Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 3.6e-100 368.6 241 100.0
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 3.1e-67 259.2 246 70.7
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 9.0e-67 257.7 250 74.0
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 2.7e-63 246.1 242 71.9
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 9.6e-53 211.1 301 59.8
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 6.7e-46 188.3 256 53.5
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 1.5e-45 187.2 242 57.0
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 5.7e-45 185.3 258 52.3
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 7.4e-45 184.9 105 91.4
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 2.8e-44 183.0 109 88.1
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 3.7e-44 182.6 253 55.7
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 6.3e-44 181.8 253 55.3
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 8.2e-44 181.4 112 83.0
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 3.1e-43 179.5 253 55.3
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 4.1e-43 179.1 109 86.2
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 9.0e-43 177.9 253 54.5
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 9.0e-43 177.9 191 72.3
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 9.0e-43 177.9 253 57.3
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 1.2e-42 177.6 109 83.5
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 1.2e-42 177.6 112 82.1
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 2.0e-42 176.8 106 86.8
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 2.6e-42 176.4 112 79.5
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 2.6e-42 176.4 108 84.3
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 4.5e-42 175.6 112 81.2
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 4.5e-42 175.6 112 81.2
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 4.5e-42 175.6 109 82.6
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 5.9e-42 175.3 112 79.5
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 5.9e-42 175.3 112 83.0
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 7.6e-42 174.9 220 57.7
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 7.6e-42 174.9 112 81.2
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 7.6e-42 174.9 108 83.3
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 1.0e-41 174.5 106 85.8
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 1.0e-41 174.5 231 61.9
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 1.0e-41 174.5 172 70.3
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 1.0e-41 174.5 108 81.5
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 1.0e-41 174.5 112 80.4
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 1.7e-41 173.7 112 79.5
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 2.2e-41 173.3 112 80.4
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 2.2e-41 173.3 112 82.1
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 2.2e-41 173.3 110 80.0
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 6.5e-41 171.8 110 79.1
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 8.5e-41 171.4 108 82.4
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 8.5e-41 171.4 112 77.7
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 1.1e-40 171.0 105 83.8
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 1.1e-40 171.0 105 83.8
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 1.1e-40 171.0 112 78.6
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 3.2e-40 169.5 109 80.7
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 4.2e-40 169.1 112 79.5
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 4.2e-40 169.1 112 78.6
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 5.5e-40 168.7 112 75.0
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 5.5e-40 168.7 108 79.6
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 5.5e-40 168.7 107 79.4
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 5.5e-40 168.7 108 79.6
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 7.2e-40 168.3 242 57.0
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 9.3e-40 167.9 111 78.4
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 1.6e-39 167.2 108 80.6
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 2.1e-39 166.8 110 76.4
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 2.1e-39 166.8 109 79.8
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 2.1e-39 166.8 109 79.8
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 2.1e-39 166.8 105 80.0
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 2.1e-39 166.8 109 79.8
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 2.7e-39 166.4 106 80.2
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 3.6e-39 166.0 108 78.7
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 4.6e-39 165.6 251 59.4
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 6.1e-39 165.2 249 50.6
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 7.9e-39 164.9 112 76.8
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 1.8e-38 163.7 112 75.0
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 1.8e-38 163.7 112 75.9
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 2.3e-38 163.3 108 79.6
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 5.1e-38 162.2 107 76.6
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 6.7e-38 161.8 109 75.2
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 6.7e-38 161.8 109 76.1
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 6.7e-38 161.8 109 76.1
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 1.1e-37 161.0 112 74.1
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 1.5e-37 160.6 251 47.8
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 1.9e-37 160.2 112 75.9
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 1.9e-37 160.2 112 77.7
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 2.5e-37 159.8 119 72.3
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 3.3e-37 159.5 112 75.9
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 3.3e-37 159.5 111 72.1
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 3.3e-37 159.5 111 72.1
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 5.7e-37 158.7 106 75.5
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 9.7e-37 157.9 112 77.7
