Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G187000 Carya illinoinensis HOM05D006652 ORTHO05D008645 2.2e-221 771.9 383 100.0
QL08p041412 Quercus lobata HOM05D006652 ORTHO05D008645 2.4e-167 592.4 381 79.0
GSVIVG01020686001 Vitis vinifera HOM05D006652 ORTHO05D008645 4.2e-159 565.1 383 76.2
Dinv08786 Davidia involucrata HOM05D006652 ORTHO05D008645 9.6e-156 553.9 368 75.5
vmacro09218 Vaccinium macrocarpon HOM05D006652 ORTHO05D008645 1.5e-153 546.6 329 81.2
CSS0047332 Camellia sinensis var. sinensis HOM05D006652 ORTHO05D008645 2.9e-152 542.3 329 79.9
Nitab4.5_0000822g0100 Nicotiana tabacum HOM05D006652 ORTHO05D008645 6.5e-152 541.2 356 75.6
Nn1g04382 Nelumbo nucifera HOM05D006652 ORTHO05D008645 9.3e-151 537.3 388 71.1
TAR629G0548 Trochodendron aralioides HOM05D006652 ORTHO05D008645 9.3e-151 537.3 383 70.5
Peaxi162Scf00241g00812 Petunia axillaris HOM05D006652 ORTHO05D008645 2.7e-150 535.8 331 78.2
Hma1.2p1_0166F.1_g073540 Hydrangea macrophylla HOM05D006652 ORTHO05D008645 7.9e-150 534.3 333 79.0
arahy.Tifrunner.gnm1.ann1.KP1SVS Arachis hypogaea HOM05D006652 ORTHO05D008645 1.0e-149 533.9 380 70.8
Lj3g0009013 Lotus japonicus HOM05D006652 ORTHO05D008645 1.8e-149 533.1 335 77.6
Aqoxy4G00418 Aquilegia oxysepala HOM05D006652 ORTHO05D008645 2.3e-149 532.7 337 77.2
CAN.G782.5 Capsicum annuum HOM05D006652 ORTHO05D008645 1.1e-148 530.4 356 72.8
arahy.Tifrunner.gnm1.ann1.5ZDL5Q Arachis hypogaea HOM05D006652 ORTHO05D008645 2.5e-148 529.3 380 70.3
Lj8C103T10 Lonicera japonica HOM05D006652 ORTHO05D008645 9.6e-148 527.3 390 71.0
Glyma.12G122700 Glycine max HOM05D006652 ORTHO05D008645 1.3e-147 526.9 383 68.7
Solyc10g008020.3 Solanum lycopersicum HOM05D006652 ORTHO05D008645 2.4e-146 522.7 331 77.0
Sopen10g003890 Solanum pennellii HOM05D006652 ORTHO05D008645 1.2e-145 520.4 331 76.7
Glyma.06G283400 Glycine max HOM05D006652 ORTHO05D008645 1.5e-145 520.0 382 68.1
Nitab4.5_0008146g0020 Nicotiana tabacum HOM05D006652 ORTHO05D008645 2.0e-145 519.6 331 76.4
Atru.chr6.2810_Atru.chr6.2811 Acer truncatum HOM05D006652 ORTHO05D008645 2.6e-145 519.2 385 70.4
Ca_18890_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 2.6e-145 519.2 383 69.2
Ciclev10015734m.g Citrus clementina HOM05D006652 ORTHO05D008645 2.6e-145 519.2 383 71.5
Phvul.011G134400 Phaseolus vulgaris HOM05D006652 ORTHO05D008645 2.6e-145 519.2 383 66.3
Potri.019G089700 Populus trichocarpa HOM05D006652 ORTHO05D008645 1.3e-144 516.9 329 76.6
Sabra19G0100100 Salix brachista HOM05D006652 ORTHO05D008645 1.7e-144 516.5 374 69.8
Sabra19G0103300 Salix brachista HOM05D006652 ORTHO05D008645 2.2e-144 516.2 387 67.2
Lsat_1_v5_gn_8_140221 Lactuca sativa HOM05D006652 ORTHO05D008645 7.2e-143 511.1 335 74.3
Migut.H02157 Erythranthe guttata HOM05D006652 ORTHO05D008645 6.1e-142 508.1 329 75.4
