Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 0.0e+00 1704.1 865 100.0
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1423.3 867 82.5
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1404.8 867 82.1
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 0.0e+00 1333.5 834 81.3
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1250.3 868 72.8
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 0.0e+00 1243.8 870 73.3
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 0.0e+00 1239.2 868 72.6
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 0.0e+00 1223.0 870 72.2
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1221.5 868 71.7
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1221.1 868 71.5
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 0.0e+00 1220.7 869 71.9
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1220.3 869 71.8
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1218.8 869 71.8
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1217.6 869 72.0
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1217.2 869 72.3
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 0.0e+00 1209.9 867 71.0
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1195.3 871 71.4
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1194.1 868 70.7
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 0.0e+00 1194.1 868 71.0
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 0.0e+00 1191.8 868 71.5
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1189.9 868 71.5
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 0.0e+00 1189.9 870 69.5
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 0.0e+00 1181.4 874 69.7
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 0.0e+00 1178.7 870 69.8
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 0.0e+00 1176.4 868 69.7
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 0.0e+00 1176.0 865 69.4
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1175.2 868 70.3
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 0.0e+00 1172.9 868 70.4
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1168.7 868 69.7
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1166.0 865 69.6
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 0.0e+00 1164.4 869 68.6
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1159.8 869 68.5
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 0.0e+00 1154.0 866 68.0
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 0.0e+00 1152.5 869 69.2
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1149.8 870 68.2
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1144.4 825 69.8
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1141.7 870 67.8
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 0.0e+00 1140.2 868 68.8
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 0.0e+00 1139.8 888 67.1
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 0.0e+00 1138.3 870 68.6
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 0.0e+00 1129.8 866 66.9
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 0.0e+00 1129.0 872 67.1
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 0.0e+00 1127.5 866 67.1
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 0.0e+00 1122.8 869 67.3
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 0.0e+00 1122.5 867 66.3
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 0.0e+00 1119.0 869 67.0
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 0.0e+00 1114.0 868 66.2
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 0.0e+00 1107.8 866 65.6
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 0.0e+00 1106.3 868 67.2
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1087.8 869 65.5
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 0.0e+00 1084.3 867 64.8
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 0.0e+00 1083.9 863 65.0
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 0.0e+00 1083.9 863 65.6
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 0.0e+00 1083.6 850 66.1
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 0.0e+00 1083.2 881 64.5
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 0.0e+00 1080.5 877 64.4
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 0.0e+00 1080.5 864 65.0
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 0.0e+00 1078.2 863 65.0
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 4.1e-311 1071.2 849 65.4
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 7.1e-311 1070.5 869 64.1
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 1.4e-308 1062.8 873 64.4
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 9.7e-305 1050.0 875 63.1
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 2.2e-301 1038.9 876 62.3
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 3.8e-301 1038.1 872 62.6
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 1.1e-300 1036.6 850 64.5
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 2.5e-300 1035.4 871 62.7
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 1.4e-298 1029.6 877 60.4
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 1.8e-298 1029.2 870 62.6
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 3.0e-298 1028.5 871 62.9
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 5.1e-298 1027.7 865 61.5
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 2.5e-297 1025.4 872 61.8
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 2.5e-297 1025.4 871 62.1
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 3.7e-296 1021.5 870 61.8
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 6.3e-296 1020.8 913 60.2
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 6.5e-293 1010.7 755 69.7
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 8.5e-293 1010.4 875 60.6
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 4.2e-292 1008.1 811 66.3
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 9.4e-292 1006.9 855 62.3
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 4.7e-291 1004.6 873 60.7
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 3.0e-290 1001.9 875 60.3
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 1.5e-289 999.6 802 64.6
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 4.4e-289 998.0 755 69.4
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 3.1e-287 991.9 854 61.6
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 5.9e-286 987.6 807 63.6
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 4.7e-275 951.4 870 57.7
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 2.3e-274 949.1 833 60.0
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 1.1e-271 940.3 850 59.9
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 2.1e-267 926.0 808 60.9
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 1.2e-257 893.6 865 53.4
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 1.3e-253 880.2 853 56.0
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 6.6e-253 877.9 871 54.9
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 7.0e-247 857.8 868 52.4
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 3.9e-245 852.0 651 67.9
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 6.6e-245 851.3 810 56.8
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 1.2e-243 847.0 868 52.6
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 1.6e-238 830.1 860 53.7
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 1.5e-236 823.5 692 64.6
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 1.3e-205 720.7 754 51.6
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.1e-194 684.5 524 68.1
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 1.3e-171 607.8 735 46.9
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 5.9e-145 519.2 439 60.4
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 1.1e-138 498.4 840 37.5
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 3.9e-136 490.0 873 36.1
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 1.5e-132 478.0 853 36.7
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 6.8e-117 426.0 322 68.3
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 5.6e-103 379.8 1003 30.4
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 6.3e-62 243.4 189 63.5
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 7.7e-28 130.2 100 68.0
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 4.3e-26 124.4 180 42.8
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 1.0e-19 103.2 65 72.3
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 1.9e-18 99.0 63 76.2
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 5.6e-18 97.4 573 22.7
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 8.9e-16 90.1 734 22.2
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 4.4e-15 87.8 66 63.6
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 8.3e-14 83.6 86 51.2
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 4.1e-13 81.3 57 61.4
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 5.4e-13 80.9 65 60.0
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 9.5e-10 70.1 54 64.8
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 2.8e-09 68.6 54 61.1
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 3.6e-09 68.2 101 50.5
Lsat_1_v5_gn_9_51101 Lactuca sativa HOM05D003114 ORTHO05D003519 2.6e-07 62.0 46 63.0
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 3.4e-07 61.6 51 56.9
PRCOL_00003865 Prasinoderma coloniale HOM05D006510 ORTHO05D008171 7.5e-07 60.5 599 22.9
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 3.7e-06 58.2 42 61.9


User provided reference genes

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