Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G172100 Carya illinoinensis HOM05D002934 ORTHO05D013123 5.9e-21 103.2 50 100.0
Aqoxy2G00661 Aquilegia oxysepala HOM05D002934 ORTHO05D003937 1.0e-12 75.9 47 78.7
Aqoxy4G01987 Aquilegia oxysepala HOM05D002934 ORTHO05D003937 1.0e-12 75.9 47 78.7
CSS0038234 Camellia sinensis var. sinensis HOM05D002934 ORTHO05D003937 1.0e-12 75.9 47 78.7
Migut.H01273 Erythranthe guttata HOM05D002934 ORTHO05D003937 1.0e-12 75.9 47 78.7
Lj1C638T10 Lonicera japonica HOM05D002934 ORTHO05D003937 1.3e-12 75.5 47 78.7
Hma1.2p1_1020F.1_g248460 Hydrangea macrophylla HOM05D002934 ORTHO05D003937 2.2e-12 74.7 47 76.6
Dinv20233 Davidia involucrata HOM05D002934 ORTHO05D013123 2.9e-12 74.3 47 76.6
Lj3g0015503 Lotus japonicus HOM05D002934 ORTHO05D003937 2.9e-12 74.3 47 76.6
Sc02g0000080 Simmondsia chinensis HOM05D002934 ORTHO05D003937 2.9e-12 74.3 47 74.5
SGA_v2.0_scaffold181G39723 Striga asiatica HOM05D002934 ORTHO05D003937 2.9e-12 74.3 47 76.6
arahy.Tifrunner.gnm1.ann1.6MS3W4 Arachis hypogaea HOM05D002934 ORTHO05D003937 3.8e-12 73.9 47 76.6
arahy.Tifrunner.gnm1.ann1.TG142F Arachis hypogaea HOM05D002934 ORTHO05D003937 3.8e-12 73.9 47 76.6
Eucgr.A00868 Eucalyptus grandis HOM05D002934 ORTHO05D003937 3.8e-12 73.9 47 74.5
MBI15_g05581_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 3.8e-12 73.9 47 76.6
Manes.09G120000 Manihot esculenta HOM05D002934 ORTHO05D003937 3.8e-12 73.9 47 74.5
Phvul.008G077900 Phaseolus vulgaris HOM05D002934 ORTHO05D003937 3.8e-12 73.9 47 76.6
QL07p030511 Quercus lobata HOM05D002934 ORTHO05D003937 3.8e-12 73.9 47 76.6
QL07p031542 Quercus lobata HOM05D002934 ORTHO05D003937 3.8e-12 73.9 47 76.6
SGA_v2.0_scaffold159G37538 Striga asiatica HOM05D002934 ORTHO05D003937 3.8e-12 73.9 47 76.6
TAR633G1746 Trochodendron aralioides HOM05D002934 ORTHO05D003937 3.8e-12 73.9 47 74.5
Actinidia07503 Actinidia chinensis HOM05D002934 ORTHO05D003937 5.0e-12 73.6 47 76.6
Ah.03g138170 Amaranthus hybridus HOM05D002934 ORTHO05D003937 5.0e-12 73.6 47 74.5
EL10Ac1g00002 Beta vulgaris HOM05D002934 ORTHO05D003937 5.0e-12 73.6 47 74.5
Gohir.A02G010300 Gossypium hirsutum HOM05D002934 ORTHO05D003937 5.0e-12 73.6 47 74.5
Gohir.D02G010600 Gossypium hirsutum HOM05D002934 ORTHO05D003937 5.0e-12 73.6 47 74.5
Manes.08G166700 Manihot esculenta HOM05D002934 ORTHO05D003937 5.0e-12 73.6 47 74.5
Thecc.04G170500 Theobroma cacao HOM05D002934 ORTHO05D003937 5.0e-12 73.6 47 76.6
A08p34340 Brassica napus HOM05D002934 ORTHO05D003937 6.5e-12 73.2 47 74.5
C08p13190 Brassica napus HOM05D002934 ORTHO05D003937 6.5e-12 73.2 47 74.5
BolC8t48948H Brassica oleracea HOM05D002934 ORTHO05D003937 6.5e-12 73.2 47 74.5
BraA08t35346Z Brassica rapa HOM05D002934 ORTHO05D003937 6.5e-12 73.2 47 74.5
Cc05_g00860 Coffea canephora HOM05D002934 ORTHO05D003937 6.5e-12 73.2 47 74.5
COL.COLO4_15321 Corchorus olitorius HOM05D002934 ORTHO05D003937 6.5e-12 73.2 47 76.6
COL.COLO4_21259 Corchorus olitorius HOM05D002934 ORTHO05D003937 6.5e-12 73.2 47 76.6
