Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.9e-135 485.3 262 100.0
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 6.9e-129 464.2 262 94.7
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 2.9e-127 458.8 262 92.7
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.9e-127 458.8 262 93.5
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 4.9e-127 458.0 262 93.1
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 4.9e-127 458.0 262 93.1
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.1e-126 456.8 262 93.5
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.1e-126 456.8 262 93.5
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.1e-126 456.8 262 93.5
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 1.4e-126 456.4 262 92.7
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 5.4e-126 454.5 262 92.4
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.6e-125 453.0 262 92.4
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 2.1e-125 452.6 262 92.0
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 3.5e-125 451.8 262 91.6
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.6e-125 451.4 262 90.8
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 4.6e-125 451.4 262 91.6
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 6.0e-125 451.1 262 91.6
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 7.8e-125 450.7 262 91.2
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 7.8e-125 450.7 262 91.2
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.3e-124 449.1 262 90.8
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 2.3e-124 449.1 262 91.2
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 3.9e-124 448.4 262 90.5
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 6.6e-124 447.6 262 92.0
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 5.6e-123 444.5 262 90.5
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 5.6e-123 444.5 262 90.5
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 7.3e-123 444.1 262 89.7
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 7.3e-123 444.1 262 90.8
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.3e-122 443.4 262 88.5
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.6e-122 443.0 261 89.3
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 2.8e-122 442.2 262 89.7
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 6.2e-122 441.0 262 90.5
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 6.2e-122 441.0 262 88.5
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 8.1e-122 440.7 262 88.2
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 87.8
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 87.0
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.4e-121 439.9 262 87.8
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 1.4e-121 439.9 262 90.1
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.4e-121 439.9 262 90.1
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 89.7
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 87.0
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 3.1e-121 438.7 262 87.0
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 3.1e-121 438.7 262 87.4
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 4.0e-121 438.3 262 89.3
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 5.3e-121 438.0 262 89.3
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 5.3e-121 438.0 262 89.7
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 87.4
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 88.2
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.6e-120 435.6 262 86.6
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 4.5e-120 434.9 262 86.3
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 1.3e-119 433.3 263 88.2
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 2.9e-119 432.2 259 89.2
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 85.1
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 85.5
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 87.8
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 87.8
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.1e-118 430.3 263 87.5
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 1.9e-118 429.5 262 85.1
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 84.7
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 85.9
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 3.2e-118 428.7 263 87.1
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 84.4
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 88.9
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 86.6
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 85.9
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 87.8
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 86.3
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 87.4
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 84.7
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 85.5
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 85.9
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 85.1
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 85.5
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 85.1
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 84.0
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 85.9
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 5.1e-116 421.4 263 85.6
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 8.7e-116 420.6 262 84.4
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 84.0
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 83.6
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 83.6
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 83.6
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 9.6e-115 417.2 262 84.4
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 2.8e-114 415.6 253 85.4
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 83.2
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 3.7e-114 415.2 264 84.1
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 6.2e-114 414.5 262 85.9
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.4e-113 413.3 264 83.3
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 3.1e-113 412.1 247 89.5
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 5.3e-113 411.4 264 83.3
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 6.9e-113 411.0 247 89.1
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.2e-112 410.2 262 84.0
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 5.8e-112 407.9 262 80.5
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 7.6e-112 407.5 260 84.2
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 6.4e-111 404.4 263 80.6
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 1.4e-110 403.3 263 82.1
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 1.9e-110 402.9 253 85.0
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 5.5e-110 401.4 262 82.1
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 7.1e-110 401.0 263 83.7
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 9.3e-110 400.6 263 83.7
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 1.6e-109 399.8 262 81.7
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 81.3
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 2.3e-108 396.0 262 80.5
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 8.7e-108 394.0 262 78.6
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 78.6
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 78.6
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 78.6
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 78.6
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 78.6
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 78.6
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 78.6
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 4.3e-107 391.7 262 78.2
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 4.3e-107 391.7 262 78.6
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 4.3e-107 391.7 270 78.1
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 5.6e-107 391.3 262 78.2
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 5.6e-107 391.3 262 78.2
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 5.6e-107 391.3 262 78.6
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 5.6e-107 391.3 262 78.6
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 78.2
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 1.3e-106 390.2 262 78.2
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 1.3e-106 390.2 262 78.6
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 1.3e-106 390.2 263 81.7
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 78.2
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 4.8e-106 388.3 263 78.3
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 4.8e-106 388.3 263 78.3
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 4.8e-106 388.3 263 78.3
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 6.2e-106 387.9 263 81.7
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.8e-105 386.3 263 80.6
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.0e-103 380.6 270 75.2
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.2e-103 379.4 263 80.2
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 2.9e-103 379.0 248 81.5
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 5.5e-102 374.8 264 77.7
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.1e-101 372.9 262 78.2
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 2.3e-100 369.4 262 77.5
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 7.4e-99 364.4 218 88.5
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 1.8e-97 359.8 242 81.4
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.1e-97 359.0 249 75.5
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 5.0e-95 351.7 210 87.1
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 5.0e-95 351.7 234 79.1
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 7.2e-94 347.8 263 68.8
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 1.2e-93 347.1 226 78.8
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.7e-93 345.9 214 86.0
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 4.6e-93 345.1 262 73.7
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 2.2e-90 336.3 219 77.2
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.4e-89 333.6 263 66.2
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 1.0e-87 327.4 219 76.7
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.7e-82 310.1 250 71.6
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.2e-82 309.7 247 71.3
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 4.1e-81 305.4 267 63.3
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.2e-79 299.7 236 64.0
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 2.9e-79 299.3 225 68.9
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 2.3e-76 289.7 204 77.0
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 6.7e-76 288.1 250 65.6
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 1.6e-72 276.9 263 61.2
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 3.5e-72 275.8 208 68.8
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.2e-71 273.1 262 64.5
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 4.0e-68 262.3 270 57.0
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.2e-64 250.8 235 66.0
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 1.6e-64 250.4 211 63.0
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 2.0e-56 223.4 130 86.9
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 1.7e-55 220.3 244 50.8
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 6.1e-53 211.8 120 91.7
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.5e-51 207.2 244 50.0
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 4.9e-50 202.2 138 79.7
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 7.3e-46 188.3 118 84.7
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.6e-45 187.2 179 59.8
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 4.7e-37 159.1 141 66.0
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 8.0e-37 158.3 191 52.4
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.6e-29 134.0 96 70.8
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 4.9e-26 122.5 69 94.2


User provided reference genes

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