 65.3
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 4.1e-58 231.1 374 38.2
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.6e-54 219.2 145 71.7
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 2.7e-46 191.8 99 89.9
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 8.0e-46 190.3 243 50.2
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 2.8e-43 181.8 107 83.2
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 3.1e-42 178.3 198 47.0
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.9e-41 174.1 149 61.1
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 7.7e-41 173.7 234 41.5
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 1.6e-38 166.0 237 45.1
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 3.6e-38 164.9 103 73.8
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 6.1e-38 164.1 484 29.3
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.0e-37 163.3 108 75.0
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 1.0e-37 163.3 89 86.5
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 4.1e-34 151.4 121 62.0
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 5.9e-33 147.5 117 60.7
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 2.2e-32 145.6 149 55.7
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 1.5e-31 142.9 149 55.0
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.6e-30 139.4 93 76.3
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 2.1e-30 139.0 302 41.1
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 2.7e-30 138.7 86 82.6
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 3.1e-26 125.2 108 61.1
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 3.1e-26 125.2 108 61.1
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 3.1e-26 125.2 108 61.1
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 3.3e-23 115.2 79 67.1
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.2e-20 106.7 61 80.3
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 8.3e-19 100.5 97 60.8
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.4e-18 99.8 59 78.0
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.1e-18 98.6 130 45.4
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.0e-18 97.4 61 70.5
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.6e-17 96.3 79 58.2
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 1.5e-15 89.7 51 82.4
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.3e-15 87.4 61 67.2
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 1.2e-14 86.7 47 91.5
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.6e-14 86.3 67 62.7
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 6.8e-13 80.9 108 46.3
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 8.9e-13 80.5 218 32.6
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 1.2e-12 80.1 76 57.9
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 2.9e-11 75.5 76 55.3
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 6.4e-11 74.3 94 56.4
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.6e-09 68.2 51 60.8
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 6.0e-09 67.8 188 34.6
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 7.8e-09 67.4 66 50.0
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 2.3e-08 65.9 63 52.4
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 1.9e-07 62.8 334 21.9
A07p06220 Brassica napus HOM05D003881 ORTHO05D004343 3.3e-07 62.0 71 47.9
Actinidia38474 Actinidia chinensis HOM05D003881 ORTHO05D004343 2.1e-06 59.3 56 67.9
SEGI_25641 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.0e-06 57.4 38 71.1


User provided reference genes

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