Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G172600 Carya illinoinensis HOM05D007509 ORTHO05D009525 1.1e-31 139.4 72 100.0
CiPaw.09G170600 Carya illinoinensis HOM05D007509 ORTHO05D009525 2.5e-20 101.7 84 71.4
Cfa017635 Carpinus fangiana HOM05D006951 ORTHO05D008594 6.3e-16 87.0 81 64.2
GSVIVG01033662001 Vitis vinifera HOM05D007509 ORTHO05D009525 6.9e-15 83.6 82 61.0
Gohir.D09G141225 Gossypium hirsutum HOM05D007509 ORTHO05D009525 9.0e-15 83.2 84 61.9
Gorai.006G162100 Gossypium raimondii HOM05D007509 ORTHO05D009525 1.5e-14 82.4 84 60.7
Gohir.A04G071200 Gossypium hirsutum HOM05D007509 ORTHO05D009525 3.4e-14 81.3 84 61.9
Gohir.A09G145100 Gossypium hirsutum HOM05D007509 ORTHO05D009525 3.4e-14 81.3 84 60.7
Gorai.009G414000 Gossypium raimondii HOM05D007509 ORTHO05D009525 3.4e-14 81.3 84 61.9
Gohir.D04G109900 Gossypium hirsutum HOM05D007509 ORTHO05D009525 4.5e-14 80.9 84 60.7
FAN02G1612 Fragaria x ananassa HOM05D007509 ORTHO05D009525 4.2e-12 74.3 71 60.6
FAN05G4600 Fragaria x ananassa HOM05D007509 ORTHO05D009525 5.5e-12 73.9 71 59.2
FAN05G4982 Fragaria x ananassa HOM05D007509 ORTHO05D009525 5.5e-12 73.9 71 59.2
Duzib093G1616 Durio zibethinus HOM05D007509 ORTHO05D009525 2.1e-11 72.0 84 59.5
FAN09G1001 Fragaria x ananassa HOM05D007509 ORTHO05D009525 2.1e-11 72.0 71 59.2
Thecc.05G069500 Theobroma cacao HOM05D007509 ORTHO05D009525 2.7e-11 71.6 85 60.0
FvH4_6g16590 Fragaria vesca HOM05D007509 ORTHO05D009525 4.6e-11 70.9 71 59.2
FAN14G0331 Fragaria x ananassa HOM05D007509 ORTHO05D009525 4.6e-11 70.9 71 59.2
Dinv35801 Davidia involucrata HOM05D007509 ORTHO05D009525 6.1e-11 70.5 83 54.2
TAR369G0282 Trochodendron aralioides HOM05D007509 ORTHO05D009525 6.1e-11 70.5 82 53.7
MD12G1108800 Malus domestica HOM05D007509 ORTHO05D009525 1.4e-10 69.3 77 55.8
RcHm_v2.0_Chr3g0470531 Rosa chinensis HOM05D007509 ORTHO05D009525 1.4e-10 69.3 71 59.2
TPR.G32808 Trifolium pratense HOM05D001446 ORTHO05D001360 1.4e-10 69.3 78 53.8
CANSAT80G0537 Cannabis sativa HOM05D007509 ORTHO05D009525 1.8e-10 68.9 82 51.2
TWI74G1449 Tripterygium wilfordii HOM05D007509 ORTHO05D009525 3.0e-10 68.2 79 55.7
QL07p042864 Quercus lobata HOM05D007509 ORTHO05D009525 1.5e-09 65.9 83 53.0
arahy.Tifrunner.gnm1.ann1.KQD9UV Arachis hypogaea HOM05D007509 ORTHO05D009525 2.0e-09 65.5 67 62.7
arahy.Tifrunner.gnm1.ann1.M25UX0 Arachis hypogaea HOM05D007509 ORTHO05D009525 2.0e-09 65.5 67 62.7
arahy.Tifrunner.gnm1.ann1.Z0MF7F Arachis hypogaea HOM05D007509 ORTHO05D009525 2.0e-09 65.5 67 62.7
MELO3C009368.2 Cucumis melo HOM05D007509 ORTHO05D009525 2.0e-09 65.5 82 50.0
CsaV3_3G036080 Cucumis sativus L. HOM05D007509 ORTHO05D009525 2.0e-09 65.5 82 50.0
