Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.5e-164 582.8 297 100.0
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 3.8e-152 541.6 302 91.1
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 7.5e-148 527.3 301 89.4
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 1.9e-143 512.7 302 86.4
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.5e-143 512.3 302 86.8
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 3.6e-142 508.4 300 86.7
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 1.2e-140 503.4 302 85.1
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 1.5e-140 503.1 302 85.4
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 1.5e-140 503.1 300 86.3
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 2.0e-140 502.7 302 85.1
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 7.5e-140 500.7 300 85.0
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 2.4e-138 495.7 302 85.4
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 3.1e-138 495.4 302 84.1
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 4.1e-138 495.0 302 84.4
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 9.2e-138 493.8 302 84.1
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 1.3e-136 490.0 297 83.2
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.9e-136 488.8 303 83.5
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 3.8e-136 488.4 302 84.4
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 5.0e-136 488.0 297 81.8
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 6.6e-136 487.6 303 83.2
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.3e-135 485.0 297 83.8
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 4.3e-135 485.0 312 80.8
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 7.3e-135 484.2 302 83.8
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 7.3e-135 484.2 303 82.5
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 2.8e-134 482.3 297 81.5
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 4.7e-134 481.5 299 82.6
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 4.7e-134 481.5 300 83.7
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.0e-133 480.3 301 81.4
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.0e-133 478.8 297 83.5
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 7.5e-132 474.2 303 78.9
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 7.5e-132 474.2 297 81.8
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 1.3e-131 473.4 297 82.8
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 8.3e-131 470.7 303 81.8
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 3.2e-130 468.8 297 80.8
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 3.0e-128 462.2 294 79.6
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 1.9e-127 459.5 298 80.5
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 4.3e-127 458.4 298 80.2
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 7.3e-127 457.6 299 79.6
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.2e-126 456.8 302 79.5
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 3.6e-126 455.3 294 78.9
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.6e-126 455.3 294 78.9
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 3.6e-126 455.3 302 77.5
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.1e-125 452.2 294 78.2
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 3.4e-124 448.7 292 79.5
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 3.4e-124 448.7 302 76.2
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 5.8e-124 448.0 308 75.6
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 5.8e-124 448.0 290 79.0
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 7.5e-124 447.6 302 77.5
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.3e-123 446.8 295 76.9
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 1.1e-122 443.7 348 71.6
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 3.2e-122 442.2 271 84.1
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 9.2e-122 440.7 301 76.1
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 1.2e-121 440.3 295 76.3
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 1.6e-121 439.9 295 75.6
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 1.6e-121 439.9 297 78.1
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.6e-121 439.9 301 77.4
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 4.6e-121 438.3 300 76.0
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 4.6e-121 438.3 272 82.0
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 7.8e-121 437.6 300 76.0
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 7.8e-121 437.6 295 75.3
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 1.3e-120 436.8 300 75.7
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 1.3e-120 436.8 303 75.6
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 1.3e-120 436.8 295 76.3
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 3.0e-120 435.6 296 76.4
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.0e-120 435.6 293 78.2
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 5.1e-120 434.9 272 82.7
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.5e-119 433.3 292 78.4
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 4.3e-119 431.8 272 82.7
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 7.3e-119 431.0 293 76.5
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 1.2e-118 430.3 298 75.2
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.2e-118 430.3 293 76.5
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.6e-118 429.9 303 75.2
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 4.7e-118 428.3 275 80.7
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 1.4e-117 426.8 297 74.1
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.4e-117 426.8 295 76.3
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 1.8e-117 426.4 299 74.9
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 3.1e-117 425.6 288 77.1
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 4.0e-117 425.2 319 71.2
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 4.0e-117 425.2 300 73.7
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 4.0e-117 425.2 269 82.5
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 6.8e-117 424.5 297 75.1
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 2.0e-116 422.9 298 75.8
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 2.6e-116 422.5 319 71.2
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 7.5e-116 421.0 293 75.4
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.7e-115 419.9 299 74.6
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 1.7e-115 419.9 297 74.4
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 2.9e-115 419.1 302 74.2
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 6.4e-115 417.9 285 77.9
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 2.4e-114 416.0 300 72.3
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 4.1e-114 415.2 305 75.1
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 2.1e-113 412.9 297 72.4
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 6.0e-113 411.4 286 76.9
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 6.0e-113 411.4 285 76.5
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.0e-112 410.6 272 77.9
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.7e-112 409.8 272 77.6
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.0e-112 409.1 253 83.0
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 3.9e-112 408.7 302 72.5
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 3.9e-112 408.7 304 73.7
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 3.9e-112 408.7 257 84.0
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 8.6e-112 407.5 259 82.2
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 1.5e-111 406.8 292 75.0
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.4e-109 400.2 295 72.9
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.8e-109 399.8 245 85.3
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 3.1e-109 399.1 250 82.0
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 4.0e-109 398.7 250 82.0
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 6.8e-109 397.9 250 82.0
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.5e-108 396.7 268 77.6
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 3.8e-107 392.1 272 76.8
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 9.2e-106 387.5 215 89.8
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.2e-105 387.1 246 80.9
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 1.3e-104 383.6 316 67.1
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 1.3e-104 383.6 247 82.2
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 3.3e-103 379.0 254 77.6
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 9.0e-101 370.9 306 66.3
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 7.6e-100 367.9 244 79.5
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.8e-99 365.5 297 66.7
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.3e-95 352.4 214 84.1
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 4.3e-95 352.1 297 65.0
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.8e-93 346.7 224 82.1
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.5e-92 343.6 289 65.1
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 6.4e-91 338.2 282 67.0
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 2.4e-90 336.3 298 64.1
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 9.3e-90 334.3 276 68.1
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 3.4e-84 315.8 246 69.9
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 1.3e-83 313.9 236 73.7
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.4e-83 311.6 179 87.7
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 8.4e-83 311.2 179 86.6
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 7.1e-82 308.1 215 76.7
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 2.5e-79 299.7 301 54.8
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 2.8e-78 296.2 256 62.9
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 6.9e-77 291.6 318 51.3
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 4.5e-76 288.9 273 60.4
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 4.5e-76 288.9 257 63.4
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 7.1e-74 281.6 304 52.6
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 6.0e-73 278.5 236 62.3
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 5.1e-72 275.4 268 57.1
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 1.1e-69 267.7 249 59.8
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.2e-68 264.2 179 72.6
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 1.0e-67 261.2 177 72.3
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.6e-65 252.3 163 78.5
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 1.5e-63 247.3 257 58.4
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 2.0e-63 246.9 139 87.8
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.5e-60 235.7 205 66.3
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 2.4e-53 213.4 173 68.2
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 9.4e-50 201.4 222 46.8
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 5.2e-48 195.7 157 67.5
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 2.6e-47 193.4 144 69.4
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 6.5e-43 178.7 120 80.0
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.7e-38 162.9 111 75.7
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.8e-30 136.0 82 82.9
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.0e-28 130.6 80 80.0
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 5.5e-26 122.5 64 92.2
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 1.3e-19 101.3 66 77.3
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.7e-19 100.9 92 58.7
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.7e-14 84.3 110 52.7
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 2.9e-14 83.6 88 54.5
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.2e-13 80.1 53 73.6
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 7.0e-13 79.0 51 80.4
TAR636G0182 Trochodendron aralioides HOM05D004545 ORTHO05D005420 3.7e-06 56.6 77 48.1


User provided reference genes

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