ECA247G2872 Erigeron canadensis HOM05D002934 ORTHO05D003937 6.5e-12 73.2 47 72.3
HanXRQChr10g0286701 Helianthus annuus HOM05D002934 ORTHO05D003937 6.5e-12 73.2 47 72.3
RcHm_v2.0_Chr3g0459381 Rosa chinensis HOM05D002934 ORTHO05D003937 6.5e-12 73.2 47 72.3
Hund14946 Selenicereus undatus HOM05D002934 ORTHO05D003937 6.5e-12 73.2 47 74.5
CiPaw.10G167100 Carya illinoinensis HOM05D002934 ORTHO05D003937 8.5e-12 72.8 47 76.6
CDE07G2055 Ceratophyllum demersum HOM05D002934 ORTHO05D003937 8.5e-12 72.8 47 74.5
Ca_07804_v3 Cicer arietinum L. HOM05D002934 ORTHO05D003937 8.5e-12 72.8 47 70.2
ClCG04G005090 Citrullus lanatus HOM05D002934 ORTHO05D003937 8.5e-12 72.8 47 74.5
MELO3C025275.2 Cucumis melo HOM05D002934 ORTHO05D003937 8.5e-12 72.8 47 74.5
DCAR_023040 Daucus carota HOM05D002934 ORTHO05D003937 8.5e-12 72.8 47 76.6
Duzib151G0059 Durio zibethinus HOM05D002934 ORTHO05D003937 8.5e-12 72.8 47 74.5
HanXRQChr01g0000311 Helianthus annuus HOM05D002934 ORTHO05D003937 8.5e-12 72.8 47 74.5
Lalb_Chr13g0290291 Lupinus albus HOM05D002934 ORTHO05D003937 8.5e-12 72.8 47 74.5
Os05g0482700 Oryza sativa ssp. japonica HOM05D002934 ORTHO05D003937 8.5e-12 72.8 47 74.5
TAR369G0645 Trochodendron aralioides HOM05D002934 ORTHO05D003937 8.5e-12 72.8 47 74.5
unitig_62.g23250 Utricularia gibba HOM05D002934 ORTHO05D003937 8.5e-12 72.8 47 74.5
CANSAT80G1257 Cannabis sativa HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 74.5
Dinv16924 Davidia involucrata HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 72.3
ECA248G1862 Erigeron canadensis HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 72.3
Thhalv10007256m.g Eutrema salsugineum HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 72.3
Gohir.A02G092100 Gossypium hirsutum HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 74.5
Gohir.D02G108700 Gossypium hirsutum HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 74.5
Gorai.005G125000 Gossypium raimondii HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 74.5
HanXRQChr15g0464621 Helianthus annuus HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 70.2
Medtr7g074570 Medicago truncatula HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 74.5
Oeu033549.1 Olea europaea HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 74.5
PGR031G1733 Punica granatum HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 72.3
Rhsim12G0013400 Rhododendron simsii HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 74.5
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 72.3
SEGI_06068 Sequoiadendron giganteum HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 72.3
Sc20g0007380 Simmondsia chinensis HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 72.3
Sc20g0007500 Simmondsia chinensis HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 72.3
unitig_52.g17320 Utricularia gibba HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 72.3
VMungo1383G2740 Vigna mungo HOM05D002934 ORTHO05D003937 1.1e-11 72.4 47 74.5
