Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 9.1e-252 873.2 485 100.0
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 1.9e-164 583.2 516 69.4
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 1.4e-159 567.0 485 69.3
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 1.8e-154 550.1 500 64.4
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 1.4e-151 540.4 485 65.6
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 7.6e-150 534.6 489 63.4
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.4e-148 530.4 487 63.2
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.9e-148 530.0 494 61.7
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 2.5e-148 529.6 498 63.3
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 3.0e-146 522.7 467 64.9
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 2.5e-145 519.6 476 63.9
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 1.2e-142 510.8 486 62.1
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 2.6e-142 509.6 516 59.5
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 2.2e-141 506.5 486 61.9
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 1.9e-140 503.4 485 62.9
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 2.7e-139 499.6 468 63.0
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 1.0e-138 497.7 486 59.1
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 2.3e-138 496.5 473 62.2
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 3.0e-138 496.1 473 62.2
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 7.4e-137 491.5 485 60.2
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 1.3e-136 490.7 437 64.3
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.7e-136 490.3 485 60.2
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 2.2e-136 490.0 516 58.1
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 8.2e-136 488.0 476 60.9
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.1e-135 487.6 473 60.3
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 6.9e-135 485.0 488 59.8
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 2.6e-134 483.0 476 61.8
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 1.0e-133 481.1 483 59.0
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 2.2e-133 479.9 338 78.4
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 2.9e-133 479.6 483 59.4
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 3.8e-133 479.2 461 60.1
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 1.9e-132 476.9 485 59.4
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 2.1e-131 473.4 483 59.2
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 3.9e-130 469.2 379 70.4
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 6.7e-130 468.4 489 59.5
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 1.1e-129 467.6 489 57.7
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 2.6e-129 466.5 455 61.1
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 3.3e-129 466.1 406 65.5
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 7.4e-129 464.9 463 59.2
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 7.4e-129 464.9 476 60.1
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 1.3e-128 464.2 456 60.7
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.3e-128 464.2 442 60.9
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 2.2e-128 463.4 481 58.6
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 2.2e-128 463.4 485 58.1
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 3.7e-128 462.6 495 57.8
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 6.3e-128 461.8 468 59.4
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 6.3e-128 461.8 454 60.6
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 6.3e-128 461.8 440 61.1
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 1.1e-127 461.1 423 61.9
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 1.1e-127 461.1 490 57.8
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 4.1e-127 459.1 426 62.2
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 5.3e-127 458.8 495 57.4
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 1.2e-126 457.6 479 58.2
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 5.9e-126 455.3 473 58.6
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 2.2e-125 453.4 461 59.4
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 2.2e-125 453.4 439 62.2
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 2.2e-125 453.4 560 51.1
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 3.8e-125 452.6 456 59.9
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 1.6e-123 447.2 488 57.2
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 3.6e-123 446.0 454 58.6
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 8.0e-123 444.9 490 56.9
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 2.3e-122 443.4 436 58.3
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 5.2e-122 442.2 489 56.0
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 6.7e-122 441.8 466 58.6
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 6.7e-122 441.8 342 73.1
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 8.8e-122 441.4 479 57.2
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 5.7e-121 438.7 491 56.4
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.2e-120 436.8 466 57.1
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.2e-120 436.8 466 57.1
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 2.2e-120 436.8 490 54.3
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 1.1e-119 434.5 491 55.0
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 1.4e-119 434.1 456 57.0
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.2e-117 426.8 466 56.0
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 3.8e-117 426.0 491 55.2
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 5.0e-117 425.6 513 53.2
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 1.5e-116 424.1 456 57.9
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 1.5e-116 424.1 489 54.6
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 1.9e-116 423.7 486 54.1
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 3.2e-116 422.9 494 55.1
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 4.2e-116 422.5 492 54.3
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.6e-115 420.6 466 55.6
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 1.6e-115 420.6 489 54.8
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 2.1e-115 420.2 380 65.0
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.7e-115 419.9 482 53.9
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 4.7e-115 419.1 475 54.1
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 1.0e-114 417.9 486 53.5
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 6.8e-114 415.2 471 56.1
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 4.8e-112 409.1 466 53.9
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 7.0e-111 405.2 446 56.7
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 7.2e-108 395.2 486 50.4
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 6.1e-107 392.1 471 52.4
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 8.0e-107 391.7 490 52.4
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 5.7e-105 385.6 486 51.0
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 1.3e-104 384.4 454 54.0
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 4.0e-98 362.8 414 53.6
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 1.2e-97 361.3 492 47.8
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.2e-97 361.3 367 57.5
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 7.5e-97 358.6 410 51.5
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 2.4e-95 353.6 484 45.9
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 5.6e-92 342.4 484 46.5
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 6.4e-88 328.9 380 54.7
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 3.6e-83 313.2 471 44.8
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 4.9e-80 302.8 445 46.7
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 7.1e-63 245.7 299 51.2
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 5.3e-58 229.6 429 40.3
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 9.0e-58 228.8 218 59.6
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 2.9e-56 223.8 511 34.2
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 1.9e-52 211.1 287 48.1
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 5.3e-50 203.0 296 48.6
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 2.6e-49 200.7 322 41.9
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 5.8e-49 199.5 325 37.8
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 1.1e-47 195.3 471 34.6
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 4.6e-46 189.9 125 76.8
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 1.9e-44 184.5 398 35.7
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 1.1e-42 178.7 224 52.7
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 1.5e-41 174.9 200 57.5
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 1.4e-39 168.3 118 72.0
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 4.2e-39 166.8 112 75.9
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 2.1e-38 164.5 118 69.5
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 3.5e-38 163.7 193 51.3
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 3.9e-37 160.2 111 74.8
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 9.7e-36 155.6 112 74.1
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 6.3e-35 152.9 113 71.7
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 2.5e-31 141.0 141 62.4
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 1.4e-29 135.2 89 75.3
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 3.0e-29 134.0 284 39.1
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 3.9e-29 133.7 93 76.3
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 5.1e-29 133.3 141 59.6
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 5.1e-29 133.3 140 60.7
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 1.3e-27 128.6 90 72.2
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 6.3e-27 126.3 224 36.6
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.2e-24 117.9 112 51.8
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 5.1e-21 106.7 191 37.7
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 1.1e-20 105.5 78 73.1
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 3.7e-19 100.5 346 28.3
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 1.2e-09 68.9 48 75.0
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 2.0e-09 68.2 138 39.9
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 1.7e-08 65.1 45 66.7
Dinv21951 Davidia involucrata HOM05D004921 ORTHO05D006008 1.9e-07 61.6 110 35.5
MBI14_g34262_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 1.9e-07 61.6 52 59.6
MBI14_g14180_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 5.5e-07 60.1 45 60.0
Cfa026870 Carpinus fangiana HOM05D004921 ORTHO05D006008 2.7e-06 57.8 356 26.1
BraA01t00065Z Brassica rapa HOM05D004921 ORTHO05D006008 8.0e-06 56.2 76 48.7


User provided reference genes

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