Eucgr.K01102 Eucalyptus grandis HOM05D006652 ORTHO05D008645 6.1e-142 508.1 359 70.8
VMungo1127G0176 Vigna mungo HOM05D006652 ORTHO05D008645 1.0e-141 507.3 385 66.2
HanXRQChr17g0558041 Helianthus annuus HOM05D006652 ORTHO05D008645 1.8e-141 506.5 335 73.7
AUR62038922 Chenopodium quinoa HOM05D006652 ORTHO05D008645 2.3e-141 506.1 332 73.8
Medtr4g079750 Medicago truncatula HOM05D006652 ORTHO05D008645 2.3e-141 506.1 336 73.5
Hund07829 Selenicereus undatus HOM05D006652 ORTHO05D008645 2.5e-140 502.7 386 66.8
MSTRG.14312 Avicennia marina HOM05D006652 ORTHO05D008645 3.3e-140 502.3 329 74.8
EL10Ac9g20915 Beta vulgaris HOM05D006652 ORTHO05D008645 3.3e-140 502.3 385 67.3
PGR142G2816 Punica granatum HOM05D006652 ORTHO05D008645 2.2e-139 499.6 355 70.4
ECA234G1589 Erigeron canadensis HOM05D006652 ORTHO05D008645 3.7e-139 498.8 329 74.5
SalBow7G3656 Salvia bowleyana HOM05D006652 ORTHO05D008645 3.7e-139 498.8 356 70.2
Lalb_Chr19g0134921 Lupinus albus HOM05D006652 ORTHO05D008645 4.8e-139 498.4 334 72.8
Thecc.01G148700 Theobroma cacao HOM05D006652 ORTHO05D008645 2.4e-138 496.1 382 66.0
Glyma.06G283600 Glycine max HOM05D006652 ORTHO05D008645 6.9e-138 494.6 384 64.1
COL.COLO4_33547 Corchorus olitorius HOM05D006652 ORTHO05D008645 1.5e-137 493.4 388 64.2
Gohir.A10G153800 Gossypium hirsutum HOM05D006652 ORTHO05D008645 2.9e-136 489.2 381 66.1
Gorai.011G124200 Gossypium raimondii HOM05D006652 ORTHO05D008645 2.9e-136 489.2 381 66.1
Gohir.D10G112300 Gossypium hirsutum HOM05D006652 ORTHO05D008645 3.8e-136 488.8 381 66.1
CsaV3_6G018460 Cucumis sativus L. HOM05D006652 ORTHO05D008645 8.5e-136 487.6 382 64.4
unitig_21.g20276 Utricularia gibba HOM05D006652 ORTHO05D008645 1.1e-135 487.3 329 72.0
Os10g0181600 Oryza sativa ssp. japonica HOM05D006652 ORTHO05D008645 4.2e-135 485.3 327 71.9
Zm00001eb223890 Zea mays HOM05D006652 ORTHO05D008645 9.4e-135 484.2 355 68.2
ATR0661G163 Amborella trichopoda HOM05D006652 ORTHO05D008645 2.1e-134 483.0 328 70.1
PGSC0003DMG400010544 Solanum tuberosum HOM05D006652 ORTHO05D008645 4.6e-134 481.9 394 63.7
Duzib187G0644 Durio zibethinus HOM05D006652 ORTHO05D008645 8.8e-133 477.6 369 66.4
MBI11_g14404_MAGBIO Magnolia biondii HOM05D006652 ORTHO05D008645 7.4e-132 474.6 350 72.3
Actinidia39342 Actinidia chinensis HOM05D006652 ORTHO05D008645 1.1e-130 470.7 285 81.1
SGA_v2.0_scaffold109G31132 Striga asiatica HOM05D006652 ORTHO05D008645 3.4e-129 465.7 475 54.3
TWI59G0297 Tripterygium wilfordii HOM05D006652 ORTHO05D008645 3.0e-125 452.6 309 73.5
Manes.13G137800 Manihot esculenta HOM05D006652 ORTHO05D008645 3.7e-123 445.7 268 79.1
Rhsim04G0074100 Rhododendron simsii HOM05D006652 ORTHO05D008645 1.1e-122 444.1 336 68.5
Cc05_g08160 Coffea canephora HOM05D006652 ORTHO05D008645 3.2e-119 432.6 299 70.2
