Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 8.6e-252 873.2 460 100.0
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 1.1e-182 643.7 457 72.4
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 6.7e-180 634.4 457 72.2
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 3.0e-148 529.3 458 62.9
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 4.9e-122 442.2 457 52.7
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 3.9e-119 432.6 457 52.1
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 2.1e-112 410.2 461 49.7
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.3e-111 406.8 459 49.0
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.1e-110 404.4 478 49.8
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 2.2e-106 390.2 458 49.1
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 1.8e-103 380.6 462 47.8
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 3.9e-103 379.4 435 49.4
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.5e-102 376.7 457 46.8
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 3.7e-101 372.9 463 46.4
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 6.2e-101 372.1 457 47.5
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 2.4e-100 370.2 478 46.9
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 2.0e-99 367.1 435 48.5
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 3.2e-97 359.8 456 47.4
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 9.3e-97 358.2 461 46.0
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 2.3e-95 353.6 599 40.4
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 2.6e-91 340.1 458 44.5
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.2e-89 333.2 591 38.6
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.2e-89 333.2 591 38.2
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.2e-88 331.3 591 37.2
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 4.6e-88 329.3 436 48.2
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 1.8e-87 327.4 591 38.1
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 5.7e-86 322.4 588 37.4
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 5.7e-86 322.4 462 43.7
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 2.1e-85 320.5 559 39.2
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 2.1e-85 320.5 456 43.6
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.1e-84 318.2 588 36.9
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 7.6e-83 312.0 439 45.3
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 1.4e-81 307.8 461 43.8
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 2.5e-81 307.0 458 43.0
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 1.0e-79 301.6 429 42.2
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 1.3e-79 301.2 469 42.2
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 5.1e-79 299.3 429 42.4
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 5.1e-79 299.3 434 41.5
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 5.7e-78 295.8 474 40.5
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 5.7e-78 295.8 390 42.8
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 7.4e-78 295.4 393 43.8
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 1.1e-76 291.6 461 41.0
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 2.4e-76 290.4 429 40.6
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 4.5e-75 286.2 429 42.0
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 1.7e-74 284.3 430 41.4
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 2.9e-74 283.5 392 42.6
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 3.6e-72 276.6 549 35.0
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 3.6e-72 276.6 395 42.3
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 7.9e-72 275.4 467 39.4
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 2.3e-71 273.9 450 39.8
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 4.8e-69 266.2 401 43.6
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 5.3e-68 262.7 404 42.8
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 1.1e-65 255.0 395 40.3
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 8.8e-63 245.4 519 32.9
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 4.4e-62 243.0 514 33.1
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 7.4e-62 242.3 658 30.5
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 1.3e-61 241.5 513 32.4
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 4.8e-61 239.6 575 33.6
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 8.2e-61 238.8 441 36.7
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 2.4e-60 237.3 239 52.7
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 9.1e-60 235.3 306 46.7
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 1.6e-59 234.6 306 46.7
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 1.6e-59 234.6 308 46.8
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 7.7e-59 232.3 492 35.0
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 4.2e-57 226.5 402 39.6
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.2e-56 224.9 439 35.1
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 6.1e-56 222.6 516 33.1
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 3.3e-54 216.9 551 30.7
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 1.3e-53 214.9 400 38.0
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.3e-50 204.9 438 36.5
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.7e-50 204.5 406 36.0
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 5.0e-50 203.0 460 33.0
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 8.5e-50 202.2 513 32.7
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 1.1e-49 201.8 374 36.4
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 2.5e-49 200.7 463 33.5
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 3.2e-49 200.3 235 45.1
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 5.5e-49 199.5 276 40.6
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 2.1e-48 197.6 472 35.2
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 1.0e-47 195.3 536 30.2
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 3.4e-46 190.3 630 27.1
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 4.4e-46 189.9 235 47.2
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.3e-45 188.3 334 37.1
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.1e-44 185.3 441 35.6
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 7.0e-44 182.6 560 27.9
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 1.2e-43 181.8 519 28.5
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 1.6e-43 181.4 490 32.0
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 2.0e-43 181.0 470 31.7
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 4.5e-43 179.9 587 27.6
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 1.0e-42 178.7 514 31.5
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 1.2e-40 171.8 319 36.7
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 2.8e-40 170.6 486 32.5
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 4.7e-40 169.9 483 32.1
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 8.0e-40 169.1 528 28.2
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 6.8e-39 166.0 518 29.0
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 6.8e-39 166.0 528 28.2
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 1.2e-38 165.2 672 25.3
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 9.8e-38 162.2 523 28.1
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 3.7e-37 160.2 553 27.8
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 3.7e-37 160.2 553 27.8
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 1.8e-36 157.9 612 27.3
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 1.2e-35 155.2 523 27.7
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 4.5e-35 153.3 623 27.1
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 5.9e-35 152.9 356 32.9
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.0e-34 152.1 254 39.4
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 3.8e-34 150.2 553 26.2
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 1.5e-33 148.3 547 27.4
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 5.6e-33 146.4 341 32.8
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 7.3e-33 146.0 386 31.9
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 1.2e-32 145.2 254 35.8
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.6e-32 144.8 388 32.0
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 3.6e-32 143.7 223 39.9
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 2.0e-30 137.9 388 32.2
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 9.8e-30 135.6 277 36.5
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 9.8e-30 135.6 277 36.5
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 8.3e-29 132.5 316 29.7
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 3.2e-28 130.6 268 33.6
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 4.1e-28 130.2 238 35.3
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 1.0e-26 125.6 388 28.6
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.1e-25 122.1 149 42.3
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 3.3e-25 120.6 115 49.6
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.0e-22 111.3 332 32.2
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 3.5e-19 100.5 283 28.3
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 1.0e-18 99.0 107 48.6
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 2.5e-17 94.4 286 26.9
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 2.5e-17 94.4 286 26.9
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 6.8e-15 86.3 110 41.8
ATR0580G041 Amborella trichopoda HOM05D005385 ORTHO05D006768 3.7e-13 80.5 449 23.4
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 3.7e-13 80.5 118 44.1
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 8.3e-13 79.3 112 42.9
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 4.0e-07 60.5 94 35.1


User provided reference genes

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