Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G115200 Carya illinoinensis HOM05D012218 ORTHO05D010844 0.0e+00 1805.0 967 100.0
QL10p005044 Quercus lobata HOM05D012473 ORTHO05D010844 1.1e-75 289.3 1038 32.5
QL02p071969 Quercus lobata HOM05D012473 ORTHO05D010844 4.6e-61 240.7 1028 31.6
Haze_16528 Corylus avellana HOM05D012473 ORTHO05D010844 8.6e-52 209.9 949 32.7
Cfa001988 Carpinus fangiana HOM05D012473 ORTHO05D010844 8.9e-49 199.9 984 29.9
Gohir.A05G382500 Gossypium hirsutum HOM05D012218 ORTHO05D010844 6.2e-42 177.2 971 26.7
Thecc.01G142200 Theobroma cacao HOM05D012218 ORTHO05D010844 3.4e-40 171.4 981 28.0
Gorai.012G037100 Gossypium raimondii HOM05D012218 ORTHO05D010844 4.6e-37 161.0 973 26.7
Dinv07458 Davidia involucrata HOM05D010873 ORTHO05D013124 1.9e-35 155.6 937 27.2
Actinidia06596 Actinidia chinensis HOM05D010873 ORTHO05D013124 1.2e-34 152.9 1057 27.0
TAR381G1694 Trochodendron aralioides HOM05D012218 ORTHO05D010844 5.8e-32 144.1 1043 26.1
FAN26G1572 Fragaria x ananassa HOM05D012473 ORTHO05D010844 2.2e-31 142.1 426 32.9
Gohir.D04G032700 Gossypium hirsutum HOM05D012218 ORTHO05D010844 7.1e-30 137.1 965 25.7
TPR.G28364 Trifolium pratense HOM05D012459 ORTHO05D010844 6.6e-28 130.6 987 25.7
FAN28G1165 Fragaria x ananassa HOM05D012473 ORTHO05D010844 8.7e-28 130.2 989 27.1
Psat0s4832g0040 Pisum sativum HOM05D012459 ORTHO05D010844 9.6e-27 126.7 457 32.6
Ca_25366_v3 Cicer arietinum L. HOM05D012459 ORTHO05D010844 4.8e-26 124.4 991 25.8
Potri.007G098300 Populus trichocarpa HOM05D012218 ORTHO05D017165 4.8e-26 124.4 977 28.1
MD15G1138700 Malus domestica HOM05D012473 ORTHO05D010844 3.1e-25 121.7 939 27.8
Lj2g0023112 Lotus japonicus HOM05D012459 ORTHO05D010844 1.2e-24 119.8 1015 26.8
FAN23G1528 Fragaria x ananassa HOM05D012473 ORTHO05D010844 1.5e-24 119.4 994 26.9
Glyma.16G211200 Glycine max HOM05D012459 ORTHO05D010844 7.6e-24 117.1 994 26.9
Duzib187G0544 Durio zibethinus HOM05D012218 ORTHO05D010844 2.9e-23 115.2 412 34.0
Medtr6g078430 Medicago truncatula HOM05D012459 ORTHO05D010844 6.4e-23 114.0 949 25.6
Nn3g21159 Nelumbo nucifera HOM05D012218 ORTHO05D019306 1.4e-22 112.8 1023 24.4
Sabra07G0081700 Salix brachista HOM05D012218 ORTHO05D017165 9.3e-22 110.2 991 27.1
FAN19G1264 Fragaria x ananassa HOM05D012473 ORTHO05D010844 4.6e-21 107.8 1000 26.3
FvH4_5g34270 Fragaria vesca HOM05D012473 ORTHO05D010844 2.3e-20 105.5 361 31.9
Phvul.004G137400 Phaseolus vulgaris HOM05D012459 ORTHO05D010844 3.0e-20 105.1 980 23.4
Glyma.16G211400 Glycine max HOM05D000005 ORTHO05D010844 6.6e-20 104.0 417 33.8
FvH4_1g25520 Fragaria vesca HOM05D012473 ORTHO05D010844 3.3e-19 101.7 995 26.2
Lalb_Chr19g0134401 Lupinus albus HOM05D012459 ORTHO05D010844 9.6e-19 100.1 719 27.4
VMungo0464G0894 Vigna mungo HOM05D000005 ORTHO05D012186 5.3e-17 94.4 923 23.9
Sc09g0002200 Simmondsia chinensis HOM05D030946 ORTHO05D010844 2.6e-16 92.0 182 39.6
Cpa.g.sc37.40 Carica papaya HOM05D001512 ORTHO05D001574 3.8e-15 88.2 392 30.4
FAN08G2906 Fragaria x ananassa HOM05D012473 ORTHO05D010844 8.4e-15 87.0 162 41.4
Glyma.09G162200 Glycine max HOM05D012459 ORTHO05D010844 4.2e-14 84.7 403 30.8
