Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.3e-88 328.9 172 100.0
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 4.0e-77 291.6 173 90.2
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 4.0e-77 291.6 173 90.2
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 2.3e-64 249.2 173 79.2
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 3.0e-64 248.8 172 77.9
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 3.0e-64 248.8 171 78.4
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 1.1e-63 246.9 172 78.5
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 2.1e-62 242.7 185 72.4
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.8e-62 242.3 171 74.3
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 6.2e-62 241.1 174 74.1
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 1.1e-61 240.4 178 76.4
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 3.1e-61 238.8 186 71.0
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 5.2e-61 238.0 166 76.5
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 1.2e-60 236.9 176 72.7
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.5e-60 236.5 175 73.1
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.6e-60 235.7 175 73.1
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.6e-60 235.7 175 73.1
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 2.6e-60 235.7 201 64.2
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 4.4e-60 235.0 189 70.9
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 4.4e-60 235.0 168 73.2
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 7.6e-60 234.2 166 74.7
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 1.3e-59 233.4 183 67.2
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 2.2e-59 232.6 170 72.9
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.9e-59 232.3 177 71.2
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.8e-59 231.9 175 71.4
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 4.9e-59 231.5 174 71.8
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 1.4e-58 229.9 168 75.0
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.9e-58 229.6 176 69.9
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 1.9e-58 229.6 186 68.8
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 1.9e-58 229.6 186 68.8
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 3.2e-58 228.8 174 71.3
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 4.2e-58 228.4 175 69.7
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 4.2e-58 228.4 169 70.4
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 5.4e-58 228.0 179 69.8
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 5.4e-58 228.0 175 70.9
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 5.4e-58 228.0 168 72.6
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.2e-57 226.9 169 70.4
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 1.6e-57 226.5 191 66.5
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 2.7e-57 225.7 178 69.1
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 2.7e-57 225.7 176 72.2
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 4.6e-57 224.9 185 66.5
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 4.6e-57 224.9 175 71.4
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 6.0e-57 224.6 171 72.5
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.0e-56 223.8 167 71.9
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.3e-56 223.4 194 67.5
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 1.3e-56 223.4 173 66.5
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.3e-56 223.4 168 70.8
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.3e-56 223.4 180 67.2
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 1.7e-56 223.0 182 69.8
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 6.6e-56 221.1 184 67.9
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 8.7e-56 220.7 166 72.9
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 1.1e-55 220.3 175 70.3
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 1.1e-55 220.3 180 64.4
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.5e-55 219.9 174 69.0
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 2.5e-55 219.2 174 69.0
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 4.3e-55 218.4 165 70.3
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.6e-55 218.0 176 68.2
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 5.6e-55 218.0 131 83.2
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 7.3e-55 217.6 179 66.5
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 9.6e-55 217.2 167 70.1
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.3e-54 216.9 164 73.2
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.1e-54 216.1 184 63.6
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 3.6e-54 215.3 203 63.1
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 4.8e-54 214.9 185 63.8
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.8e-54 214.9 167 69.5
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 6.2e-54 214.5 175 70.9
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 1.1e-53 213.8 170 69.4
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.4e-53 213.4 167 68.9
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 3.1e-53 212.2 190 62.1
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 4.0e-53 211.8 166 68.1
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 5.3e-53 211.5 167 68.3
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 5.3e-53 211.5 183 65.6
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 9.0e-53 210.7 189 60.3
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 1.2e-52 210.3 189 63.0
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 1.5e-52 209.9 166 66.3
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 2.6e-52 209.1 181 66.9
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 4.5e-52 208.4 191 60.7
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 5.8e-52 208.0 179 65.9
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 5.8e-52 208.0 179 65.9
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 5.8e-52 208.0 179 65.9
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 5.8e-52 208.0 180 65.6
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 1.7e-51 206.5 185 61.1
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 4.9e-51 204.9 204 57.4
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 8.4e-51 204.1 135 78.5
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 1.9e-50 203.0 172 65.7
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 2.4e-50 202.6 193 59.6
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 4.2e-50 201.8 173 65.3
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 5.4e-50 201.4 173 64.7
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 9.3e-50 200.7 176 64.2
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 9.3e-50 200.7 175 64.6
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 9.3e-50 200.7 178 65.2
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.2e-49 200.3 178 65.2
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 1.6e-49 199.9 175 64.0
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 1.6e-49 199.9 175 64.6
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 3.5e-49 198.7 136 75.7
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 1.0e-48 197.2 165 60.6
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 1.8e-48 196.4 151 71.5
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 3.0e-48 195.7 176 63.6
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.0e-48 195.7 173 64.2
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 1.1e-47 193.7 189 58.2
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 1.1e-47 193.7 180 62.2
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 1.5e-47 193.4 173 63.0
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 3.3e-47 192.2 186 59.7
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 2.8e-46 189.1 173 62.4
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 2.8e-46 189.1 173 62.4
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 3.7e-46 188.7 167 60.5
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 6.2e-46 188.0 190 58.4
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 2.4e-45 186.0 177 59.9
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 5.3e-45 184.9 176 59.7
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 5.3e-45 184.9 120 75.0
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 4.5e-44 181.8 167 61.7
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 9.9e-44 180.6 151 68.2
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.9e-43 179.1 167 62.3
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 6.4e-43 177.9 173 59.0
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.9e-39 166.4 140 60.7
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.5e-39 166.0 177 56.5
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 5.6e-39 164.9 194 49.0
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.3e-38 163.7 141 66.7
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 1.3e-38 163.7 92 87.0
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 3.1e-37 159.1 196 49.5
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 9.0e-37 157.5 144 60.4
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 7.1e-34 147.9 123 65.0
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 1.5e-31 140.2 102 66.7
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 2.8e-30 136.0 121 65.3
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.4e-29 133.7 112 58.0
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 1.4e-29 133.7 103 65.0
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 3.1e-29 132.5 103 64.1
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 9.0e-29 131.0 98 72.4
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 5.9e-28 128.3 103 65.0
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 1.7e-27 126.7 106 62.3
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 1.7e-27 126.7 108 58.3
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 3.8e-27 125.6 107 56.1
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 6.5e-27 124.8 119 54.6
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 1.2e-25 120.6 121 58.7
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.6e-25 120.2 175 46.9
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 3.0e-24 115.9 115 56.5
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 3.9e-24 115.5 106 53.8
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.5e-23 112.8 109 56.0
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 4.3e-23 112.1 93 62.4
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 4.1e-21 105.5 98 53.1
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.5e-20 103.6 96 65.6
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 2.0e-20 103.2 99 53.5
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 2.6e-20 102.8 107 49.5
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 6.5e-19 98.2 71 64.8
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.5e-18 96.3 64 78.1
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 4.2e-18 95.5 119 52.9
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 9.4e-18 94.4 67 73.1
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 1.4e-16 90.5 102 44.1
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 1.8e-16 90.1 101 50.5
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 6.7e-16 88.2 87 52.9
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 6.7e-16 88.2 98 41.8
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 2.6e-12 76.3 139 35.3


User provided reference genes

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