AUR62006462 Chenopodium quinoa HOM05D002934 ORTHO05D003937 1.4e-11 72.0 47 72.3
DCAR_013327 Daucus carota HOM05D002934 ORTHO05D003937 1.4e-11 72.0 47 72.3
FvH4_6g09180 Fragaria vesca HOM05D002934 ORTHO05D003937 1.4e-11 72.0 47 72.3
FAN02G1856 Fragaria x ananassa HOM05D002934 ORTHO05D003937 1.4e-11 72.0 47 72.3
FAN14G3266 Fragaria x ananassa HOM05D002934 ORTHO05D003937 1.4e-11 72.0 47 72.3
Gorai.005G012900 Gossypium raimondii HOM05D002934 ORTHO05D003937 1.4e-11 72.0 47 72.3
Oeu003104.3 Olea europaea HOM05D002934 ORTHO05D003937 1.4e-11 72.0 47 72.3
Prupe.6G300000 Prunus persica HOM05D002934 ORTHO05D003937 1.4e-11 72.0 47 72.3
RcHm_v2.0_Chr3g0467071 Rosa chinensis HOM05D002934 ORTHO05D003937 1.4e-11 72.0 47 70.2
Sed0001902 Sechium edule HOM05D002934 ORTHO05D003937 1.4e-11 72.0 47 72.3
TPR.G3169 Trifolium pratense HOM05D002934 ORTHO05D003937 1.4e-11 72.0 47 72.3
GSVIVG01029842001 Vitis vinifera HOM05D002934 ORTHO05D003937 1.4e-11 72.0 47 72.3
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 1.9e-11 71.6 47 70.2
Glyma.09G270500 Glycine max HOM05D002934 ORTHO05D003937 1.9e-11 71.6 47 74.5
Glyma.18G219100 Glycine max HOM05D002934 ORTHO05D003937 1.9e-11 71.6 47 74.5
Lsat_1_v5_gn_9_40081 Lactuca sativa HOM05D002934 ORTHO05D003937 1.9e-11 71.6 47 70.2
MD12G1195300 Malus domestica HOM05D002934 ORTHO05D003937 1.9e-11 71.6 47 72.3
RcHm_v2.0_Chr5g0071081 Rosa chinensis HOM05D002934 ORTHO05D003937 1.9e-11 71.6 47 70.2
MSTRG.14890 Avicennia marina HOM05D002934 ORTHO05D003937 2.5e-11 71.2 47 72.3
CDE06G0641 Ceratophyllum demersum HOM05D002934 ORTHO05D003937 2.5e-11 71.2 47 72.3
CsaV3_4G013550 Cucumis sativus L. HOM05D002934 ORTHO05D003937 2.5e-11 71.2 47 72.3
Lj1g0025652 Lotus japonicus HOM05D002934 ORTHO05D003937 2.5e-11 71.2 47 70.2
Os01g0817700 Oryza sativa ssp. japonica HOM05D002934 ORTHO05D003937 2.5e-11 71.2 47 72.3
PSO339G4103 Papaver somniferum HOM05D002934 ORTHO05D003937 2.5e-11 71.2 47 70.2
Psat1g024760 Pisum sativum HOM05D002934 ORTHO05D003937 2.5e-11 71.2 47 72.3
CSS0023901 Camellia sinensis var. sinensis HOM05D002934 ORTHO05D003937 3.2e-11 70.9 47 70.2
CSS0033821 Camellia sinensis var. sinensis HOM05D002934 ORTHO05D003937 3.2e-11 70.9 47 70.2
Cfa016986 Carpinus fangiana HOM05D002934 ORTHO05D003937 3.2e-11 70.9 47 72.3
Haze_21221 Corylus avellana HOM05D002934 ORTHO05D003937 3.2e-11 70.9 47 72.3
Oeu051396.1 Olea europaea HOM05D002934 ORTHO05D003937 3.2e-11 70.9 47 72.3
Rhsim05G0234700 Rhododendron simsii HOM05D002934 ORTHO05D003937 3.2e-11 70.9 47 70.2
Sp1g08370 Schrenkiella parvula HOM05D002934 ORTHO05D003937 3.2e-11 70.9 47 72.3
Aa31LG1G5210 Aethionema arabicum HOM05D002934 ORTHO05D003937 4.2e-11 70.5 47 70.2
AUR62029818 Chenopodium quinoa HOM05D002934 ORTHO05D003937 4.2e-11 70.5 47 70.2
Lsat_1_v5_gn_8_108400 Lactuca sativa HOM05D002934 ORTHO05D003937 4.2e-11 70.5 47 68.1
Lj2C54T9 Lonicera japonica HOM05D002934 ORTHO05D003937 4.2e-11 70.5 47 68.1
MD04G1180100 Malus domestica HOM05D002934 ORTHO05D003937 4.2e-11 70.5 47 70.2
