Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G152700 Carya illinoinensis HOM05D007427 ORTHO05D006413 3.1e-29 132.1 133 100.0
CiPaw.04G107700 Carya illinoinensis HOM05D007427 ORTHO05D006413 5.5e-18 94.7 68 70.6
CiPaw.04G107800 Carya illinoinensis HOM05D007427 ORTHO05D006413 6.1e-17 91.3 68 80.9
QL09p044390 Quercus lobata HOM05D007427 ORTHO05D006413 1.4e-16 90.1 70 77.1
Haze_24760 Corylus avellana HOM05D007427 ORTHO05D006413 1.3e-14 83.6 64 75.0
Duzib138G0914 Durio zibethinus HOM05D007427 ORTHO05D006413 4.1e-13 78.6 60 70.0
Glyma.03G170800 Glycine max HOM05D007427 ORTHO05D006413 5.4e-13 78.2 86 68.6
COL.COLO4_28358 Corchorus olitorius HOM05D007427 ORTHO05D006413 1.6e-12 76.6 63 65.1
Cpa.g.sc8.193 Carica papaya HOM05D007427 ORTHO05D006413 4.5e-12 75.1 58 60.3
Rhsim13G0042300 Rhododendron simsii HOM05D007427 ORTHO05D006413 4.5e-12 75.1 61 70.5
CANSAT01G2272 Cannabis sativa HOM05D007427 ORTHO05D006413 5.9e-12 74.7 81 55.6
Actinidia23744 Actinidia chinensis HOM05D007427 ORTHO05D006413 1.0e-11 73.9 58 70.7
CSS0029156 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 1.0e-11 73.9 60 66.7
CSS0036288 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 1.0e-11 73.9 60 66.7
Thecc.01G231600 Theobroma cacao HOM05D007427 ORTHO05D006413 1.3e-11 73.6 68 58.8
Glyma.19G171900 Glycine max HOM05D007427 ORTHO05D006413 1.7e-11 73.2 61 60.7
QL09p044388 Quercus lobata HOM05D007427 ORTHO05D006413 2.3e-11 72.8 58 72.4
Ciclev10022773m.g Citrus clementina HOM05D007427 ORTHO05D006413 5.0e-11 71.6 74 52.7
Ciclev10022672m.g Citrus clementina HOM05D007427 ORTHO05D006413 6.6e-11 71.2 75 52.0
Lj1g0018605 Lotus japonicus HOM05D007427 ORTHO05D006413 6.6e-11 71.2 61 68.9
SGA_v2.0_scaffold42G16152 Striga asiatica HOM05D007427 ORTHO05D006413 6.6e-11 71.2 74 54.1
Gohir.A07G154400 Gossypium hirsutum HOM05D007427 ORTHO05D006413 1.1e-10 70.5 54 66.7
Gohir.D07G160800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 1.1e-10 70.5 61 60.7
Gorai.001G183700 Gossypium raimondii HOM05D007427 ORTHO05D006413 1.1e-10 70.5 54 66.7
Thecc.01G231700 Theobroma cacao HOM05D007427 ORTHO05D006413 1.9e-10 69.7 67 59.7
Glyma.03G170900 Glycine max HOM05D007427 ORTHO05D006413 2.5e-10 69.3 55 67.3
COL.COLO4_17317 Corchorus olitorius HOM05D007427 ORTHO05D006413 3.3e-10 68.9 61 62.3
Cc01_g17390 Coffea canephora HOM05D007427 ORTHO05D006413 4.3e-10 68.6 56 64.3
Duzib211G0080 Durio zibethinus HOM05D007427 ORTHO05D006413 9.5e-10 67.4 58 65.5
Hma1.2p1_1858F.1_g305540 Hydrangea macrophylla HOM05D007427 ORTHO05D006413 9.5e-10 67.4 56 62.5
Phvul.001G168900 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 9.5e-10 67.4 55 67.3
Gohir.D07G160600 Gossypium hirsutum HOM05D007427 ORTHO05D006413 1.2e-09 67.0 73 54.8
Glyma.19G171800 Glycine max HOM05D007427 ORTHO05D006413 1.6e-09 66.6 69 55.1
Gohir.A07G154300 Gossypium hirsutum HOM05D007427 ORTHO05D006413 1.6e-09 66.6 73 54.8
Medtr7g099670 Medicago truncatula HOM05D007427 ORTHO05D006413 1.6e-09 66.6 61 62.3
PSO017G4218 Papaver somniferum HOM05D007427 ORTHO05D006413 1.6e-09 66.6 66 56.1
Nitab4.5_0001740g0060 Nicotiana tabacum HOM05D007427 ORTHO05D006413 2.8e-09 65.9 63 63.5
Prupe.8G208000 Prunus persica HOM05D007427 ORTHO05D006413 2.8e-09 65.9 61 63.9
Atru.chr5.1886 Acer truncatum HOM05D007427 ORTHO05D006413 3.6e-09 65.5 88 47.7
VMungo1383G3325 Vigna mungo HOM05D007427 ORTHO05D006413 3.6e-09 65.5 54 61.1
Lj1g0008336 Lotus japonicus HOM05D007427 ORTHO05D006413 4.7e-09 65.1 61 59.0
Ca_08774_v3 Cicer arietinum L. HOM05D007427 ORTHO05D006413 6.1e-09 64.7 61 65.6
MELO3C012793.2 Cucumis melo HOM05D007427 ORTHO05D006413 6.1e-09 64.7 55 56.4
