Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.7e-185 652.5 325 100.0
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 5.2e-118 428.3 323 68.7
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 2.3e-110 402.9 321 66.0
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 2.4e-107 392.9 336 61.9
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 1.6e-106 390.2 322 64.3
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 1.3e-105 387.1 322 66.1
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 2.7e-82 309.7 333 53.8
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 1.4e-78 297.4 330 48.5
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 3.2e-75 286.2 330 48.8
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 3.2e-75 286.2 326 52.5
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 6.6e-73 278.5 333 48.9
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.1e-72 277.7 341 48.7
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 1.1e-72 277.7 325 51.1
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 2.5e-72 276.6 311 50.5
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 2.1e-71 273.5 341 48.7
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 2.8e-71 273.1 339 47.8
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.6e-71 272.7 321 49.8
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 1.8e-70 270.4 332 47.0
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 2.4e-70 270.0 305 51.1
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.3e-68 264.2 344 46.2
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 1.7e-68 263.8 326 47.9
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 2.9e-68 263.1 322 49.1
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 3.8e-68 262.7 339 49.3
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 2.1e-66 256.9 324 47.8
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.3e-63 247.7 337 44.8
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 1.6e-63 247.3 333 46.8
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 2.8e-63 246.5 176 71.0
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 4.0e-62 242.7 188 65.4
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 9.0e-62 241.5 322 46.6
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 9.9e-61 238.0 325 47.4
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.9e-60 236.5 207 62.3
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 2.9e-60 236.5 207 62.3
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 1.4e-59 234.2 322 46.0
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.4e-59 234.2 322 46.6
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.0e-57 228.0 328 47.6
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.8e-57 227.3 330 43.0
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 3.9e-57 226.1 333 43.2
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.9e-57 226.1 318 48.4
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 3.9e-57 226.1 211 58.3
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 5.6e-56 222.2 334 45.8
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 5.6e-56 222.2 328 46.0
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 2.1e-55 220.3 327 45.0
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 8.1e-55 218.4 177 63.3
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 2.4e-54 216.9 331 46.5
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 1.5e-53 214.2 328 42.7
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.7e-52 210.7 160 67.5
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 3.2e-51 206.5 334 39.2
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 1.2e-50 204.5 319 39.8
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 4.3e-48 196.1 230 50.4
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 7.4e-48 195.3 229 52.4
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 7.4e-48 195.3 299 41.8
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 6.2e-47 192.2 330 40.3
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 2.2e-44 183.7 208 50.0
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 4.9e-44 182.6 337 37.1
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 4.9e-44 182.6 337 37.1
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.2e-42 177.9 337 39.5
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.6e-42 177.6 315 38.7
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 7.9e-42 175.3 294 39.8
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 3.0e-41 173.3 335 35.8
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 3.0e-41 173.3 314 36.3
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 5.7e-40 169.1 174 50.6
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 1.3e-39 167.9 242 44.6
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 4.8e-39 166.0 268 40.7
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 1.8e-38 164.1 300 36.3
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 3.1e-38 163.3 283 37.5
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 6.9e-38 162.2 272 39.3
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 9.0e-38 161.8 296 35.5
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 9.0e-38 161.8 296 35.5
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 1.5e-37 161.0 253 39.9
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.5e-37 161.0 311 36.0
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 2.0e-37 160.6 173 48.0
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 7.6e-37 158.7 313 37.1
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 7.6e-37 158.7 269 40.9
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 7.6e-37 158.7 269 40.9
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 5.0e-36 156.0 234 42.7
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 1.1e-35 154.8 207 43.5
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 1.4e-35 154.5 142 54.2
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 3.2e-35 153.3 193 44.6
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 3.2e-35 153.3 324 36.4
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 3.2e-35 153.3 142 52.8
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 9.3e-35 151.8 281 40.2
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 1.2e-34 151.4 142 53.5
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.2e-34 151.4 142 53.5
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 1.2e-34 151.4 142 53.5
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 1.2e-34 151.4 142 53.5
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 1.2e-34 151.4 281 40.2
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.6e-34 151.0 268 37.7
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 1.6e-34 151.0 185 48.6
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 2.1e-34 150.6 179 48.6
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 2.1e-34 150.6 258 36.0
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 4.6e-34 149.4 315 34.9
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 4.6e-34 149.4 159 47.2
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 1.3e-33 147.9 175 46.9
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 3.0e-33 146.7 142 50.7
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 3.9e-33 146.4 175 41.7
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 5.1e-33 146.0 169 47.3
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 5.1e-33 146.0 271 38.0
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 6.7e-33 145.6 258 39.9
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.9e-32 144.1 286 36.0
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 2.5e-32 143.7 148 48.6
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 4.3e-32 142.9 196 41.8
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 4.3e-32 142.9 151 53.6
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 5.7e-32 142.5 150 50.0
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 1.3e-31 141.4 165 44.8
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.6e-31 141.0 278 37.1
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 1.6e-31 141.0 160 44.4
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 4.8e-31 139.4 170 44.1
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 1.1e-30 138.3 142 52.8
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 2.4e-30 137.1 316 31.0
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 2.6e-29 133.7 357 31.1
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 7.7e-29 132.1 142 45.1
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 1.0e-28 131.7 170 46.5
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 2.2e-28 130.6 113 58.4
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 5.0e-28 129.4 113 57.5
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 6.5e-28 129.0 291 34.4
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 1.9e-27 127.5 113 57.5
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.9e-27 127.5 113 57.5
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 4.2e-27 126.3 315 34.3
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 5.5e-27 125.9 149 49.0
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 7.9e-26 122.1 155 49.7
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 2.3e-25 120.6 331 32.0
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 8.2e-23 112.1 114 50.9
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 1.5e-21 107.8 119 48.7
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 3.4e-21 106.7 133 45.1
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 6.5e-20 102.4 97 54.6
Lj2C552G1 Lonicera japonica HOM05D005306 ORTHO05D006158 8.5e-20 102.1 216 38.0
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.1e-19 101.7 147 38.1
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 2.5e-19 100.5 174 36.2
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 4.2e-19 99.8 242 34.3
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 2.2e-15 87.4 127 40.9
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 1.8e-14 84.3 127 40.2
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 2.6e-13 80.5 82 50.0
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 2.6e-13 80.5 224 29.9
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 5.0e-12 76.3 235 31.1
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 3.2e-11 73.6 324 29.3
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 5.5e-11 72.8 140 34.3
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 1.0e-09 68.6 119 37.0
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 4.0e-09 66.6 129 33.3
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 1.5e-08 64.7 102 36.3
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 4.4e-08 63.2 101 37.6


User provided reference genes

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