Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 7.2e-195 683.7 341 100.0
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 1.2e-128 463.8 331 74.0
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 3.3e-123 445.7 340 69.7
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 2.4e-102 376.3 341 60.1
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 4.2e-102 375.6 327 62.1
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 2.7e-101 372.9 329 62.9
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 8.7e-100 367.9 327 61.2
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 1.5e-99 367.1 330 60.0
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 4.3e-99 365.5 327 62.1
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 2.8e-98 362.8 326 60.1
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 3.7e-98 362.5 337 60.5
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 4.5e-96 355.5 330 59.1
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 1.3e-95 354.0 331 58.0
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 2.2e-95 353.2 326 60.1
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 1.1e-94 350.9 327 58.7
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 2.5e-94 349.7 330 58.5
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 5.5e-94 348.6 312 62.2
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 7.9e-93 344.7 326 56.7
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 1.8e-92 343.6 329 57.4
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 8.7e-92 341.3 330 58.8
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 8.7e-92 341.3 328 56.4
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 2.5e-91 339.7 333 55.6
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 3.3e-91 339.3 332 56.3
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 5.7e-91 338.6 333 55.6
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 1.3e-90 337.4 328 56.4
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 2.0e-88 330.1 331 55.0
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 3.4e-88 329.3 330 54.8
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 7.6e-88 328.2 326 57.1
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 1.9e-86 323.6 339 54.6
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 4.2e-86 322.4 334 53.3
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 7.2e-86 321.6 330 54.8
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 1.6e-85 320.5 333 54.4
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 1.6e-85 320.5 354 55.6
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 2.7e-85 319.7 328 56.4
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 3.0e-84 316.2 326 54.6
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 6.7e-84 315.1 328 51.8
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 1.9e-83 313.5 326 54.3
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 2.5e-83 313.2 332 56.3
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 7.4e-83 311.6 333 54.1
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 7.4e-83 311.6 328 55.8
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 7.4e-83 311.6 327 52.3
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 1.6e-82 310.5 329 54.4
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 4.8e-82 308.9 328 52.7
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 6.3e-82 308.5 337 54.0
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 6.3e-82 308.5 330 51.8
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 1.4e-81 307.4 341 50.4
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 6.9e-81 305.1 280 60.0
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 1.2e-80 304.3 330 52.1
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 1.5e-80 303.9 329 52.3
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 2.0e-80 303.5 330 51.8
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 2.6e-80 303.1 330 51.8
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 1.3e-79 300.8 326 50.9
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 1.3e-79 300.8 331 51.7
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 5.0e-79 298.9 326 50.6
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 6.5e-79 298.5 330 51.2
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 8.5e-79 298.1 327 53.5
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 1.4e-78 297.4 332 52.1
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 3.2e-78 296.2 326 51.8
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 9.4e-78 294.7 332 49.7
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 2.1e-77 293.5 327 50.5
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 4.6e-77 292.4 329 50.2
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 6.1e-77 292.0 333 48.6
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 2.3e-76 290.0 310 51.6
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 8.8e-76 288.1 332 48.2
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 1.5e-75 287.3 336 49.4
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 2.0e-75 287.0 332 49.7
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.4e-73 280.8 301 51.8
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 3.1e-73 279.6 326 49.7
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 4.1e-73 279.3 329 49.5
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 5.3e-73 278.9 406 43.6
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 1.2e-72 277.7 339 47.8
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 4.5e-72 275.8 351 48.4
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 2.9e-71 273.1 294 52.0
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 3.2e-70 269.6 444 41.9
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 2.1e-69 266.9 313 50.8
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 5.2e-68 262.3 332 47.6
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 5.2e-68 262.3 317 48.9
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 1.3e-63 247.7 308 46.4
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.7e-63 247.3 210 62.4
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 3.8e-63 246.1 352 44.0
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 1.9e-62 243.8 327 44.3
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 1.9e-62 243.8 353 46.7
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 1.9e-62 243.8 343 44.3
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 5.5e-62 242.3 200 59.5
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 1.6e-61 240.7 189 64.6
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 1.0e-60 238.0 326 44.2
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 1.5e-59 234.2 326 44.2
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 7.5e-59 231.9 332 45.2
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.7e-58 230.7 194 59.8
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 1.7e-58 230.7 361 42.1
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 2.4e-57 226.9 200 59.5
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 1.4e-52 211.1 319 41.7
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 8.8e-52 208.4 270 45.6
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 1.8e-49 200.7 332 40.1
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 1.6e-48 197.6 179 59.8
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 1.0e-47 194.9 338 40.5
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 8.5e-47 191.8 346 38.4
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.5e-46 190.3 214 52.3
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 1.6e-45 187.6 461 33.8
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 6.3e-42 175.6 238 47.1
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 1.1e-41 174.9 368 33.7
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 5.4e-41 172.6 151 61.6
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.1e-38 164.9 203 46.3
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.9e-38 164.1 338 37.3
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 1.0e-36 158.3 232 41.8
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 4.4e-27 126.3 172 40.1
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 8.6e-23 112.1 79 72.2
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.2e-19 101.7 116 48.3
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.7e-18 97.8 54 85.2
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 1.7e-18 97.8 85 60.0
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 4.9e-18 96.3 198 33.8
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 6.6e-15 85.9 244 30.3
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.9e-14 84.3 67 59.7
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 1.2e-13 81.6 87 48.3
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 1.8e-12 77.8 153 36.6
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 2.0e-11 74.3 47 68.1
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.4e-11 73.6 112 43.8
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 5.8e-11 72.8 91 46.2
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 5.4e-09 66.2 80 43.8


User provided reference genes

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