Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G198900 Carya illinoinensis HOM05D006517 ORTHO05D007886 6.9e-170 600.5 293 100.0
QL11p003516 Quercus lobata HOM05D006517 ORTHO05D007886 6.1e-134 481.1 291 82.1
Cfa010680 Carpinus fangiana HOM05D006517 ORTHO05D007886 6.7e-133 477.6 292 80.5
Glyma.13G116000 Glycine max HOM05D006517 ORTHO05D007886 2.7e-118 429.1 288 74.0
Lalb_Chr13g0299091 Lupinus albus HOM05D006517 ORTHO05D007886 1.8e-117 426.4 294 72.4
Lj4g0027818 Lotus japonicus HOM05D006517 ORTHO05D007886 1.5e-116 423.3 284 72.5
GSVIVG01000273001 Vitis vinifera HOM05D006517 ORTHO05D007886 5.7e-116 421.4 285 73.0
Manes.03G055100 Manihot esculenta HOM05D006517 ORTHO05D007886 9.7e-116 420.6 294 71.8
Glyma.17G043800 Glycine max HOM05D006517 ORTHO05D007886 2.8e-115 419.1 288 72.9
Potri.018G047000 Populus trichocarpa HOM05D006517 ORTHO05D007886 4.8e-115 418.3 295 69.8
CSS0016512 Camellia sinensis var. sinensis HOM05D006517 ORTHO05D007886 1.1e-114 417.2 294 71.8
Medtr4g124370 Medicago truncatula HOM05D006517 ORTHO05D007886 1.8e-114 416.4 288 70.8
Ca_21351_v3 Cicer arietinum L. HOM05D006517 ORTHO05D007886 2.4e-114 416.0 285 71.9
Prupe.7G189300 Prunus persica HOM05D006517 ORTHO05D007886 2.4e-114 416.0 280 73.2
Duzib150G1397 Durio zibethinus HOM05D006517 ORTHO05D007886 3.1e-114 415.6 291 71.5
Atru.chr7.1806 Acer truncatum HOM05D006517 ORTHO05D007886 2.6e-113 412.5 285 70.2
Dinv42443 Davidia involucrata HOM05D006517 ORTHO05D007886 4.5e-113 411.8 283 72.8
Duzib168G1027 Durio zibethinus HOM05D006517 ORTHO05D007886 7.7e-113 411.0 286 71.7
Gohir.D08G268100 Gossypium hirsutum HOM05D006517 ORTHO05D007886 1.0e-112 410.6 287 70.7
Gorai.004G285800 Gossypium raimondii HOM05D006517 ORTHO05D007886 1.0e-112 410.6 287 70.7
TAR383G1010 Trochodendron aralioides HOM05D006517 ORTHO05D007886 1.0e-112 410.6 290 70.0
Thecc.09G067300 Theobroma cacao HOM05D006517 ORTHO05D007886 2.2e-112 409.5 286 72.4
COL.COLO4_21178 Corchorus olitorius HOM05D006517 ORTHO05D007886 1.2e-110 403.7 286 70.6
Gohir.A08G246900 Gossypium hirsutum HOM05D006517 ORTHO05D007886 1.2e-110 403.7 287 69.3
TPR.G12541 Trifolium pratense HOM05D006517 ORTHO05D007886 2.1e-110 402.9 288 70.5
Phvul.003G125800 Phaseolus vulgaris HOM05D006517 ORTHO05D007886 1.0e-109 400.6 287 70.7
Eucgr.C00754 Eucalyptus grandis HOM05D006517 ORTHO05D007886 1.5e-108 396.7 281 69.8
RcHm_v2.0_Chr2g0096541 Rosa chinensis HOM05D006517 ORTHO05D007886 2.4e-106 389.4 280 69.3
PGR124G0001 Punica granatum HOM05D006517 ORTHO05D007886 1.5e-103 380.2 283 68.6
PGR142G0057 Punica granatum HOM05D006517 ORTHO05D007886 1.5e-103 380.2 283 68.6
Potri.006G217100 Populus trichocarpa HOM05D006517 ORTHO05D007886 3.0e-101 372.5 295 64.4
Oeu000272.2 Olea europaea HOM05D006517 ORTHO05D007886 4.0e-101 372.1 284 64.8
