Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 5.2e-72 274.2 136 100.0
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 9.9e-71 270.0 136 98.5
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.7e-70 269.2 136 97.1
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 2.9e-70 268.5 136 97.8
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 2.9e-70 268.5 136 97.8
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 3.7e-70 268.1 136 97.1
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 6.4e-70 267.3 136 97.1
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 1.4e-69 266.2 136 96.3
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.2e-69 265.0 136 95.6
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 3.2e-69 265.0 136 95.6
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 5.4e-69 264.2 136 94.1
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 7.1e-69 263.8 136 95.6
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 9.2e-69 263.5 136 94.1
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.2e-68 263.1 136 95.6
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.6e-68 262.7 136 94.9
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 2.1e-68 262.3 136 95.6
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 4.6e-68 261.2 136 93.4
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 4.6e-68 261.2 136 93.4
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 4.6e-68 261.2 136 93.4
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 6.0e-68 260.8 136 93.4
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 6.0e-68 260.8 136 93.4
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 6.0e-68 260.8 136 93.4
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 7.8e-68 260.4 136 93.4
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 1.0e-67 260.0 136 94.1
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 1.7e-67 259.2 136 93.4
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 2.3e-67 258.8 136 92.6
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 2.3e-67 258.8 136 92.6
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 2.3e-67 258.8 136 92.6
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 3.0e-67 258.5 136 92.6
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 3.0e-67 258.5 136 91.9
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 3.0e-67 258.5 136 94.1
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 3.9e-67 258.1 136 93.4
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 3.9e-67 258.1 136 92.6
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 6.6e-67 257.3 136 91.9
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 8.6e-67 256.9 136 94.1
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 8.6e-67 256.9 137 94.2
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 8.6e-67 256.9 136 91.9
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 8.6e-67 256.9 136 92.6
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 8.6e-67 256.9 136 92.6
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 1.5e-66 256.1 136 91.9
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 4.3e-66 254.6 136 91.2
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 7.3e-66 253.8 136 89.7
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 1.2e-65 253.1 137 92.7
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 1.6e-65 252.7 136 90.4
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 2.1e-65 252.3 136 91.2
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 2.1e-65 252.3 136 91.9
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 2.8e-65 251.9 136 89.7
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.7e-65 251.1 136 89.7
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 4.7e-65 251.1 138 91.3
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 4.7e-65 251.1 136 87.5
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.4e-64 249.6 138 90.6
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.4e-64 249.6 138 90.6
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 4.0e-64 248.1 136 89.7
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 4.0e-64 248.1 136 89.7
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 4.0e-64 248.1 136 86.8
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 8.9e-64 246.9 159 81.1
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 1.2e-63 246.5 149 83.2
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.2e-63 246.5 136 86.8
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 2.0e-63 245.7 136 88.2
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 2.2e-62 242.3 137 85.4
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 2.9e-62 241.9 137 86.9
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 4.9e-62 241.1 136 89.0
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 1.4e-61 239.6 136 83.8
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.9e-61 239.2 136 88.2
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 5.4e-61 237.7 153 79.7
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.2e-60 236.5 148 80.4
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 2.7e-60 235.3 172 70.9
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 7.8e-60 233.8 169 73.4
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 1.0e-59 233.4 136 86.8
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.3e-59 232.3 189 67.7
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 6.6e-59 230.7 139 82.7
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 2.5e-58 228.8 136 77.2
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 5.6e-58 227.6 136 76.5
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 7.3e-58 227.3 136 77.2
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 7.6e-55 217.2 120 91.7
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.3e-51 206.5 136 77.2
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.7e-51 206.1 106 94.3
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 3.3e-50 201.8 124 83.1
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.3e-49 199.9 110 85.5
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 4.8e-49 198.0 105 91.4
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 6.2e-49 197.6 136 77.2
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 3.1e-48 195.3 105 90.5