Actinidia31324 Actinidia chinensis HOM05D007509 ORTHO05D009525 3.3e-09 64.7 82 51.2
Medtr7g102320 Medicago truncatula HOM05D007509 ORTHO05D009525 4.3e-09 64.3 69 56.5
TWI53G0287 Tripterygium wilfordii HOM05D007509 ORTHO05D009525 4.3e-09 64.3 85 51.8
Actinidia32487 Actinidia chinensis HOM05D007509 ORTHO05D009525 5.7e-09 63.9 83 51.8
PGR004G0585 Punica granatum HOM05D007509 ORTHO05D009525 5.7e-09 63.9 82 48.8
Psat3g041640 Pisum sativum HOM05D007509 ORTHO05D009525 7.4e-09 63.5 78 53.8
Atru.chr8.1768 Acer truncatum HOM05D007509 ORTHO05D009525 1.3e-08 62.8 78 52.6
Lalb_Chr02g0155761 Lupinus albus HOM05D007509 ORTHO05D009525 1.3e-08 62.8 72 61.1
Prupe.7G127400 Prunus persica HOM05D007509 ORTHO05D009525 1.3e-08 62.8 78 53.8
CDE02G4326 Ceratophyllum demersum HOM05D007509 ORTHO05D009525 1.7e-08 62.4 82 47.6
Glyma.10G054000 Glycine max HOM05D007509 ORTHO05D009525 1.7e-08 62.4 68 55.9
Os02g0823600 Oryza sativa ssp. japonica HOM05D007509 ORTHO05D009525 1.7e-08 62.4 82 47.6
TAR633G0343 Trochodendron aralioides HOM05D007509 ORTHO05D009525 1.7e-08 62.4 67 56.7
Glyma.13G141100 Glycine max HOM05D007509 ORTHO05D009525 2.2e-08 62.0 68 55.9
Solyc09g008335.1 Solanum lycopersicum HOM05D007509 ORTHO05D009525 4.8e-08 60.8 84 47.6
Sopen09g003160 Solanum pennellii HOM05D007509 ORTHO05D009525 4.8e-08 60.8 84 47.6
vmacro07305 Vaccinium macrocarpon HOM05D007509 ORTHO05D009525 6.3e-08 60.5 80 50.0
Nn2g13827 Nelumbo nucifera HOM05D007509 ORTHO05D009525 8.2e-08 60.1 81 50.6
Cc06_g04400 Coffea canephora HOM05D007509 ORTHO05D009525 1.1e-07 59.7 83 48.2
Phvul.007G148600 Phaseolus vulgaris HOM05D007509 ORTHO05D009525 1.1e-07 59.7 66 54.5
Rhsim03G0090000 Rhododendron simsii HOM05D007509 ORTHO05D009525 1.1e-07 59.7 82 48.8
Sed0001231 Sechium edule HOM05D007509 ORTHO05D009525 1.8e-07 58.9 82 46.3
Sc20g0005620 Simmondsia chinensis HOM05D006951 ORTHO05D008594 3.1e-07 58.2 68 51.5
Manes.07G043500 Manihot esculenta HOM05D007509 ORTHO05D009525 4.1e-07 57.8 84 48.8
PGSC0003DMG400003867 Solanum tuberosum HOM05D007509 ORTHO05D009525 4.1e-07 57.8 84 46.4
Migut.L01714 Erythranthe guttata HOM05D007509 ORTHO05D009525 5.3e-07 57.4 86 48.8
Nitab4.5_0004476g0020 Nicotiana tabacum HOM05D007509 ORTHO05D009525 5.3e-07 57.4 83 48.2
Nn6g35255 Nelumbo nucifera HOM05D007509 ORTHO05D009525 6.9e-07 57.0 81 48.1
ATR0723G032 Amborella trichopoda HOM05D007509 ORTHO05D009525 9.1e-07 56.6 59 55.9
CDE08G0025 Ceratophyllum demersum HOM05D007509 ORTHO05D009525 1.2e-06 56.2 57 59.6
Potri.006G122600 Populus trichocarpa HOM05D007509 ORTHO05D009525 1.2e-06 56.2 84 46.4
Cpa.g.sc92.105 Carica papaya HOM05D007509 ORTHO05D009525 5.9e-06 53.9 68 52.9


User provided reference genes

Program Settings