THA.LOC104804445 Tarenaya hassleriana HOM05D006517 ORTHO05D007886 4.0e-101 372.1 283 65.7
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 5.2e-101 371.7 253 75.1
MD15G1225700 Malus domestica HOM05D006517 ORTHO05D007886 1.5e-100 370.2 284 65.8
Nitab4.5_0000987g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 1.1e-98 364.0 283 63.6
CsaV3_1G041470 Cucumis sativus L. HOM05D006517 ORTHO05D007886 5.4e-98 361.7 284 64.8
ClCG03G014700 Citrullus lanatus HOM05D006517 ORTHO05D007886 3.5e-97 359.0 281 65.5
Ciclev10009053m.g Citrus clementina HOM05D006517 ORTHO05D007886 3.5e-97 359.0 285 63.9
Duzib187G0844 Durio zibethinus HOM05D006517 ORTHO05D007886 4.5e-97 358.6 286 65.7
FAN23G1398 Fragaria x ananassa HOM05D006517 ORTHO05D007886 2.9e-96 355.9 280 63.9
Migut.J00866 Erythranthe guttata HOM05D006517 ORTHO05D007886 1.5e-95 353.6 284 61.6
arahy.Tifrunner.gnm1.ann1.2S6U7G Arachis hypogaea HOM05D006517 ORTHO05D007886 5.5e-95 351.7 264 68.6
Sed0014627 Sechium edule HOM05D006517 ORTHO05D007886 4.7e-94 348.6 283 62.9
CANSAT56G3804 Cannabis sativa HOM05D006517 ORTHO05D007886 4.4e-92 342.0 283 62.5
Psat4g020160 Pisum sativum HOM05D006517 ORTHO05D007886 4.4e-92 342.0 238 70.2
MELO3C015558.2 Cucumis melo HOM05D006517 ORTHO05D007886 9.8e-92 340.9 284 62.7
Lsat_1_v5_gn_8_118080 Lactuca sativa HOM05D006517 ORTHO05D007886 1.7e-91 340.1 283 62.5
FvH4_1g09680 Fragaria vesca HOM05D006517 ORTHO05D007886 2.8e-91 339.3 280 61.8
FAN26G1998 Fragaria x ananassa HOM05D006517 ORTHO05D007886 2.8e-91 339.3 280 61.8
CANSAT56G0784 Cannabis sativa HOM05D006517 ORTHO05D007886 3.7e-91 339.0 283 61.8
CAN.G55.2 Capsicum annuum HOM05D006517 ORTHO05D007886 4.9e-91 338.6 285 60.0
HanXRQChr09g0258421 Helianthus annuus HOM05D006517 ORTHO05D007886 6.3e-91 338.2 283 61.5
PSO541G2149 Papaver somniferum HOM05D006517 ORTHO05D007886 1.8e-90 336.7 285 60.7
PSO675G5415 Papaver somniferum HOM05D006517 ORTHO05D007886 2.4e-90 336.3 285 60.4
MD02G1105800 Malus domestica HOM05D006517 ORTHO05D007886 9.2e-90 334.3 280 62.1
ATR0006G021 Amborella trichopoda HOM05D006517 ORTHO05D007886 2.7e-89 332.8 289 58.1
EL10Ac8g18944 Beta vulgaris HOM05D006517 ORTHO05D007886 4.5e-89 332.0 286 60.1
CDE05G1274 Ceratophyllum demersum HOM05D006517 ORTHO05D007886 5.0e-88 328.6 287 59.2
Sabra06G0167400 Salix brachista HOM05D006517 ORTHO05D007886 5.6e-87 325.1 302 57.9
MBI13_g05966_MAGBIO Magnolia biondii HOM05D006517 ORTHO05D007886 7.3e-87 324.7 288 58.3
Nitab4.5_0005239g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 7.3e-87 324.7 284 58.1
Sc18g0002960 Simmondsia chinensis HOM05D006517 ORTHO05D007886 1.2e-86 323.9 283 60.1
Hund08920 Selenicereus undatus HOM05D006517 ORTHO05D007886 5.2e-85 318.5 283 58.3
