Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 5.4e-187 657.5 336 100.0
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 1.1e-147 526.9 337 79.5
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 1.1e-147 526.9 337 79.5
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 2.5e-144 515.8 339 77.9
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 8.0e-130 467.6 341 71.8
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 4.1e-118 428.7 329 68.7
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 1.6e-117 426.8 326 66.9
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 2.9e-116 422.5 331 66.2
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 2.9e-116 422.5 331 66.2
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 2.9e-116 422.5 331 66.2
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 2.9e-116 422.5 331 66.2
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 4.7e-114 415.2 331 65.9
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 5.2e-113 411.8 328 66.5
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 6.8e-113 411.4 328 65.2
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.5e-112 410.2 334 65.3
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 1.5e-112 410.2 330 65.5
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 5.7e-112 408.3 334 65.9
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 3.1e-110 402.5 338 62.4
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 5.9e-109 398.3 327 63.0
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.3e-108 397.1 329 64.1
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 1.7e-108 396.7 329 64.1
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 2.9e-108 396.0 354 60.2
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 5.0e-108 395.2 330 64.8
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 6.6e-108 394.8 330 64.5
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 1.5e-107 393.7 329 64.7
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.5e-107 393.7 329 65.0
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 2.5e-107 392.9 333 63.1
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 2.5e-107 392.9 328 64.3
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 4.2e-107 392.1 328 61.3
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 1.6e-106 390.2 327 65.1
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 2.1e-106 389.8 325 63.7
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 2.1e-106 389.8 327 61.2
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 4.7e-106 388.7 332 62.0
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 1.0e-105 387.5 326 62.6
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 3.0e-105 386.0 335 62.7
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 3.0e-105 386.0 325 63.1
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 1.2e-104 384.0 335 59.7
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 4.4e-104 382.1 328 62.2
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 9.8e-104 380.9 311 64.0
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 4.9e-103 378.6 331 59.5
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 6.3e-103 378.3 332 59.6
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 1.1e-102 377.5 340 60.3
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 2.4e-102 376.3 328 61.9
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 3.1e-102 375.9 328 61.0
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 3.1e-102 375.9 327 62.1
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 2.0e-101 373.2 332 59.6
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 2.7e-101 372.9 337 60.8
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 2.7e-101 372.9 333 63.1
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 3.5e-101 372.5 333 63.1
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 7.8e-101 371.3 335 58.5
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 1.0e-100 370.9 340 58.8
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 3.9e-100 369.0 319 61.4
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 3.9e-100 369.0 326 60.1
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 3.9e-100 369.0 283 67.1
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 8.6e-100 367.9 326 61.3
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 1.1e-99 367.5 327 59.0
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 1.1e-99 367.5 331 59.5
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 3.3e-99 365.9 332 62.0
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 7.3e-99 364.8 326 58.6
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 2.8e-98 362.8 334 59.9
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 8.0e-98 361.3 332 59.6
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 2.3e-97 359.8 332 59.3
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 2.3e-97 359.8 337 59.1
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 3.1e-97 359.4 338 58.9
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 1.2e-96 357.5 341 59.5
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 2.2e-95 353.2 336 58.9
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 4.9e-95 352.1 335 57.9
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.1e-94 350.9 331 57.7
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 1.4e-94 350.5 327 57.5
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 1.4e-94 350.5 280 62.5
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 3.2e-94 349.4 330 56.7
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 4.1e-94 349.0 326 57.1
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 1.6e-93 347.1 323 57.6
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 2.0e-93 346.7 335 55.5
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 2.0e-93 346.7 360 55.3
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 2.7e-93 346.3 338 57.4
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.0e-92 344.4 328 57.6
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 1.3e-92 344.0 332 57.2
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 8.6e-92 341.3 362 53.6
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 8.6e-92 341.3 362 53.6
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 1.9e-91 340.1 336 56.0
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 2.5e-91 339.7 331 55.0
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 3.3e-91 339.3 337 54.3
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 1.6e-90 337.0 337 57.6
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 2.1e-90 336.7 340 57.4
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 4.7e-90 335.5 334 56.3
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 6.2e-90 335.1 326 54.3
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 2.3e-89 333.2 333 55.9
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 7.5e-88 328.2 340 56.8
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 9.8e-88 327.8 340 57.1
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 2.2e-87 326.6 330 55.5
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 1.1e-86 324.3 325 53.8
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.2e-85 320.9 329 54.1
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 4.6e-85 318.9 331 55.0
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 9.9e-80 301.2 330 48.8
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 4.6e-77 292.4 336 49.7
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 7.3e-75 285.0 331 48.9
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 2.6e-72 276.6 170 74.1
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 2.6e-72 276.6 213 62.4
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 1.4e-70 270.8 323 46.7
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 4.8e-66 255.8 164 70.1
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 6.9e-65 251.9 323 44.6
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 2.0e-64 250.4 343 42.9
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 3.4e-64 249.6 326 43.9
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 4.9e-63 245.7 324 41.0
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 3.2e-62 243.0 296 47.3
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 7.3e-59 231.9 206 55.3
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 1.4e-57 227.6 329 42.9
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 4.0e-57 226.1 238 54.6
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 4.0e-57 226.1 361 37.4
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.2e-56 224.6 129 79.1
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 6.9e-49 198.7 292 46.9
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 7.6e-48 195.3 128 69.5
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 2.7e-45 186.8 344 34.3
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.8e-44 184.1 161 54.0
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 1.4e-41 174.5 292 43.8
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 2.4e-41 173.7 216 47.2
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 3.4e-40 169.9 332 34.9
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 3.9e-36 156.4 328 36.3
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.2e-32 144.8 229 43.7
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 6.1e-29 132.5 86 69.8
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 8.8e-28 128.6 334 29.3
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 1.4e-25 121.3 124 60.5
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 4.1e-25 119.8 149 51.0
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 1.4e-22 111.3 62 80.6
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.4e-22 111.3 87 57.5
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.1e-19 101.7 90 56.7
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 3.1e-17 93.6 60 71.7
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 4.1e-17 93.2 132 32.6
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.3e-15 88.2 132 44.7
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 1.5e-11 74.7 105 38.1
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.2e-08 65.1 58 55.2
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 5.9e-08 62.8 382 23.8
MCO14G569 Micromonas commoda HOM05D033910 ORTHO05D034414 1.9e-06 57.8 151 22.5
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 3.2e-06 57.0 81 48.1


User provided reference genes

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