Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 1.1e-78 296.6 152 100.0
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 1.5e-38 163.3 156 66.7
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 1.6e-37 159.8 151 62.3
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 4.8e-34 148.3 157 61.1
Cfa002600 Carpinus fangiana HOM05D008176 ORTHO05D004477 6.5e-23 111.3 159 52.2
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.1e-21 106.3 144 49.3
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 1.4e-20 103.6 147 49.0
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 1.5e-19 100.1 151 47.7
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 1.3e-18 97.1 150 48.7
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 1.7e-18 96.7 148 49.3
RcHm_v2.0_Chr2g0112381 Rosa chinensis HOM05D013332 ORTHO05D004477 8.3e-18 94.4 176 44.3
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 3.1e-17 92.4 148 46.6
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 3.1e-17 92.4 151 45.7
Gohir.A02G129700 Gossypium hirsutum HOM05D008176 ORTHO05D004477 5.4e-17 91.7 143 46.2
FAN19G2695 Fragaria x ananassa HOM05D013332 ORTHO05D004477 9.2e-17 90.9 174 43.1
Gorai.003G041400 Gossypium raimondii HOM05D008176 ORTHO05D004477 2.0e-16 89.7 143 44.8
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 2.0e-16 89.7 147 44.9
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 2.0e-16 89.7 141 46.8
Gohir.D03G040500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.7e-16 89.4 143 44.8
Medtr8g089920 Medicago truncatula HOM05D008176 ORTHO05D004477 2.7e-16 89.4 147 42.2
TPR.G6203 Trifolium pratense HOM05D008176 ORTHO05D004477 3.5e-16 89.0 146 41.8
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 4.5e-16 88.6 146 45.2
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 7.8e-16 87.8 146 43.2
FAN23G0907 Fragaria x ananassa HOM05D013332 ORTHO05D004477 1.0e-15 87.4 170 45.3
FAN28G1274 Fragaria x ananassa HOM05D013332 ORTHO05D004477 1.7e-15 86.7 170 42.4
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 1.7e-15 86.7 149 45.0
FvH4_1g20240 Fragaria vesca HOM05D013332 ORTHO05D004477 2.3e-15 86.3 174 43.1
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.9e-15 85.9 157 43.9
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.9e-15 85.9 149 42.3
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 3.8e-15 85.5 157 44.6
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 5.0e-15 85.1 142 45.8
Psat7g056440 Pisum sativum HOM05D008176 ORTHO05D004477 5.0e-15 85.1 145 42.1
FAN26G3011 Fragaria x ananassa HOM05D013332 ORTHO05D004477 6.6e-15 84.7 174 41.4
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 6.6e-15 84.7 133 45.1
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 6.6e-15 84.7 149 44.3
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 8.6e-15 84.3 156 42.9
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 1.9e-14 83.2 141 43.3
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 2.5e-14 82.8 141 44.0
Lj4g0008028 Lotus japonicus HOM05D008176 ORTHO05D004477 3.3e-14 82.4 141 40.4
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 4.3e-14 82.0 150 43.3
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 5.6e-14 81.6 151 39.1
Glyma.08G133100 Glycine max HOM05D008176 ORTHO05D004477 9.5e-14 80.9 142 42.3
Dinv13234 Davidia involucrata HOM05D008176 ORTHO05D004477 1.2e-13 80.5 134 42.5