VMungo1215G1783 Vigna mungo HOM05D006517 ORTHO05D007886 4.4e-84 315.5 285 59.6
Aqoxy7G00916 Aquilegia oxysepala HOM05D006517 ORTHO05D007886 7.5e-84 314.7 292 55.5
unitig_26.g9120 Utricularia gibba HOM05D006517 ORTHO05D007886 1.3e-83 313.9 286 59.8
Actinidia39602 Actinidia chinensis HOM05D006517 ORTHO05D007886 3.7e-83 312.4 238 66.8
AUR62025324 Chenopodium quinoa HOM05D006517 ORTHO05D007886 4.9e-83 312.0 282 56.7
Oeu000950.1 Olea europaea HOM05D006517 ORTHO05D007886 6.4e-83 311.6 245 64.9
Actinidia39601 Actinidia chinensis HOM05D006517 ORTHO05D007886 1.9e-82 310.1 235 66.4
arahy.Tifrunner.gnm1.ann1.0410DC Arachis hypogaea HOM05D006517 ORTHO05D007886 6.0e-81 305.1 240 66.2
FAN26G3113 Fragaria x ananassa HOM05D006517 ORTHO05D007886 9.5e-79 297.7 280 56.8
ECA232G0292 Erigeron canadensis HOM05D001622 ORTHO05D002989 1.2e-78 297.4 263 61.6
SGA_v2.0_scaffold318G48507 Striga asiatica HOM05D006517 ORTHO05D007886 6.2e-78 295.0 304 53.6
Zm00001eb327610 Zea mays HOM05D006517 ORTHO05D007886 1.1e-77 294.3 279 53.0
FAN28G2617 Fragaria x ananassa HOM05D006517 ORTHO05D007886 8.6e-72 274.6 280 54.3
FAN23G2301 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.2e-68 264.2 280 52.9
SalBow6G1494 Salvia bowleyana HOM05D006517 ORTHO05D007886 2.9e-67 259.6 256 53.9
Os07g0618600 Oryza sativa ssp. japonica HOM05D006517 ORTHO05D007886 3.7e-67 259.2 290 48.6
Nn8g38504 Nelumbo nucifera HOM05D006517 ORTHO05D007886 3.2e-66 256.1 286 50.0
AUR62028338 Chenopodium quinoa HOM05D000417 ORTHO05D007886 4.1e-66 255.8 279 51.3
Mapoly0086s0040 Marchantia polymorpha HOM05D006517 ORTHO05D007886 4.1e-66 255.8 292 46.9
SGA_v2.0_scaffold31G12706 Striga asiatica HOM05D006517 ORTHO05D007886 9.2e-66 254.6 246 54.1
SMO117G0175 Selaginella moellendorffii HOM05D006517 ORTHO05D007886 7.6e-60 235.0 310 44.5
DCAR_010521 Daucus carota HOM05D006517 ORTHO05D007886 1.3e-59 234.2 297 48.5
Rhsim05G0081000 Rhododendron simsii HOM05D006517 ORTHO05D007886 1.4e-58 230.7 267 50.9
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 3.9e-56 222.6 241 50.6
Aa31LG5G9580 Aethionema arabicum HOM05D006517 ORTHO05D007886 1.6e-54 217.2 210 54.8
Sp4g06310 Schrenkiella parvula HOM05D006517 ORTHO05D007886 4.9e-51 205.7 202 56.9
C04p55990 Brassica napus HOM05D006517 ORTHO05D007886 8.4e-51 204.9 167 64.7
BolC4t27132H Brassica oleracea HOM05D006517 ORTHO05D007886 8.4e-51 204.9 167 64.7
BraA04t17607Z Brassica rapa HOM05D006517 ORTHO05D007886 1.2e-49 201.1 167 62.9
Carub.0004s0605 Capsella rubella HOM05D006517 ORTHO05D007886 1.2e-49 201.1 173 60.7
CBR_g36802 Chara braunii HOM05D006517 ORTHO05D007886 2.7e-49 199.9 288 39.9
AL4G18760 Arabidopsis lyrata HOM05D006517 ORTHO05D007886 1.3e-48 197.6 201 54.7
A04p20280 Brassica napus HOM05D006517 ORTHO05D007886 1.3e-48 197.6 167 62.3
