Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 3.1e-169 599.4 598 100.0
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 3.4e-123 446.4 367 83.1
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 1.7e-122 444.1 367 82.8
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 2.4e-92 344.0 365 72.6
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 5.3e-92 342.8 365 72.3
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 1.5e-83 314.7 363 68.9
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 8.4e-82 308.9 370 66.5
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 1.0e-74 285.4 257 59.5
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 3.9e-71 273.5 319 71.8
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 1.5e-67 261.5 203 68.5
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 1.4e-65 255.0 369 61.0
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 3.2e-65 253.8 318 66.4
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 7.9e-64 249.2 264 52.3
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 5.7e-62 243.0 264 51.5
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 3.7e-61 240.4 366 50.0
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 8.2e-61 239.2 268 51.5
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.8e-60 238.0 350 46.0
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 5.3e-60 236.5 196 63.8
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 3.4e-59 233.8 314 65.6
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 4.5e-59 233.4 200 56.5
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 5.9e-59 233.0 264 50.0
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 1.1e-57 228.8 200 61.0
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 7.2e-57 226.1 213 55.4
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 6.7e-55 219.5 219 52.5
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 3.7e-53 213.8 215 52.6
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 3.1e-52 210.7 181 61.3
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 1.2e-51 208.8 206 55.8
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 1.7e-50 204.9 220 50.0
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 2.9e-50 204.1 215 51.2
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 5.0e-50 203.4 222 50.0
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 1.4e-49 201.8 218 50.0
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 4.2e-49 200.3 218 49.1
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 2.1e-48 198.0 195 54.9
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 7.9e-48 196.1 283 59.0
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 1.4e-47 195.3 218 49.1
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.8e-47 194.9 183 56.3
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 6.7e-47 193.0 246 45.1
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 2.6e-46 191.0 204 47.5
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 7.4e-46 189.5 174 56.9
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 1.2e-43 182.2 219 46.6
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 2.6e-43 181.0 184 49.5
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 3.5e-43 180.6 169 56.2
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 3.5e-43 180.6 169 56.2
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 4.5e-43 180.3 184 49.5
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 7.7e-43 179.5 203 46.8
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 2.9e-42 177.6 187 47.6
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 3.8e-42 177.2 211 47.9
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.5e-41 175.3 175 49.7
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 2.5e-41 174.5 205 50.2
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 4.2e-41 173.7 156 58.3
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 5.5e-41 173.3 209 49.3
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 5.5e-41 173.3 174 48.9
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 1.2e-40 172.2 176 49.4
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 2.7e-40 171.0 221 46.6
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 1.0e-39 169.1 209 48.8
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 2.3e-39 167.9 169 53.8
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 2.3e-39 167.9 198 47.0
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 2.3e-39 167.9 175 48.0
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 3.0e-39 167.5 178 52.8
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 4.0e-39 167.2 200 46.0
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 1.2e-38 165.6 151 53.0
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 2.0e-38 164.9 202 47.0
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 2.0e-38 164.9 201 45.3
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 3.3e-38 164.1 201 46.3
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 4.4e-38 163.7 224 43.8
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 7.5e-38 162.9 174 48.3
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 9.7e-38 162.5 287 44.6
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 1.3e-37 162.2 208 46.2
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 1.3e-37 162.2 175 46.9
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 6.3e-37 159.8 203 44.3
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 6.3e-37 159.8 203 43.3
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 6.3e-37 159.8 165 52.1
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 8.2e-37 159.5 195 44.6
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 8.2e-37 159.5 195 44.6
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 1.8e-36 158.3 195 44.6
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 3.1e-36 157.5 170 51.8
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 9.1e-36 156.0 201 44.8
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 9.1e-36 156.0 145 51.0
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 1.6e-35 155.2 203 43.3
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 1.6e-35 155.2 203 43.3
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 7.7e-35 152.9 172 44.8
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 1.0e-34 152.5 176 43.8
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 1.7e-34 151.8 174 44.3
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 2.2e-34 151.4 205 44.4
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 5.0e-34 150.2 199 42.2
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 1.2e-32 145.6 174 44.8
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 2.7e-32 144.4 219 45.7
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 6.1e-32 143.3 100 67.0
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 2.3e-31 141.4 176 46.6
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 8.8e-31 139.4 145 52.4
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 2.6e-30 137.9 210 41.0
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 5.7e-30 136.7 203 39.4
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 7.5e-30 136.3 200 42.0
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 1.7e-29 135.2 166 45.2
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.4e-28 132.1 223 42.2
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 1.8e-28 131.7 119 54.6
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 3.1e-28 131.0 214 38.3
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 4.1e-28 130.6 145 42.1
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 9.1e-28 129.4 192 38.5
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.2e-27 129.0 223 41.7
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 7.7e-27 126.3 173 39.9
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 1.7e-26 125.2 162 43.8
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 2.5e-25 121.3 164 42.1
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 5.5e-25 120.2 209 38.3
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 7.2e-25 119.8 174 43.1
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 1.6e-24 118.6 209 38.3
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 2.1e-24 118.2 174 42.5
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 2.1e-24 118.2 211 37.9
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 1.4e-23 115.5 189 37.0
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 3.0e-23 114.4 178 39.3
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 4.0e-23 114.0 210 38.6
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 2.0e-22 111.7 157 40.1
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 5.7e-22 110.2 210 39.0
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 1.0e-18 99.4 204 54.9
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 2.9e-18 97.8 93 48.4
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 5.0e-18 97.1 134 40.3
SEGI_12554 Sequoiadendron giganteum HOM05D006080 ORTHO05D007382 3.0e-10 71.2 135 32.6
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 4.7e-08 63.9 115 27.8
Psat7g154760 Pisum sativum HOM05D006080 ORTHO05D007382 4.7e-08 63.9 65 47.7
Hma1.2p1_3105F.1_g332750 Hydrangea macrophylla HOM05D006080 ORTHO05D007382 1.1e-07 62.8 91 40.7
Eucgr.C00807 Eucalyptus grandis HOM05D006080 ORTHO05D007382 1.8e-07 62.0 51 58.8
Peaxi162Scf01290g00029 Petunia axillaris HOM05D006080 ORTHO05D007382 4.0e-07 60.8 90 41.1
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 8.9e-07 59.7 184 25.0
C05p18020 Brassica napus HOM05D002646 ORTHO05D002782 1.2e-06 59.3 111 27.0
Atru.BG.296.p Acer truncatum HOM05D005973 ORTHO05D007285 2.0e-06 58.5 131 26.0
BcaB07g31981 Brassica carinata HOM05D002646 ORTHO05D002782 2.6e-06 58.2 107 28.0
A06p15700 Brassica napus HOM05D002646 ORTHO05D002782 2.6e-06 58.2 107 27.1
BraA06t24679Z Brassica rapa HOM05D002646 ORTHO05D002782 2.6e-06 58.2 107 27.1
Sp1g17390 Schrenkiella parvula HOM05D002646 ORTHO05D002782 2.6e-06 58.2 107 29.0
SEGI_26115 Sequoiadendron giganteum HOM05D006819 ORTHO05D008763 2.6e-06 58.2 163 24.5
Lj3g0002161 Lotus japonicus HOM05D005973 ORTHO05D007285 3.4e-06 57.8 138 24.6
Gohir.A05G033900 Gossypium hirsutum HOM05D006080 ORTHO05D007382 9.8e-06 56.2 52 48.1
Medtr3g023180 Medicago truncatula HOM05D005973 ORTHO05D007285 9.8e-06 56.2 138 23.9


User provided reference genes

Program Settings