Medtr3g086830 Medicago truncatula HOM05D008176 ORTHO05D004477 1.6e-13 80.1 142 39.4
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.1e-13 79.7 159 38.4
TPR.G16006 Trifolium pratense HOM05D008176 ORTHO05D004477 4.7e-13 78.6 145 38.6
Potri.005G072000 Populus trichocarpa HOM05D008176 ORTHO05D004477 1.0e-12 77.4 151 36.4
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 1.8e-12 76.6 153 37.9
Ca_16509_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 3.0e-12 75.9 138 39.1
Glyma.11G242100 Glycine max HOM05D008176 ORTHO05D004477 4.0e-12 75.5 130 39.2
Glyma.05G175800 Glycine max HOM05D008176 ORTHO05D004477 8.9e-12 74.3 139 38.8
Sabra07G0080300 Salix brachista HOM05D008176 ORTHO05D004477 8.9e-12 74.3 142 43.0
Phvul.002G260800 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 1.2e-11 73.9 139 37.4
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 2.0e-11 73.2 137 38.0
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 2.0e-11 73.2 152 40.8
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.6e-11 72.8 130 38.5
SalBow3G2508 Salvia bowleyana HOM05D029310 ORTHO05D004477 2.6e-11 72.8 138 38.4
SalBow3G3284 Salvia bowleyana HOM05D029310 ORTHO05D004477 2.6e-11 72.8 138 38.4
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 2.6e-11 72.8 136 36.0
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 4.4e-11 72.0 130 38.5
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 5.7e-11 71.6 150 38.0
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 9.8e-11 70.9 122 41.0
Gorai.007G235100 Gossypium raimondii HOM05D008176 ORTHO05D004477 9.8e-11 70.9 139 37.4
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 1.7e-10 70.1 159 33.3
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 1.7e-10 70.1 149 37.6
Gohir.D11G218800 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.7e-10 70.1 138 37.7
Sc03g0000170 Simmondsia chinensis HOM05D031888 ORTHO05D004477 1.7e-10 70.1 195 34.4
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 2.2e-10 69.7 152 38.8
Hma1.2p1_0019F.1_g013800 Hydrangea macrophylla HOM05D013332 ORTHO05D004477 2.9e-10 69.3 166 34.9
Manes.13G096700 Manihot esculenta HOM05D008176 ORTHO05D004477 3.7e-10 68.9 135 38.5
PGR031G3049 Punica granatum HOM05D008046 ORTHO05D004477 3.7e-10 68.9 154 37.0
TWI53G0271 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 3.7e-10 68.9 144 38.2
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 4.9e-10 68.6 142 37.3
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 4.9e-10 68.6 165 37.6
Gohir.A11G204400 Gossypium hirsutum HOM05D008176 ORTHO05D004477 8.3e-10 67.8 139 36.7
Psat5g090880 Pisum sativum HOM05D008176 ORTHO05D004477 8.3e-10 67.8 144 34.0
Sc26g0000200 Simmondsia chinensis HOM05D013332 ORTHO05D004477 8.3e-10 67.8 143 37.8
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.1e-09 67.4 142 37.3
Ah.02g126210 Amaranthus hybridus HOM05D031888 ORTHO05D004477 1.4e-09 67.0 177 35.6
Cpa.g.sc55.74 Carica papaya HOM05D008176 ORTHO05D004477 1.4e-09 67.0 160 37.5
Potri.007G097000 Populus trichocarpa HOM05D008176 ORTHO05D004477 1.4e-09 67.0 152 35.5
Sabra02G0078700 Salix brachista HOM05D008046 ORTHO05D004477 1.8e-09 66.6 155 35.5
Manes.02G149300 Manihot esculenta HOM05D008046 ORTHO05D004477 9.2e-09 64.3 152 36.2
Gohir.A01G132600 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.2e-08 63.9 136 36.8
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 1.6e-08 63.5 149 38.3