Solyc06g031680.2 Solanum lycopersicum HOM05D006517 ORTHO05D007886 1.7e-48 197.2 172 58.1
AT2G26210 Arabidopsis thaliana HOM05D006517 ORTHO05D007886 2.3e-48 196.8 201 55.2
Cpa.g.sc82.30 Carica papaya HOM05D006517 ORTHO05D007886 6.6e-48 195.3 115 82.6
HPP92_002241 Vanilla planifolia HOM05D000872 ORTHO05D000777 2.5e-47 193.4 248 46.4
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 3.3e-47 193.0 209 49.8
Pp3c18_11010 Physcomitrium patens HOM05D006517 ORTHO05D007886 1.6e-46 190.7 284 38.0
CARHR115040 Cardamine hirsuta HOM05D006517 ORTHO05D007886 8.1e-46 188.3 218 52.8
Cc09_g04390 Coffea canephora HOM05D006517 ORTHO05D007886 1.5e-44 184.1 138 61.6
FAN19G3155 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.4e-42 177.6 220 48.2
Cc09_g04380 Coffea canephora HOM05D006517 ORTHO05D007886 4.2e-42 176.0 137 62.8
Sopen06g010170 Solanum pennellii HOM05D006517 ORTHO05D007886 4.2e-42 176.0 142 59.2
AagrBONN_evm.TU.Sc2ySwM_362.2898 Anthoceros agrestis HOM05D006517 ORTHO05D007886 1.1e-39 167.9 228 41.2
BcaNung07167 Brassica carinata HOM05D006517 ORTHO05D007886 3.3e-39 166.4 182 54.9
SEGI_24061 Sequoiadendron giganteum HOM05D006517 ORTHO05D007886 1.3e-35 154.5 184 46.2
Thhalv10002200m.g Eutrema salsugineum HOM05D006517 ORTHO05D007886 1.0e-32 144.8 206 46.1
Solyc06g031690.4 Solanum lycopersicum HOM05D006517 ORTHO05D007886 1.0e-32 144.8 92 76.1
Cpa.g.sc82.25 Carica papaya HOM05D006517 ORTHO05D007886 9.6e-31 138.3 70 88.6
vmacro13145 Vaccinium macrocarpon HOM05D006517 ORTHO05D007886 5.0e-27 125.9 217 41.5
Peaxi162Scf00658g00031 Petunia axillaris HOM05D000115 ORTHO05D000464 5.1e-24 115.9 195 37.4
Medtr5g081760 Medicago truncatula HOM05D006517 ORTHO05D007886 1.7e-19 100.9 89 59.6
Lsat_1_v5_gn_5_30201 Lactuca sativa HOM05D006517 ORTHO05D007886 1.5e-15 87.8 83 51.8
Medtr4g036440 Medicago truncatula HOM05D006517 ORTHO05D007886 1.5e-15 87.8 75 61.3
Medtr8g098885 Medicago truncatula HOM05D006517 ORTHO05D007886 9.7e-15 85.1 156 39.7
Cpa.g.sc82.29 Carica papaya HOM05D006517 ORTHO05D007886 6.1e-09 65.9 72 47.2
TWI73G0176 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 1.3e-06 58.2 80 37.5
MELO3C002689.2 Cucumis melo HOM05D000088 ORTHO05D003056 2.2e-06 57.4 118 32.2
Oeu026472.1 Olea europaea HOM05D000088 ORTHO05D003056 2.8e-06 57.0 127 28.3
Sed0009859 Sechium edule HOM05D000088 ORTHO05D003056 2.8e-06 57.0 92 33.7
SalBow6G0039 Salvia bowleyana HOM05D006517 ORTHO05D007886 3.7e-06 56.6 27 88.9
Thecc.06G161000 Theobroma cacao HOM05D000088 ORTHO05D003056 4.8e-06 56.2 79 35.4
Peaxi162Scf00038g02250 Petunia axillaris HOM05D000903 ORTHO05D000731 6.3e-06 55.8 115 31.3
Sp7g17660 Schrenkiella parvula HOM05D000088 ORTHO05D003056 8.2e-06 55.5 75 38.7


User provided reference genes

Program Settings