Oeu028233.1 Olea europaea HOM05D010873 ORTHO05D013124 5.5e-14 84.3 1007 24.6
TWI31G0860 Tripterygium wilfordii HOM05D012218 ORTHO05D010844 7.1e-14 84.0 989 24.9
Aa31LG1G18120 Aethionema arabicum HOM05D009813 ORTHO05D011936 1.2e-13 83.2 161 37.9
ClCG01G004750 Citrullus lanatus HOM05D036858 ORTHO05D010844 1.6e-13 82.8 165 38.8
Rhsim10G0129700 Rhododendron simsii HOM05D017996 ORTHO05D017165 6.7e-12 77.4 403 30.0
AUR62003591 Chenopodium quinoa HOM05D030946 ORTHO05D010844 8.7e-12 77.0 120 37.5
Sed0024256 Sechium edule HOM05D036858 ORTHO05D010844 1.1e-11 76.6 396 28.5
AT5G63720 Arabidopsis thaliana HOM05D009813 ORTHO05D011936 1.9e-11 75.9 229 37.6
Lalb_Chr17g0336721 Lupinus albus HOM05D012459 ORTHO05D010844 2.5e-11 75.5 305 32.1
Manes.05G184500 Manihot esculenta HOM05D012218 ORTHO05D010844 2.5e-11 75.5 408 30.6
AL8G40940 Arabidopsis lyrata HOM05D009813 ORTHO05D011936 3.3e-11 75.1 205 35.6
vmacro12771 Vaccinium macrocarpon HOM05D017996 ORTHO05D017165 3.3e-11 75.1 196 36.7
arahy.Tifrunner.gnm1.ann1.9KKX2T Arachis hypogaea HOM05D012459 ORTHO05D010844 5.6e-11 74.3 337 31.5
arahy.Tifrunner.gnm1.ann1.UJV3YP Arachis hypogaea HOM05D012459 ORTHO05D010844 7.4e-11 73.9 386 29.5
AL8G40880 Arabidopsis lyrata HOM05D009813 ORTHO05D011936 9.6e-11 73.6 205 35.1
CSS0006956 Camellia sinensis var. sinensis HOM05D017996 ORTHO05D017165 9.6e-11 73.6 160 35.6
CSS0018747 Camellia sinensis var. sinensis HOM05D017996 ORTHO05D017165 9.6e-11 73.6 160 35.6
CSS0038628 Camellia sinensis var. sinensis HOM05D017996 ORTHO05D017165 1.3e-10 73.2 178 34.3
Solyc05g008490.2 Solanum lycopersicum HOM05D010873 ORTHO05D013124 8.1e-10 70.5 164 35.4
CSS0030355 Camellia sinensis var. sinensis HOM05D017996 ORTHO05D017165 1.1e-09 70.1 178 33.7
PGR102G2674 Punica granatum HOM05D012473 ORTHO05D010844 2.4e-09 68.9 283 30.4
EL10Ac4g09661 Beta vulgaris HOM05D030946 ORTHO05D010844 6.9e-09 67.4 421 27.3
ECA233G2412 Erigeron canadensis HOM05D037976 ORTHO05D035162 9.0e-09 67.0 155 31.0
AUR62000557 Chenopodium quinoa HOM05D030946 ORTHO05D010844 1.5e-08 66.2 79 46.8
THA.LOC104800245 Tarenaya hassleriana HOM05D009813 ORTHO05D011936 2.0e-08 65.9 380 29.7
BcaC04g23353 Brassica carinata HOM05D009813 ORTHO05D011936 1.3e-07 63.2 213 31.9
PGSC0003DMG400030562 Solanum tuberosum HOM05D010873 ORTHO05D013124 1.7e-07 62.8 966 24.6
Thhalv10029311m.g Eutrema salsugineum HOM05D009813 ORTHO05D011936 2.9e-07 62.0 207 32.9
BcaNung04641 Brassica carinata HOM05D009813 ORTHO05D011936 3.8e-07 61.6 173 32.9
MELO3C005461.2 Cucumis melo HOM05D036858 ORTHO05D010844 3.8e-07 61.6 401 27.9
A09p08400 Brassica napus HOM05D009813 ORTHO05D011936 6.5e-07 60.8 182 33.0
BraA09t36490Z Brassica rapa HOM05D009813 ORTHO05D011936 6.5e-07 60.8 182 33.0
Sopen05g004330 Solanum pennellii HOM05D010873 ORTHO05D013124 8.4e-07 60.5 977 21.8
Sp2g26820 Schrenkiella parvula HOM05D009813 ORTHO05D011936 1.1e-06 60.1 163 37.4
Nitab4.5_0000350g0130 Nicotiana tabacum HOM05D010873 ORTHO05D013124 1.4e-06 59.7 338 28.4
CANSAT35G0648 Cannabis sativa HOM05D012459 ORTHO05D010844 3.2e-06 58.5 182 39.6
CARHR098770 Cardamine hirsuta HOM05D009813 ORTHO05D011936 7.1e-06 57.4 161 33.5


User provided reference genes

Program Settings