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 1.6e-08 63.5 125 43.2
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 1.6e-08 63.5 143 37.8
PGSC0003DMG400016791 Solanum tuberosum HOM05D008176 ORTHO05D004477 1.6e-08 63.5 135 36.3
MSTRG.23362 Avicennia marina HOM05D008176 ORTHO05D004477 2.7e-08 62.8 144 39.6
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 2.7e-08 62.8 147 34.0
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 2.7e-08 62.8 146 36.3
SGA_v2.0_scaffold108G30894 Striga asiatica HOM05D008176 ORTHO05D004477 3.5e-08 62.4 162 37.0
CANSAT01G0943 Cannabis sativa HOM05D013332 ORTHO05D004477 4.6e-08 62.0 156 32.7
SalBow5G1479 Salvia bowleyana HOM05D008046 ORTHO05D004477 7.8e-08 61.2 154 34.4
Nitab4.5_0003888g0010 Nicotiana tabacum HOM05D013332 ORTHO05D004477 1.7e-07 60.1 93 47.3
Lalb_Chr11g0075471 Lupinus albus HOM05D008176 ORTHO05D004477 2.3e-07 59.7 141 34.0
Lalb_Chr10g0102531 Lupinus albus HOM05D008046 ORTHO05D004477 3.0e-07 59.3 153 31.4
Sabra05G0058900 Salix brachista HOM05D008176 ORTHO05D004477 3.0e-07 59.3 153 32.0
Gohir.A05G265833 Gossypium hirsutum HOM05D008046 ORTHO05D004477 3.9e-07 58.9 144 38.9
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 3.9e-07 58.9 150 36.7
CSS0043643 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 5.0e-07 58.5 144 32.6
DCAR_014203 Daucus carota HOM05D013332 ORTHO05D004477 5.0e-07 58.5 153 35.3
TWI74G1149 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 5.0e-07 58.5 149 32.9
Eucgr.B00040 Eucalyptus grandis HOM05D008046 ORTHO05D004477 6.6e-07 58.2 145 38.6
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 6.6e-07 58.2 128 35.2
Nitab4.5_0000241g0190 Nicotiana tabacum HOM05D008176 ORTHO05D004477 6.6e-07 58.2 93 46.2
CsaV3_UNG148160 Cucumis sativus L. HOM05D022809 ORTHO05D025100 1.1e-06 57.4 129 36.4
Duzib041G0197 Durio zibethinus HOM05D008046 ORTHO05D004477 1.1e-06 57.4 153 37.3
unitig_32.g11784 Utricularia gibba HOM05D008046 ORTHO05D004477 1.5e-06 57.0 141 35.5
VMungo0251G0397 Vigna mungo HOM05D008176 ORTHO05D004477 1.5e-06 57.0 139 33.8
Cpa.g.sc36.179 Carica papaya HOM05D008046 ORTHO05D004477 1.9e-06 56.6 152 32.2
CDE05G1898 Ceratophyllum demersum HOM05D000157 ORTHO05D000691 1.9e-06 56.6 131 33.6
FAN04G3140 Fragaria x ananassa HOM05D018381 ORTHO05D004477 2.5e-06 56.2 160 33.8
FAN08G1425 Fragaria x ananassa HOM05D018381 ORTHO05D004477 2.5e-06 56.2 160 33.8
FAN13G0458 Fragaria x ananassa HOM05D018381 ORTHO05D004477 2.5e-06 56.2 160 33.8
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 3.3e-06 55.8 157 34.4
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 3.3e-06 55.8 151 37.1
Lalb_Chr23g0270371 Lupinus albus HOM05D008046 ORTHO05D004477 5.6e-06 55.1 145 33.8
Haze_18268 Corylus avellana HOM05D008046 ORTHO05D004477 7.3e-06 54.7 151 31.1
Haze_18269 Corylus avellana HOM05D008046 ORTHO05D004477 7.3e-06 54.7 151 31.1
MELO3C017596.2 Cucumis melo HOM05D022809 ORTHO05D025100 7.3e-06 54.7 131 36.6
RcHm_v2.0_Chr7g0242321 Rosa chinensis HOM05D018381 ORTHO05D004477 7.3e-06 54.7 157 34.4
Lalb_Chr12g0203981 Lupinus albus HOM05D008176 ORTHO05D004477 9.5e-06 54.3 128 35.2
Prupe.1G522800 Prunus persica HOM05D018381 ORTHO05D004477 9.5e-06 54.3 146 34.2
Sopen05g029880 Solanum pennellii HOM05D008176 ORTHO05D004477 9.5e-06 54.3 131 33.6


User provided reference genes

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