Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 1.3e-131 473.8 392 100.0
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 2.1e-97 360.1 242 77.3
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 3.6e-97 359.4 242 76.9
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 4.0e-80 302.8 243 68.7
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 4.1e-61 239.6 214 60.3
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.7e-59 234.2 206 61.7
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.7e-59 234.2 206 61.7
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 1.6e-57 227.6 247 53.4
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 4.0e-56 223.0 245 54.3
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 6.8e-56 222.2 244 50.8
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 3.5e-52 209.9 206 54.9
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 1.0e-51 208.4 198 58.6
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 5.6e-50 202.6 202 52.0
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 1.1e-48 198.4 201 56.2
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 4.0e-48 196.4 206 54.9
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 8.9e-48 195.3 207 52.2
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 8.9e-48 195.3 202 51.0
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 9.8e-47 191.8 251 46.6
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 3.2e-45 186.8 212 52.4
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 1.2e-44 184.9 185 55.7
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 1.7e-43 181.0 200 51.0
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 5.0e-43 179.5 187 48.1
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 1.9e-42 177.6 225 48.9
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 1.9e-42 177.6 198 54.0
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 2.5e-42 177.2 198 47.5
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 4.3e-42 176.4 217 49.3
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 9.5e-42 175.3 199 50.3
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 1.2e-41 174.9 243 42.0
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 1.2e-41 174.9 242 41.7
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 2.8e-41 173.7 200 48.5
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 8.1e-41 172.2 208 45.7
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 6.8e-40 169.1 187 46.5
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 1.2e-39 168.3 240 40.4
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 1.2e-39 168.3 200 50.5
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 2.0e-39 167.5 240 40.4
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 2.0e-39 167.5 227 44.5
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 2.0e-39 167.5 187 46.0
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 2.2e-38 164.1 243 40.3
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 4.9e-38 162.9 200 47.0
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 4.9e-38 162.9 171 52.0
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 1.4e-37 161.4 169 51.5
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 3.2e-37 160.2 133 61.7
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 3.2e-37 160.2 190 50.0
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 4.1e-37 159.8 223 44.4
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 1.9e-34 151.0 212 38.7
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 2.5e-34 150.6 200 41.0
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 1.2e-33 148.3 167 47.9
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 2.8e-33 147.1 203 42.4
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 4.7e-33 146.4 204 44.6
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 8.1e-33 145.6 165 50.3
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 1.1e-32 145.2 188 43.1
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 1.8e-32 144.4 184 47.8
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 1.8e-32 144.4 133 59.4
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 3.1e-32 143.7 171 48.5
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 3.1e-32 143.7 215 42.8
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 6.8e-32 142.5 170 48.2
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 9.9e-31 138.7 162 46.9
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 1.7e-30 137.9 185 43.2
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 3.2e-29 133.7 198 43.9
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 4.6e-28 129.8 169 42.6
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 1.0e-27 128.6 165 44.2
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 1.7e-27 127.9 206 41.3
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 2.3e-27 127.5 170 44.1
Migut.M00334 Erythranthe guttata HOM05D007281 ORTHO05D009241 3.9e-27 126.7 157 44.6
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 8.6e-27 125.6 180 40.6
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 6.2e-25 119.4 163 43.6
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 8.1e-25 119.0 172 41.3
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 2.4e-24 117.5 164 41.5
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 4.0e-24 116.7 164 41.5
MD17G1084400 Malus domestica HOM05D007281 ORTHO05D009241 1.2e-23 115.2 185 37.3
Phvul.005G107600 Phaseolus vulgaris HOM05D007281 ORTHO05D009241 1.2e-23 115.2 184 41.8
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 2.6e-23 114.0 123 48.8
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 4.4e-23 113.2 170 42.9
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 4.9e-22 109.8 164 40.2
Prupe.3G231200 Prunus persica HOM05D007281 ORTHO05D009241 1.9e-21 107.8 135 45.2
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 4.2e-21 106.7 95 58.9
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 9.3e-21 105.5 135 46.7
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 1.6e-20 104.8 186 36.6
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 2.7e-20 104.0 136 44.9
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 1.3e-19 101.7 136 47.1
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 1.7e-19 101.3 137 46.7
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 1.7e-19 101.3 135 45.2
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 3.0e-19 100.5 137 46.7
FAN02G4278 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.1e-18 98.6 126 41.3
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 1.9e-18 97.8 137 46.0
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 1.9e-18 97.8 137 46.0
FAN14G4544 Fragaria x ananassa HOM05D007281 ORTHO05D009241 2.5e-18 97.4 126 41.3
FvH4_6g24020 Fragaria vesca HOM05D007281 ORTHO05D009241 3.3e-18 97.1 122 43.4
FAN14G1737 Fragaria x ananassa HOM05D007281 ORTHO05D009241 3.3e-18 97.1 122 43.4
Aa31LG1G2830 Aethionema arabicum HOM05D007281 ORTHO05D009241 5.6e-18 96.3 166 39.2
FvH4_6g44590 Fragaria vesca HOM05D007281 ORTHO05D009241 5.6e-18 96.3 126 40.5
RcHm_v2.0_Chr1g0342741 Rosa chinensis HOM05D007281 ORTHO05D009241 9.6e-18 95.5 158 36.7
Sopen07g028580 Solanum pennellii HOM05D007281 ORTHO05D009241 2.8e-17 94.0 126 42.9
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 4.8e-17 93.2 173 37.0
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 4.8e-17 93.2 172 36.0
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 8.1e-17 92.4 135 43.0
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 1.1e-16 92.0 166 37.3
Os05g0481800 Oryza sativa ssp. japonica HOM05D007281 ORTHO05D009241 2.1e-12 77.8 115 40.0
Zm00001eb290940 Zea mays HOM05D007281 ORTHO05D009241 4.3e-10 70.1 104 38.5
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 5.6e-10 69.7 133 36.1
Nn2g14540 Nelumbo nucifera HOM05D007281 ORTHO05D009241 1.7e-06 58.2 75 42.7


User provided reference genes

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