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 5.3e-48 194.5 136 76.5
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 1.2e-47 193.4 169 64.5
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.7e-46 189.5 136 75.0
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 9.3e-45 183.7 138 71.7
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 4.6e-44 181.4 107 84.1
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 1.1e-42 176.8 136 69.1
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 4.3e-42 174.9 156 61.5
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.5e-39 166.4 136 64.0
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 2.2e-38 162.5 136 64.7
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 5.5e-37 157.9 80 93.8
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 2.7e-36 155.6 142 49.3
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 7.9e-36 154.1 77 100.0
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 1.3e-35 153.3 81 95.1
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 2.3e-35 152.5 80 91.2
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 3.9e-35 151.8 77 97.4
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 5.1e-35 151.4 77 97.4
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 1.9e-34 149.4 82 87.8
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 1.9e-34 149.4 82 87.8
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 2.5e-34 149.1 86 86.0
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 2.5e-34 149.1 77 96.1
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 2.5e-34 149.1 77 96.1
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 7.4e-34 147.5 80 90.0
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 7.4e-34 147.5 80 90.0
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 7.4e-34 147.5 80 90.0
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 7.4e-34 147.5 77 93.5
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 7.4e-34 147.5 77 93.5
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 7.4e-34 147.5 77 93.5
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 7.4e-34 147.5 77 93.5
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 9.6e-34 147.1 77 93.5
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 9.6e-34 147.1 77 93.5
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 9.6e-34 147.1 77 93.5
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 9.6e-34 147.1 82 87.8
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.1e-33 146.0 77 92.2
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 2.1e-33 146.0 136 51.5
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 3.7e-33 145.2 77 90.9
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 4.8e-33 144.8 82 86.6
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.1e-32 143.7 77 90.9
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 2.4e-32 142.5 82 86.6
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 3.1e-32 142.1 77 90.9
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 4.0e-32 141.7 128 49.2
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 5.3e-32 141.4 77 89.6
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 2.0e-31 139.4 113 64.6
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 2.0e-31 139.4 156 48.1
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 2.6e-31 139.0 77 85.7
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.6e-31 139.0 77 88.3
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.6e-31 139.0 77 87.0
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 3.4e-31 138.7 77 88.3
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 4.5e-31 138.3 77 87.0
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 4.5e-31 138.3 77 88.3
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 7.6e-31 137.5 81 82.7
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 1.3e-30 136.7 76 88.2
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 1.7e-30 136.3 87 77.0
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 3.8e-30 135.2 75 89.3
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 2.1e-28 129.4 126 57.1
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 3.5e-28 128.6 74 82.4
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 8.7e-27 124.0 116 61.2
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.9e-26 122.9 60 95.0
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.9e-26 122.9 60 95.0
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 6.9e-24 114.4 56 96.4
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 6.9e-24 114.4 56 96.4
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 6.9e-24 114.4 56 96.4
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 1.5e-23 113.2 56 92.9
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 2.0e-23 112.8 56 92.9
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 2.6e-23 112.5 56 94.6
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 2.6e-23 112.5 56 94.6
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 3.4e-23 112.1 110 56.4
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 1.7e-22 109.8 56 92.9
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 2.2e-22 109.4 57 93.0
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 3.8e-22 108.6 56 94.6
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 7.2e-21 104.4 59 84.7
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 2.7e-20 102.4 75 58.7
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 1.9e-18 96.3 50 92.0
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 1.0e-14 84.0 45 86.7
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 1.7e-14 83.2 44 86.4
Haze_26443 Corylus avellana HOM05D000849 ORTHO05D005360 1.8e-11 73.2 126 34.1
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 2.2e-09 66.2 135 28.1
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 4.8e-09 65.1 41 78.0
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 1.1e-08 63.9 138 27.5
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 7.0e-08 61.2 29 100.0
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 3.4e-07 58.9 138 28.3
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.3e-06 57.0 138 24.6
Cpa.g.c40005 Carica papaya HOM05D004554 ORTHO05D005360 2.2e-06 56.2 25 96.0


User provided reference genes

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