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 9.7e-37 157.9 112 77.7
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 2.2e-36 156.8 110 73.6
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 2.8e-36 156.4 112 71.4
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 2.8e-36 156.4 131 67.2
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 4.8e-36 155.6 112 72.3
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 4.8e-36 155.6 112 73.2
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 6.3e-36 155.2 108 75.0
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 8.2e-36 154.8 112 73.2
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 1.4e-35 154.1 108 73.1
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 1.4e-35 154.1 109 71.6
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.4e-35 154.1 108 73.1
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 1.8e-35 153.7 108 75.0
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 2.4e-35 153.3 108 70.4
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 3.1e-35 152.9 108 73.1
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 4.1e-35 152.5 112 70.5
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 1.2e-34 151.0 108 72.2
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 1.5e-34 150.6 108 73.1
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 1.5e-34 150.6 108 73.1
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 1.5e-34 150.6 108 73.1
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 1.5e-34 150.6 108 73.1
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 1.5e-34 150.6 108 73.1
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 2.6e-34 149.8 111 68.5
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 2.6e-34 149.8 108 73.1
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 5.0e-33 145.6 108 70.4
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 8.5e-33 144.8 108 70.4
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 3.2e-32 142.9 164 53.7
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 7.2e-32 141.7 105 70.5
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 1.2e-31 141.0 108 65.7
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 1.6e-31 140.6 112 66.1
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.6e-31 140.6 96 76.0
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 1.6e-31 140.6 109 67.0
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 6.1e-31 138.7 108 65.7
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 6.7e-30 135.2 104 67.3
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 6.7e-30 135.2 112 64.3
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 1.5e-29 134.0 102 65.7
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 2.0e-29 133.7 91 73.6
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 2.6e-29 133.3 104 65.4
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 2.6e-29 133.3 104 65.4
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 2.6e-29 133.3 104 65.4
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 2.6e-29 133.3 104 65.4
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 2.6e-29 133.3 104 65.4
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 2.6e-29 133.3 104 65.4
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 2.6e-29 133.3 104 65.4
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 3.3e-29 132.9 104 65.4
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 1.7e-28 130.6 105 62.9
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 2.8e-28 129.8 97 68.0
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 3.7e-28 129.4 104 63.5
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 8.2e-28 128.3 104 64.4
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 1.8e-27 127.1 95 68.4
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 1.8e-27 127.1 108 65.7
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 4.1e-27 125.9 104 63.5
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 9.1e-27 124.8 104 65.4
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 1.5e-21 107.5 85 64.7
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 2.9e-17 93.2 103 48.5
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 9.4e-16 88.2 66 71.2
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 2.0e-13 80.5 64 68.8
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 9.1e-11 71.6 64 65.6
FAN19G2796 Fragaria x ananassa HOM05D005425 ORTHO05D046282 2.7e-10 70.1 64 64.1
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 2.1e-07 60.5 104 42.3
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 2.1e-07 60.5 104 42.3
Zm00001eb041420 Zea mays HOM05D001962 ORTHO05D002236 3.6e-07 59.7 35 82.9
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 6.1e-07 58.9 104 41.3
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 8.0e-07 58.5 103 41.7
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 8.0e-07 58.5 104 40.4
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 8.0e-07 58.5 103 41.7
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 8.0e-07 58.5 102 38.2
QL08p010712 Quercus lobata HOM05D004888 ORTHO05D005792 8.0e-07 58.5 101 41.6
QL08p011155 Quercus lobata HOM05D004888 ORTHO05D005792 8.0e-07 58.5 101 41.6
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 1.0e-06 58.2 59 55.9
Manes.03G124500 Manihot esculenta HOM05D004888 ORTHO05D005792 1.8e-06 57.4 102 38.2
Duzib213G0117 Durio zibethinus HOM05D004888 ORTHO05D005792 3.0e-06 56.6 102 37.3
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 3.0e-06 56.6 102 37.3
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 4.0e-06 56.2 96 41.7
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 4.0e-06 56.2 100 40.0
CSS0004402 Camellia sinensis var. sinensis HOM05D004888 ORTHO05D005792 5.2e-06 55.8 102 38.2
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 5.2e-06 55.8 102 37.3
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 6.8e-06 55.5 100 37.0
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 6.8e-06 55.5 100 37.0
Lsat_1_v5_gn_7_108760 Lactuca sativa HOM05D004888 ORTHO05D005792 6.8e-06 55.5 103 42.7
Rhsim06G0216300 Rhododendron simsii HOM05D004888 ORTHO05D005792 6.8e-06 55.5 102 39.2
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 6.8e-06 55.5 102 38.2


User provided reference genes

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