Duzib212G0650 Durio zibethinus HOM05D002934 ORTHO05D003937 5.5e-11 70.1 47 70.2
Lsat_1_v5_gn_8_161460 Lactuca sativa HOM05D002934 ORTHO05D013123 5.5e-11 70.1 48 66.7
vmacro08741 Vaccinium macrocarpon HOM05D002934 ORTHO05D003937 5.5e-11 70.1 47 74.5
HPP92_022876 Vanilla planifolia HOM05D002934 ORTHO05D003937 5.5e-11 70.1 47 70.2
Gohir.A10G141450 Gossypium hirsutum HOM05D002934 ORTHO05D003937 7.2e-11 69.7 47 72.3
Gohir.D10G125400 Gossypium hirsutum HOM05D002934 ORTHO05D003937 7.2e-11 69.7 47 72.3
Gorai.011G138400 Gossypium raimondii HOM05D002934 ORTHO05D003937 7.2e-11 69.7 47 72.3
HanXRQChr11g0329261 Helianthus annuus HOM05D002934 ORTHO05D003937 7.2e-11 69.7 47 70.2
AL1G20330 Arabidopsis lyrata HOM05D002934 ORTHO05D003937 9.4e-11 69.3 47 70.2
AT1G09780 Arabidopsis thaliana HOM05D002934 ORTHO05D003937 9.4e-11 69.3 47 70.2
BcaC05g29595 Brassica carinata HOM05D002934 ORTHO05D003937 9.4e-11 69.3 47 68.1
Carub.0001s0912 Capsella rubella HOM05D002934 ORTHO05D003937 9.4e-11 69.3 47 70.2
CARHR009750 Cardamine hirsuta HOM05D002934 ORTHO05D003937 9.4e-11 69.3 47 70.2
Ciclev10011402m.g Citrus clementina HOM05D002934 ORTHO05D003937 9.4e-11 69.3 47 68.1
Atru.chr8.38 Acer truncatum HOM05D002934 ORTHO05D003937 1.2e-10 68.9 47 70.2
Actinidia12529 Actinidia chinensis HOM05D002934 ORTHO05D013123 1.2e-10 68.9 47 70.2
FAN09G0756 Fragaria x ananassa HOM05D002934 ORTHO05D003937 1.2e-10 68.9 44 72.7
TWI74G1089 Tripterygium wilfordii HOM05D002934 ORTHO05D003937 1.2e-10 68.9 47 70.2
Zm00001eb149730 Zea mays HOM05D002934 ORTHO05D003937 1.2e-10 68.9 47 68.1
Actinidia22461 Actinidia chinensis HOM05D002934 ORTHO05D003937 1.6e-10 68.6 47 66.0
Eucgr.K01314 Eucalyptus grandis HOM05D002934 ORTHO05D003937 1.6e-10 68.6 47 63.8
Potri.016G142900 Populus trichocarpa HOM05D002934 ORTHO05D003937 1.6e-10 68.6 47 68.1
ATR1127G201 Amborella trichopoda HOM05D002934 ORTHO05D003937 2.1e-10 68.2 47 66.0
THA.LOC104799818 Tarenaya hassleriana HOM05D002934 ORTHO05D003937 2.1e-10 68.2 47 70.2
BcaC05g29597 Brassica carinata HOM05D002934 ORTHO05D003937 2.7e-10 67.8 47 68.1
A05p40190 Brassica napus HOM05D002934 ORTHO05D003937 2.7e-10 67.8 47 68.1
C05p59270 Brassica napus HOM05D002934 ORTHO05D003937 2.7e-10 67.8 47 68.1
BolC5t34570H Brassica oleracea HOM05D002934 ORTHO05D003937 2.7e-10 67.8 47 68.1
Nitab4.5_0006644g0030 Nicotiana tabacum HOM05D002934 ORTHO05D003937 2.7e-10 67.8 47 68.1
Peaxi162Scf00359g01222 Petunia axillaris HOM05D002934 ORTHO05D003937 2.7e-10 67.8 47 68.1
Sp3g07040 Schrenkiella parvula HOM05D002934 ORTHO05D003937 2.7e-10 67.8 47 70.2
Thecc.04G001000 Theobroma cacao HOM05D002934 ORTHO05D003937 3.6e-10 67.4 47 70.2
AL3G19560 Arabidopsis lyrata HOM05D002934 ORTHO05D003937 4.7e-10 67.0 47 68.1
AT3G08590 Arabidopsis thaliana HOM05D002934 ORTHO05D003937 4.7e-10 67.0 47 68.1
HPP92_028104 Vanilla planifolia HOM05D002934 ORTHO05D003937 4.7e-10 67.0 47 66.0
Aa31LG1G5200 Aethionema arabicum HOM05D002934 ORTHO05D003937 6.1e-10 66.6 47 66.0
