Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 3.0e-103 378.6 210 100.0
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 1.5e-89 333.2 210 86.7
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 1.3e-85 320.1 209 84.2
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 1.2e-83 313.5 211 80.1
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 3.9e-82 308.5 210 78.6
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 1.1e-81 307.0 210 79.5
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 3.3e-81 305.4 211 77.7
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 2.8e-80 302.4 210 77.6
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 6.8e-79 297.7 210 77.6
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 2.9e-77 292.4 210 76.2
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.1e-76 290.4 210 76.2
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 1.6e-75 286.6 210 74.8
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 2.7e-75 285.8 210 74.3
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 2.7e-75 285.8 213 77.5
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 3.5e-75 285.4 210 74.3
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 3.5e-75 285.4 209 77.5
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 4.6e-75 285.0 210 75.2
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 4.6e-75 285.0 210 74.3
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 7.8e-75 284.3 210 74.8
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 1.0e-74 283.9 213 76.1
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 3.0e-74 282.3 210 73.8
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 5.1e-74 281.6 210 72.9
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 6.6e-74 281.2 211 73.5
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 1.1e-73 280.4 208 74.0
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 2.5e-73 279.3 207 72.9
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 3.3e-73 278.9 198 76.3
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 4.3e-73 278.5 208 73.6
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 6.2e-72 274.6 213 72.8
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 6.2e-72 274.6 208 72.1
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 8.1e-72 274.2 207 72.0
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 1.4e-71 273.5 204 75.5
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 1.5e-70 270.0 210 71.9
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 1.5e-70 270.0 208 71.6
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 4.4e-70 268.5 207 70.5
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 9.9e-70 267.3 210 70.0
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 2.2e-69 266.2 208 69.2
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 2.4e-68 262.7 210 71.9
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 3.2e-68 262.3 183 76.0
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 3.2e-68 262.3 212 72.6
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 5.4e-68 261.5 209 70.3
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 7.1e-68 261.2 210 71.4
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 7.8e-67 257.7 208 67.3
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 1.0e-66 257.3 210 69.0
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 3.0e-66 255.8 210 68.6
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 1.9e-65 253.1 206 69.4
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 5.6e-65 251.5 210 68.1
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 4.0e-63 245.4 209 63.6
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 2.6e-62 242.7 208 65.4
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 3.4e-62 242.3 210 63.3
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 7.6e-62 241.1 208 64.9
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 4.9e-61 238.4 197 68.5
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 6.4e-61 238.0 208 67.3
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 1.6e-59 233.4 210 61.4
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 3.5e-59 232.3 210 63.3
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 6.6e-58 228.0 170 71.8
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 8.7e-58 227.6 159 73.0
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 1.5e-57 226.9 210 62.9
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 6.2e-56 221.5 210 62.9
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 8.4e-53 211.1 208 60.6
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 3.5e-51 205.7 184 62.5
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 2.2e-45 186.4 170 65.3
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 2.7e-43 179.5 202 52.0
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 4.6e-43 178.7 201 52.2
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 4.0e-39 165.6 210 49.0
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 8.4e-37 157.9 106 79.2
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 1.1e-36 157.5 106 78.3
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 5.0e-29 132.1 127 58.3
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 2.5e-28 129.8 106 64.2
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 7.9e-27 124.8 111 64.0
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 1.5e-22 110.5 207 38.6
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 6.5e-21 105.1 84 64.3
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 2.5e-20 103.2 94 60.6
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 1.4e-18 97.4 117 45.3
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 4.8e-16 89.0 175 38.9
SMO358G0701 Selaginella moellendorffii HOM05D016812 ORTHO05D010187 7.2e-12 75.1 182 34.6
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.2e-11 74.3 54 68.5
SEGI_14451 Sequoiadendron giganteum HOM05D003033 ORTHO05D003475 3.0e-10 69.7 155 34.8
Ciclev10030215m.g Citrus clementina HOM05D008087 ORTHO05D010187 4.4e-09 65.9 80 48.8
Aa31LG4G13290 Aethionema arabicum HOM05D008087 ORTHO05D010187 1.3e-08 64.3 122 41.0
Mapoly0038s0092 Marchantia polymorpha HOM05D016812 ORTHO05D010187 4.5e-06 55.8 199 29.6


User provided reference genes

Program Settings