Psat7g166280 Pisum sativum HOM05D006652 ORTHO05D008645 4.2e-119 432.2 381 60.4
Cc05_g08190 Coffea canephora HOM05D006652 ORTHO05D008645 1.2e-118 430.6 292 71.2
AUR62038997 Chenopodium quinoa HOM05D006652 ORTHO05D008645 2.6e-116 422.9 337 64.7
Sed0018596 Sechium edule HOM05D006652 ORTHO05D008645 5.5e-111 405.2 285 69.1
Pp3c3_7460 Physcomitrium patens HOM05D006652 ORTHO05D008645 6.1e-110 401.7 331 59.8
Glyma.06G283500 Glycine max HOM05D006652 ORTHO05D008645 5.7e-108 395.2 300 67.0
CDE11G0921 Ceratophyllum demersum HOM05D006652 ORTHO05D008645 1.7e-104 383.6 274 68.6
SMO334G0043 Selaginella moellendorffii HOM05D006652 ORTHO05D008645 1.2e-102 377.5 336 56.2
Mapoly0061s0036 Marchantia polymorpha HOM05D006652 ORTHO05D008645 2.0e-97 360.1 336 52.1
DCAR_013062 Daucus carota HOM05D006652 ORTHO05D008645 7.7e-97 358.2 337 59.3
MBI11_g19676_MAGBIO Magnolia biondii HOM05D006652 ORTHO05D008645 1.2e-94 350.9 285 64.9
ClCG02G017930 Citrullus lanatus HOM05D006652 ORTHO05D008645 2.6e-92 343.2 381 52.0
Cc00_g35820 Coffea canephora HOM05D006652 ORTHO05D008645 3.5e-81 306.2 218 67.4
TPR.G21861 Trifolium pratense HOM05D006652 ORTHO05D008645 1.6e-78 297.4 234 64.1
Zm00001eb307930 Zea mays HOM05D006652 ORTHO05D008645 2.0e-76 290.4 204 65.2
MCO11G400 Micromonas commoda HOM05D006652 ORTHO05D008645 1.3e-75 287.7 327 48.0
Ca_18889_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 3.7e-75 286.2 181 76.8
MELO3C019759.2 Cucumis melo HOM05D006652 ORTHO05D008645 3.5e-73 279.6 229 63.8
CBR_g20425 Chara braunii HOM05D006652 ORTHO05D008645 1.0e-72 278.1 334 42.8
PGR142G0648 Punica granatum HOM05D006652 ORTHO05D008645 3.0e-72 276.6 211 65.4
AagrBONN_evm.TU.Sc2ySwM_228.444 Anthoceros agrestis HOM05D006652 ORTHO05D008645 4.7e-70 269.2 251 57.4
PRCOL_00002204 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 1.1e-69 268.1 329 45.9
Zm00001eb202810 Zea mays HOM05D006652 ORTHO05D008645 1.1e-63 248.1 262 51.1
Zm00001eb155780 Zea mays HOM05D006652 ORTHO05D008645 8.1e-62 241.9 249 51.8
CBR_g20426 Chara braunii HOM05D006652 ORTHO05D008645 4.0e-61 239.6 404 36.6
Zm00001eb127120 Zea mays HOM05D006652 ORTHO05D008645 1.5e-60 237.7 252 50.0
Cre03.g200350 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D008645 6.0e-57 225.7 339 38.9
Mapoly0285s0004 Marchantia polymorpha HOM05D006652 ORTHO05D008645 7.8e-57 225.3 229 50.7
Haze_13351 Corylus avellana HOM05D006652 ORTHO05D008645 4.3e-55 219.5 120 88.3
Pp3c17_23540 Physcomitrium patens HOM05D006652 ORTHO05D008645 1.1e-50 204.9 307 37.5
SMO118G0546 Selaginella moellendorffii HOM05D006652 ORTHO05D008645 5.1e-48 196.1 309 36.9
Cre06.g259401 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D008645 8.7e-48 195.3 312 35.9
Mapoly0050s0024 Marchantia polymorpha HOM05D006652 ORTHO05D008645 5.6e-47 192.6 324 35.8