Nitab4.5_0008321g0010 Nicotiana tabacum HOM05D002934 ORTHO05D003937 7.9e-10 66.2 47 66.0
Potri.006G113300 Populus trichocarpa HOM05D002934 ORTHO05D003937 7.9e-10 66.2 47 68.1
Carub.0003s0772 Capsella rubella HOM05D002934 ORTHO05D003937 1.0e-09 65.9 47 68.1
Thhalv10020418m.g Eutrema salsugineum HOM05D002934 ORTHO05D003937 1.0e-09 65.9 47 68.1
Lsat_1_v5_gn_8_144420 Lactuca sativa HOM05D002934 ORTHO05D013123 1.0e-09 65.9 47 63.8
BcaC05g24850 Brassica carinata HOM05D000600 ORTHO05D000432 1.4e-09 65.5 47 68.1
Os03g0330200 Oryza sativa ssp. japonica HOM05D002934 ORTHO05D003937 1.4e-09 65.5 47 63.8
EL10Ac7g17147 Beta vulgaris HOM05D002934 ORTHO05D003937 1.8e-09 65.1 58 60.3
CAN.G212.1 Capsicum annuum HOM05D002934 ORTHO05D003937 1.8e-09 65.1 47 63.8
Solyc07g044840.3 Solanum lycopersicum HOM05D002934 ORTHO05D003937 1.8e-09 65.1 47 63.8
Sopen07g023400 Solanum pennellii HOM05D002934 ORTHO05D003937 1.8e-09 65.1 47 63.8
CARHR082890 Cardamine hirsuta HOM05D002934 ORTHO05D003937 3.0e-09 64.3 47 66.0
Zm00001eb015770 Zea mays HOM05D002934 ORTHO05D003937 3.9e-09 63.9 47 59.6
PGSC0003DMG400000935 Solanum tuberosum HOM05D002934 ORTHO05D003937 5.1e-09 63.5 47 61.7
PGR004G0010 Punica granatum HOM05D002934 ORTHO05D003937 6.7e-09 63.2 48 62.5
SMO147G0367 Selaginella moellendorffii HOM05D002934 ORTHO05D003937 6.7e-09 63.2 47 59.6
AagrBONN_evm.TU.Sc2ySwM_228.3737 Anthoceros agrestis HOM05D002934 ORTHO05D003937 8.8e-09 62.8 47 57.4
Eucgr.A00869 Eucalyptus grandis HOM05D002934 ORTHO05D003937 3.3e-08 60.8 47 61.7
Sabra04G0158900 Salix brachista HOM05D002934 ORTHO05D003937 4.4e-08 60.5 61 52.5
Lsat_1_v5_gn_2_23081 Lactuca sativa HOM05D002934 ORTHO05D013123 5.7e-08 60.1 55 58.2
CiPaw.09G071800 Carya illinoinensis HOM05D008010 ORTHO05D010085 1.3e-07 58.9 35 80.0
Sabra06G0088200 Salix brachista HOM05D002934 ORTHO05D003937 1.3e-07 58.9 64 51.6
Mapoly0085s0094 Marchantia polymorpha HOM05D002934 ORTHO05D003937 1.7e-07 58.5 47 55.3
Lsat_1_v5_gn_7_56840 Lactuca sativa HOM05D002934 ORTHO05D013123 2.8e-07 57.8 39 66.7
Mapoly0014s0209 Marchantia polymorpha HOM05D002934 ORTHO05D003937 3.7e-07 57.4 47 55.3
Pp3c10_15340 Physcomitrium patens HOM05D002934 ORTHO05D003937 4.8e-07 57.0 47 51.1
Pp3c25_670 Physcomitrium patens HOM05D002934 ORTHO05D003937 4.8e-07 57.0 47 51.1
Pp3c17_2760 Physcomitrium patens HOM05D002934 ORTHO05D003937 8.2e-07 56.2 47 51.1
Pp3c17_2761 Physcomitrium patens HOM05D002934 ORTHO05D003937 8.2e-07 56.2 47 51.1
Aqoxy598s001 Aquilegia oxysepala HOM05D002934 ORTHO05D003937 1.4e-06 55.5 31 80.6
PSO384G1474 Papaver somniferum HOM05D002934 ORTHO05D003937 3.1e-06 54.3 32 75.0
CBR_g36655 Chara braunii HOM05D002934 ORTHO05D003937 4.1e-06 53.9 46 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2425 Anthoceros agrestis HOM05D002934 ORTHO05D003937 7.0e-06 53.1 47 46.8
Hund20698 Selenicereus undatus HOM05D002934 ORTHO05D003937 7.0e-06 53.1 35 65.7


User provided reference genes

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