Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 3.3e-107 391.7 198 100.0
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.3e-92 343.2 198 85.4
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 1.9e-91 339.3 199 87.9
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 1.3e-87 326.6 200 82.0
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.3e-87 326.6 200 82.0
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.7e-87 326.2 200 82.0
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 4.9e-87 324.7 200 83.5
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 6.4e-87 324.3 200 81.0
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 6.4e-87 324.3 200 81.5
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 1.9e-86 322.8 200 80.5
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 3.2e-86 322.0 201 84.1
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 4.2e-86 321.6 198 82.3
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 1.2e-85 320.1 198 79.8
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 2.7e-85 318.9 198 80.8
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 2.7e-85 318.9 199 81.4
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 1.0e-84 317.0 200 78.5
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 2.3e-84 315.8 199 83.9
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 5.1e-84 314.7 177 85.3
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.9e-83 312.8 199 80.4
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.9e-83 312.8 199 80.4
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 4.3e-83 311.6 199 81.9
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 7.3e-83 310.8 199 82.9
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 7.3e-83 310.8 201 79.1
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 7.3e-83 310.8 199 79.9
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 7.3e-83 310.8 198 79.8
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 9.6e-83 310.5 200 80.5
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 6.2e-82 307.8 198 80.3
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 6.2e-82 307.8 198 77.8
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 6.2e-82 307.8 199 78.9
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 1.1e-81 307.0 180 85.0
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 1.8e-81 306.2 194 79.9
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 1.8e-81 306.2 203 77.8
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 3.4e-80 302.0 206 77.2
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 4.4e-80 301.6 179 83.8
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 7.6e-80 300.8 203 75.4
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 1.3e-79 300.1 201 77.6
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 1.3e-79 300.1 201 78.6
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 1.7e-79 299.7 203 76.4
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 2.2e-79 299.3 203 75.9
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 4.9e-79 298.1 203 76.4
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 8.4e-79 297.4 199 77.9
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 8.4e-79 297.4 203 76.8
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 1.4e-78 296.6 198 75.3
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 2.4e-78 295.8 191 77.5
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 7.1e-78 294.3 180 79.4
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 9.3e-78 293.9 203 74.9
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 9.3e-78 293.9 202 74.8
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 1.6e-77 293.1 180 80.6
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 2.7e-77 292.4 199 74.9
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 2.7e-77 292.4 198 74.2
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 2.7e-77 292.4 198 75.8
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 2.7e-77 292.4 198 75.8
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 3.5e-77 292.0 198 76.3
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 7.9e-77 290.8 189 77.2
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 1.3e-76 290.0 201 77.1
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 3.0e-76 288.9 177 80.8
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 3.0e-76 288.9 177 80.8
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 3.0e-76 288.9 177 80.8
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 5.1e-76 288.1 180 78.9
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 2.5e-75 285.8 180 78.3
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 4.3e-75 285.0 169 82.2
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 7.3e-75 284.3 177 78.0
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 7.3e-75 284.3 203 71.4
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 9.6e-75 283.9 200 76.0
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 2.1e-74 282.7 193 75.1
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 9.0e-73 277.3 200 73.5
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.7e-71 273.1 199 74.9
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 2.2e-71 272.7 179 74.3
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 8.4e-71 270.8 192 70.3
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 1.9e-70 269.6 175 76.6
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 3.2e-70 268.9 199 72.9
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 1.2e-69 266.9 212 68.9
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 3.5e-69 265.4 198 70.7
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 6.7e-68 261.2 208 68.3
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 6.7e-68 261.2 211 67.8
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 8.7e-68 260.8 207 68.1
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 8.7e-68 260.8 208 68.3
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 8.7e-68 260.8 208 68.3
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 8.7e-68 260.8 208 68.3
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 1.5e-67 260.0 201 69.7
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 1.9e-67 259.6 184 73.4
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 1.9e-67 259.6 184 73.4
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 1.9e-67 259.6 177 70.1
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 2.5e-67 259.2 177 73.4
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 7.4e-67 257.7 205 68.3
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 1.6e-66 256.5 216 64.8
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 3.7e-66 255.4 210 66.7
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 1.4e-65 253.4 210 66.2
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 1.4e-65 253.4 210 66.2
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 2.4e-65 252.7 177 70.1
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 5.3e-65 251.5 186 67.2
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 5.3e-65 251.5 186 67.2
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 4.5e-64 248.4 153 80.4
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 6.5e-63 244.6 212 65.1
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 7.1e-62 241.1 180 66.1
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 1.1e-59 233.8 177 71.8
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 5.7e-59 231.5 171 70.2
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 1.5e-56 223.4 154 70.8
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 7.9e-53 211.1 199 61.8
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 2.6e-48 196.1 177 54.8
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 7.7e-48 194.5 143 70.6
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 1.4e-44 183.7 178 51.7
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 2.5e-43 179.5 175 51.4
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 1.8e-41 173.3 108 75.9
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 9.1e-41 171.0 176 49.4
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 3.4e-40 169.1 108 74.1
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 3.8e-39 165.6 180 50.6
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 7.9e-37 157.9 101 76.2
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 3.1e-33 146.0 178 48.9
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 1.2e-29 134.0 122 54.9
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 9.1e-25 117.9 131 49.6
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 6.8e-20 101.7 63 76.2
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 1.4e-12 77.4 48 77.1
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.4e-12 77.4 68 58.8
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 2.8e-10 69.7 60 65.0
Lj2g0024286 Lotus japonicus HOM05D006880 ORTHO05D236304 5.6e-06 55.5 66 51.5
Nn8g39713 Nelumbo nucifera HOM05D006880 ORTHO05D008638 7.3e-06 55.1 33 72.7


User provided reference genes

Program Settings