arahy.Tifrunner.gnm1.ann1.MYHL2J Arachis hypogaea HOM05D006652 ORTHO05D008645 3.6e-46 189.9 152 63.2
CBR_g34298 Chara braunii HOM05D006652 ORTHO05D008645 1.4e-45 188.0 322 38.2
SEGI_35274 Sequoiadendron giganteum HOM05D006652 ORTHO05D008645 1.4e-45 188.0 338 36.1
Ca_18891_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 9.3e-42 175.3 150 61.3
Zm00001eb272210 Zea mays HOM05D006652 ORTHO05D008645 6.0e-41 172.6 202 48.5
Haze_13350 Corylus avellana HOM05D006652 ORTHO05D008645 8.1e-38 162.2 102 80.4
MCO08G076 Micromonas commoda HOM05D006652 ORTHO05D008645 3.1e-37 160.2 325 32.0
ECA234G0151 Erigeron canadensis HOM05D006652 ORTHO05D008645 4.0e-37 159.8 102 73.5
PRCOL_00006996 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 6.9e-37 159.1 319 34.5
AUR62024835 Chenopodium quinoa HOM05D006652 ORTHO05D008645 3.5e-33 146.7 141 55.3
TPR.G21859 Trifolium pratense HOM05D006652 ORTHO05D008645 1.3e-30 138.3 139 51.8
TPR.G21704 Trifolium pratense HOM05D006652 ORTHO05D008645 1.4e-29 134.8 121 57.9
Haze_13352 Corylus avellana HOM05D006652 ORTHO05D008645 9.0e-29 132.1 143 54.5
AagrBONN_evm.TU.Sc2ySwM_117.2543 Anthoceros agrestis HOM05D006652 ORTHO05D008645 3.6e-25 120.2 187 39.0
Glyma.12G122501 Glycine max HOM05D006652 ORTHO05D008645 5.0e-19 99.8 96 54.2
Cc05_g08180 Coffea canephora HOM05D006652 ORTHO05D008645 1.1e-18 98.6 54 87.0
Cc05_g08150 Coffea canephora HOM05D006652 ORTHO05D008645 5.5e-18 96.3 54 85.2
MCO09G339 Micromonas commoda HOM05D006652 ORTHO05D268879 5.7e-15 86.3 237 26.2
PRCOL_00001996 Prasinoderma coloniale HOM05D006652 ORTHO05D028803 9.7e-15 85.5 267 26.2
MCO15G420 Micromonas commoda HOM05D006652 ORTHO05D028803 8.5e-11 72.4 234 24.8
Zm00001eb048070 Zea mays HOM05D001272 ORTHO05D001099 8.5e-11 72.4 57 63.2
Ah.07g202300 Amaranthus hybridus HOM05D006652 ORTHO05D008645 1.9e-10 71.2 46 65.2
Cre06.g286350 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D028803 7.2e-10 69.3 254 24.8
Ah.08g222620 Amaranthus hybridus HOM05D006652 ORTHO05D008645 1.6e-09 68.2 56 53.6
PRCOL_00002129 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 1.8e-08 64.7 250 26.0
Cre06.g286300 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D028803 2.6e-07 60.8 256 25.4
SMO358G0637 Selaginella moellendorffii HOM05D005748 ORTHO05D007123 3.3e-07 60.5 150 30.7
BcaB03g11936 Brassica carinata HOM05D005748 ORTHO05D007123 7.4e-07 59.3 169 29.0
CAN.G8.38 Capsicum annuum HOM05D005748 ORTHO05D007123 1.3e-06 58.5 136 32.4
Sopen12g009240 Solanum pennellii HOM05D005748 ORTHO05D007123 1.3e-06 58.5 136 32.4
Cc11_g15440 Coffea canephora HOM05D005748 ORTHO05D007123 3.7e-06 57.0 138 26.8
arahy.Tifrunner.gnm1.ann1.HNNS3P Arachis hypogaea HOM05D005748 ORTHO05D007123 4.8e-06 56.6 151 29.8


User provided reference genes

Program Settings