Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 6445.5 3249 100.0
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 5081.9 3255 80.4
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 4489.1 3259 71.8
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 4479.1 3281 71.1
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 4432.5 3272 70.6
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 4422.8 3257 70.2
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 4421.3 3258 70.8
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 4408.6 3257 70.2
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 4394.0 3257 69.9
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 4382.4 3260 69.7
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 4376.6 3257 69.8
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 4357.0 3263 69.2
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 4335.4 3251 69.9
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 4301.5 3261 68.9
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 4276.1 3266 67.9
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 4274.5 3276 67.8
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 4269.5 3263 67.9
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 4268.0 3263 68.1
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 4266.8 3281 68.6
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 4266.5 3313 67.8
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 4205.6 3285 68.2
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 4172.5 3262 67.2
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 4166.7 3261 67.5
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 4112.8 3262 66.3
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 4070.4 3273 65.8
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 4044.2 3260 65.7
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 4036.9 3267 65.1
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 4008.0 3272 65.3
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 4003.0 3273 65.0
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 4003.0 3273 65.0
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3991.0 3276 64.9
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3990.3 3265 65.0
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3964.8 3266 63.8
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3957.9 3382 63.2
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3952.1 3264 64.1
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3942.5 3255 64.5
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3922.5 3293 63.6
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3922.1 3260 63.9
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3914.0 3270 63.3
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3904.0 3265 63.4
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3869.7 3268 64.1
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3845.8 2886 69.5
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3841.2 3275 62.5
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3734.1 3319 61.2
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3733.0 3287 61.1
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3712.2 3295 60.5
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3681.0 3298 60.3
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3642.8 3255 60.1
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3629.7 3265 60.2
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3626.3 3257 59.8
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3617.4 3259 59.3
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3616.2 3261 59.6
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 3577.3 3022 62.7
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3576.6 3261 58.6
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3574.6 3257 59.0
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3568.5 3261 58.4
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3562.3 3320 58.6
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3550.0 3258 58.3
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3546.5 3260 58.3
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3537.3 3268 59.2
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3524.2 3268 59.2
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3508.8 3288 57.9
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 3501.1 3259 58.2
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3495.3 3266 58.4
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3488.0 3155 59.3
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3484.1 3287 58.1
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3433.7 3292 57.3
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3409.4 3285 56.5
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3399.4 3262 57.9
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 3367.0 3265 57.6
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3345.4 3296 55.7
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 3311.5 2019 83.6
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 3180.6 2719 62.0
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 3159.0 2434 67.5
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 3154.0 3118 56.2
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 3015.7 3021 55.5
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2857.0 3152 51.7
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2760.3 3295 49.0
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2593.5 2459 56.9
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2470.7 1600 79.1
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2348.9 2580 52.0
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2281.1 1694 69.8
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2262.3 1985 60.6
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2204.5 3544 40.2
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2170.2 2433 50.2
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 2139.8 1799 64.8
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2131.7 2461 49.5
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 2115.9 2825 45.0
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2098.9 1507 72.1
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2073.1 1468 73.0
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 2054.3 1446 74.6
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 2015.7 3312 39.2
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1989.2 3304 38.7
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1914.0 3366 37.7
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1734.5 1004 88.1
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 1720.3 1498 62.7
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1615.5 969 84.1
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1533.1 1242 64.1
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1520.4 2183 43.0
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1498.4 1761 48.1
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1360.5 1537 50.1
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1290.0 1019 66.3
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1287.3 1558 49.0
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1209.1 843 72.7
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1188.7 1483 46.5
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1140.2 836 70.7
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1119.8 816 70.6
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1117.8 1136 57.4
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1105.9 944 62.4
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 7.1e-308 1062.4 886 62.3
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 6.2e-304 1049.3 852 63.4
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 3.1e-303 1047.0 3370 27.9
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 6.2e-288 996.1 752 67.8
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 6.0e-267 926.4 1326 43.4
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 7.7e-230 803.1 819 52.5
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 1.3e-205 722.6 411 89.5
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 4.7e-203 714.1 441 81.4
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 8.6e-197 693.3 872 46.7
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 1.8e-194 685.6 947 44.9
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 3.5e-174 618.2 465 71.0
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 5.1e-173 614.4 820 45.5
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.6e-147 529.6 611 48.8
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 2.0e-145 522.7 450 60.0
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 1.2e-142 513.5 819 39.3
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 7.2e-135 487.6 829 37.8
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 4.5e-129 468.4 573 49.0
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 5.9e-129 468.0 327 71.3
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 1.1e-124 453.8 577 48.0
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 9.1e-122 444.1 270 80.7
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 1.5e-119 436.8 907 34.3
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 5.5e-119 434.9 250 85.6
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 7.5e-116 424.5 342 65.5
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 2.2e-112 412.9 301 67.4
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 2.3e-104 386.3 669 37.1
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 3.6e-102 379.0 419 53.7
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 2.6e-100 372.9 459 44.4
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 3.5e-97 362.5 245 71.8
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 2.9e-96 359.4 217 85.3
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 5.0e-96 358.6 816 32.8
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.0e-93 350.9 307 60.6
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 4.4e-92 345.5 824 31.4
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 1.9e-90 340.1 244 67.6
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 1.1e-85 324.3 358 52.8
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.9e-79 303.5 968 29.0
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 3.6e-78 299.3 298 55.7
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 4.4e-76 292.4 326 50.6
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 1.1e-66 261.2 696 30.0
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 1.9e-63 250.4 155 80.0
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 9.6e-63 248.1 337 44.2
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 1.3e-54 221.1 220 54.5
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.2e-52 214.5 717 28.3
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 1.3e-51 211.1 403 36.0
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 4.5e-36 159.5 118 68.6
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 3.7e-30 139.8 82 84.1
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.7e-27 131.0 111 55.0
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 1.4e-26 127.9 96 69.8
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 1.2e-25 124.8 116 62.9
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 1.6e-25 124.4 112 60.7
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 4.6e-25 122.9 108 65.7
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.0e-24 121.7 120 60.8
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 2.5e-23 117.1 70 84.3
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 7.4e-23 115.5 109 56.0
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 8.2e-22 112.1 86 65.1
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.4e-18 101.3 93 49.5
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 6.3e-14 85.9 60 66.7
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 2.2e-11 77.4 56 75.0
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 9.4e-10 72.0 56 60.7
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 6.1e-09 69.3 54 59.3
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 8.0e-09 68.9 58 63.8
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 1.4e-08 68.2 45 75.6
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 1.8e-08 67.8 54 59.3
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 1.1e-07 65.1 98 43.9


User provided reference genes

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