PSO063G2436 Papaver somniferum HOM05D007427 ORTHO05D006413 8.0e-09 64.3 65 53.8
Psat3g049800 Pisum sativum HOM05D007427 ORTHO05D006413 8.0e-09 64.3 61 59.0
Gohir.A08G193800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 1.0e-08 63.9 83 47.0
Gohir.D08G211500 Gossypium hirsutum HOM05D007427 ORTHO05D006413 1.0e-08 63.9 83 47.0
Gorai.004G224800 Gossypium raimondii HOM05D007427 ORTHO05D006413 1.0e-08 63.9 83 47.0
Lsat_1_v5_gn_9_11040 Lactuca sativa HOM05D047643 ORTHO05D006413 1.0e-08 63.9 71 56.3
arahy.Tifrunner.gnm1.ann1.KG3A2Z Arachis hypogaea HOM05D007427 ORTHO05D006413 3.1e-08 62.4 62 58.1
DCAR_004704 Daucus carota HOM05D007427 ORTHO05D006413 3.1e-08 62.4 65 52.3
Duzib138G0919 Durio zibethinus HOM05D007427 ORTHO05D006413 4.0e-08 62.0 83 45.8
MD05G1181500 Malus domestica HOM05D007427 ORTHO05D006413 4.0e-08 62.0 70 57.1
Nn3g19877 Nelumbo nucifera HOM05D007427 ORTHO05D006413 4.0e-08 62.0 71 56.3
Dinv19234 Davidia involucrata HOM05D007427 ORTHO05D006413 5.2e-08 61.6 56 53.6
Lalb_Chr25g0289621 Lupinus albus HOM05D007427 ORTHO05D006413 5.2e-08 61.6 58 55.2
RcHm_v2.0_Chr6g0285411 Rosa chinensis HOM05D007427 ORTHO05D006413 5.2e-08 61.6 70 51.4
Sabra02G0191700 Salix brachista HOM05D007427 ORTHO05D006413 6.8e-08 61.2 72 50.0
SGA_v2.0_scaffold1G00704 Striga asiatica HOM05D007427 ORTHO05D006413 6.8e-08 61.2 62 54.8
MSTRG.17537 Avicennia marina HOM05D007427 ORTHO05D006413 1.2e-07 60.5 70 50.0
Sed0020523 Sechium edule HOM05D007427 ORTHO05D006413 1.2e-07 60.5 58 56.9
TAR362G1030 Trochodendron aralioides HOM05D007427 ORTHO05D006413 1.2e-07 60.5 47 72.3
Lalb_Chr01g0019331 Lupinus albus HOM05D007427 ORTHO05D006413 1.5e-07 60.1 59 55.9
ECA236G2240 Erigeron canadensis HOM05D007427 ORTHO05D006413 2.0e-07 59.7 66 50.0
Potri.002G252400 Populus trichocarpa HOM05D007427 ORTHO05D006413 2.0e-07 59.7 69 52.2
MELO3C024163.2 Cucumis melo HOM05D007427 ORTHO05D006413 2.6e-07 59.3 63 54.0
CsaV3_3G039490 Cucumis sativus L. HOM05D007427 ORTHO05D006413 2.6e-07 59.3 64 53.1
Glyma.10G043100 Glycine max HOM05D007427 ORTHO05D006413 2.6e-07 59.3 61 57.4
TWI59G1478 Tripterygium wilfordii HOM05D007427 ORTHO05D006413 2.6e-07 59.3 59 59.3
CANSAT01G2831 Cannabis sativa HOM05D007427 ORTHO05D006413 3.4e-07 58.9 48 56.2
Phvul.007G156700 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 4.4e-07 58.5 61 57.4
ClCG09G009270 Citrullus lanatus HOM05D007427 ORTHO05D006413 5.8e-07 58.2 58 51.7
CsaV3_7G025650 Cucumis sativus L. HOM05D007427 ORTHO05D006413 5.8e-07 58.2 58 53.4
Migut.N02250 Erythranthe guttata HOM05D007427 ORTHO05D006413 5.8e-07 58.2 60 53.3
ClCG09G009340 Citrullus lanatus HOM05D007427 ORTHO05D006413 7.5e-07 57.8 65 50.8
ECA247G2869 Erigeron canadensis HOM05D047643 ORTHO05D006413 9.8e-07 57.4 79 45.6
TWI23G0386 Tripterygium wilfordii HOM05D064064 ORTHO05D006413 2.2e-06 56.2 46 65.2
DCAR_012627 Daucus carota HOM05D007427 ORTHO05D006413 2.9e-06 55.8 70 42.9
FvH4_2g19680 Fragaria vesca HOM05D007427 ORTHO05D006413 2.9e-06 55.8 62 53.2
FAN24G2151 Fragaria x ananassa HOM05D007427 ORTHO05D006413 2.9e-06 55.8 62 53.2
FAN15G2923 Fragaria x ananassa HOM05D007427 ORTHO05D006413 3.7e-06 55.5 62 53.2
FAN27G1788 Fragaria x ananassa HOM05D007427 ORTHO05D006413 3.7e-06 55.5 62 53.2
Gorai.001G183600 Gossypium raimondii HOM05D007427 ORTHO05D006413 3.7e-06 55.5 67 52.2
Cpa.g.sc8.192 Carica papaya HOM05D017908 ORTHO05D020344 4.9e-06 55.1 47 63.8
Nitab4.5_0001657g0050 Nicotiana tabacum HOM05D014142 ORTHO05D006413 4.9e-06 55.1 68 50.0
Medtr1g069085 Medicago truncatula HOM05D007427 ORTHO05D006413 6.4e-06 54.7 61 52.5
unitig_8.g3079 Utricularia gibba HOM05D007427 ORTHO05D006413 6.4e-06 54.7 70 44.3


User provided reference genes

Program Settings