Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 2.4e-293 1011.5 523 100.0
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.7e-230 802.7 537 79.1
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 8.1e-209 730.7 537 73.9
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 8.1e-201 704.1 518 74.3
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.3e-179 633.6 537 64.6
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 2.3e-179 632.9 535 62.4
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 2.2e-177 626.3 536 62.9
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 1.8e-176 623.2 537 62.6
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 9.0e-176 620.9 561 62.0
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 8.5e-174 614.4 533 62.5
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 2.6e-167 592.8 535 62.4
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 4.5e-167 592.0 535 62.4
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 1.0e-166 590.9 536 60.6
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 1.7e-166 590.1 537 60.1
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 8.5e-166 587.8 535 60.9
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 7.2e-165 584.7 535 60.7
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 9.4e-165 584.3 536 58.4
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 2.7e-164 582.8 536 59.1
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 4.7e-164 582.0 535 60.6
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 4.1e-160 568.9 519 58.4
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 6.9e-160 568.2 677 52.4
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 1.2e-156 557.4 508 58.9
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 8.0e-156 554.7 538 57.6
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 2.3e-155 553.1 547 57.2
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 3.0e-155 552.7 521 58.2
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 1.1e-154 550.8 538 57.8
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 2.2e-153 546.6 562 54.8
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 4.5e-151 538.9 523 57.2
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 2.9e-150 536.2 536 55.6
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 2.9e-150 536.2 539 57.3
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 2.9e-150 536.2 536 56.5
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 1.9e-149 533.5 538 56.5
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 1.9e-149 533.5 534 55.2
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 5.5e-149 531.9 539 56.0
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 2.3e-147 526.6 536 56.5
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 5.2e-147 525.4 542 53.0
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 8.8e-147 524.6 535 53.8
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 2.2e-145 520.0 609 50.2
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 3.7e-145 519.2 553 52.4
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 4.8e-145 518.8 536 53.2
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 9.1e-144 514.6 526 53.8
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 4.5e-143 512.3 521 54.1
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.0e-142 511.1 536 54.7
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 8.5e-142 508.1 533 53.3
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 8.5e-142 508.1 522 54.6
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.5e-141 507.3 527 52.9
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.5e-141 506.5 528 53.2
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.2e-141 505.8 528 53.2
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 9.4e-141 504.6 537 54.0
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.2e-140 504.2 529 52.4
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 2.1e-140 503.4 519 52.0
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 1.8e-139 500.4 539 53.4
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 1.8e-139 500.4 521 54.3
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.0e-139 499.6 547 51.7
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 2.2e-137 493.4 525 53.3
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 4.8e-137 492.3 521 52.0
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 6.3e-137 491.9 509 55.8
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 8.3e-137 491.5 521 52.0
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.2e-135 487.6 525 51.8
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 4.5e-135 485.7 539 51.6
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 1.7e-134 483.8 538 52.2
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 1.5e-133 480.7 562 51.6
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 1.2e-132 477.6 540 50.2
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 5.2e-131 472.2 526 51.9
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 6.8e-131 471.9 524 52.1
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 3.4e-130 469.5 541 52.3
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 4.4e-130 469.2 523 49.9
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 7.5e-130 468.4 521 51.2
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 1.3e-129 467.6 447 58.4
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 2.8e-129 466.5 525 51.6
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 5.4e-128 462.2 513 50.3
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 5.4e-128 462.2 513 50.3
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 7.0e-128 461.8 522 50.8
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 1.0e-126 458.0 540 49.4
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 1.0e-126 458.0 521 49.9
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 5.0e-126 455.7 515 50.7
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 1.5e-125 454.1 529 50.5
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 4.3e-125 452.6 529 48.2
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 2.3e-123 446.8 528 47.7
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 5.2e-123 445.7 528 47.2
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 5.2e-123 445.7 537 48.0
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 2.6e-122 443.4 517 47.6
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 7.5e-122 441.8 529 47.8
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 9.8e-122 441.4 528 47.0
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 6.4e-121 438.7 559 47.2
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 4.1e-120 436.0 529 47.4
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 4.1e-120 436.0 529 47.4
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 9.2e-120 434.9 529 47.3
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 2.0e-119 433.7 529 46.5
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 6.6e-118 428.7 542 46.7
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 7.3e-117 425.2 529 45.9
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 7.3e-117 425.2 523 45.1
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 9.5e-117 424.9 448 54.5
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 6.2e-116 422.2 529 46.1
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 1.1e-115 421.4 529 45.9
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.1e-115 421.4 529 46.9
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 1.8e-115 420.6 490 50.4
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 2.6e-114 416.8 520 46.5
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 5.8e-114 415.6 422 55.9
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 8.3e-113 411.8 530 45.8
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 1.4e-112 411.0 526 45.4
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 7.8e-111 405.2 522 46.4
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 2.3e-110 403.7 280 77.1
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 1.5e-109 401.0 380 56.3
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 2.6e-106 390.2 380 55.5
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 9.2e-104 381.7 558 43.5
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 2.7e-103 380.2 520 43.3
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 2.7e-103 380.2 523 43.4
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 7.8e-103 378.6 522 44.1
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 2.5e-101 373.6 528 44.3
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 8.4e-97 358.6 458 47.2
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 2.7e-95 353.6 405 52.1
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 6.0e-95 352.4 331 56.5
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 5.6e-93 345.9 550 39.6
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 1.8e-91 340.9 546 38.3
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 5.8e-90 335.9 341 54.0
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 3.8e-89 333.2 556 38.7
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 2.5e-85 320.5 559 39.0
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 1.5e-82 311.2 277 60.6
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 2.2e-81 307.4 523 39.0
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 1.1e-80 305.1 524 40.1
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.9e-80 304.3 359 50.1
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 7.9e-71 272.3 219 63.5
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 1.3e-70 271.6 259 60.2
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 1.8e-62 244.6 257 51.4
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 4.8e-60 236.5 430 37.4
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 6.3e-60 236.1 488 36.5
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 1.8e-59 234.6 489 34.4
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 5.3e-51 206.5 300 42.3
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 4.2e-40 170.2 347 35.7
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 3.7e-36 157.1 153 49.7
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 4.8e-36 156.8 153 50.3
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 1.4e-35 155.2 213 42.7
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 4.1e-35 153.7 174 48.3
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 2.0e-34 151.4 160 50.0
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 7.7e-34 149.4 148 49.3
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 7.2e-32 142.9 154 51.3
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 6.1e-31 139.8 136 53.7
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 4.0e-30 137.1 648 24.4
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 4.5e-26 123.6 534 25.7
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 2.2e-25 121.3 193 43.0
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 3.2e-24 117.5 189 36.5
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 9.4e-24 115.9 250 34.0
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 3.6e-23 114.0 177 37.9
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 3.8e-17 94.0 285 29.8
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 4.4e-13 80.5 124 38.7
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 1.2e-07 62.4 97 36.1
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 1.6e-07 62.0 229 27.9
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 4.0e-06 57.4 90 44.4


User provided reference genes

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