Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G094100 Carya illinoinensis HOM05D005186 ORTHO05D006278 2.6e-204 715.3 401 100.0
Haze_13870 Corylus avellana HOM05D005186 ORTHO05D006278 5.1e-107 392.1 337 73.0
CiPaw.04G060200 Carya illinoinensis HOM05D005186 ORTHO05D006278 3.5e-100 369.4 332 72.3
Thecc.03G156500 Theobroma cacao HOM05D005186 ORTHO05D006278 1.2e-92 344.4 333 67.9
Atru.chr1.716 Acer truncatum HOM05D005186 ORTHO05D006278 3.9e-91 339.3 331 62.2
Duzib205G1009 Durio zibethinus HOM05D005186 ORTHO05D006278 1.5e-90 337.4 334 66.5
TWI39G1272 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 5.3e-88 328.9 343 59.8
TAR374G0329 Trochodendron aralioides HOM05D005186 ORTHO05D006278 1.5e-87 327.4 346 62.7
Manes.14G035500 Manihot esculenta HOM05D005186 ORTHO05D006278 2.0e-87 327.0 336 62.5
Dinv28566 Davidia involucrata HOM05D005186 ORTHO05D006278 3.4e-87 326.2 345 64.6
TWI23G1038 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 1.3e-86 324.3 338 62.1
Gohir.D03G107500 Gossypium hirsutum HOM05D005186 ORTHO05D006278 9.3e-85 318.2 335 65.4
Gorai.003G113800 Gossypium raimondii HOM05D005186 ORTHO05D006278 4.6e-84 315.8 335 65.1
CANSAT56G0052 Cannabis sativa HOM05D005186 ORTHO05D006278 6.0e-84 315.5 337 60.5
Cpa.g.sc3.315 Carica papaya HOM05D005186 ORTHO05D006278 1.8e-83 313.9 343 62.1
Manes.06G135200 Manihot esculenta HOM05D005186 ORTHO05D006278 3.9e-83 312.8 334 63.8
Ciclev10005111m.g Citrus clementina HOM05D005186 ORTHO05D006278 6.7e-83 312.0 337 63.5
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 2.5e-82 310.1 353 64.0
Gohir.A03G058600 Gossypium hirsutum HOM05D005186 ORTHO05D006278 7.4e-82 308.5 335 64.2
Prupe.2G277700 Prunus persica HOM05D005186 ORTHO05D006278 2.9e-78 296.6 340 65.9
Potri.012G126000 Populus trichocarpa HOM05D005186 ORTHO05D006278 4.9e-78 295.8 339 60.8
Dinv22950 Davidia involucrata HOM05D005186 ORTHO05D006278 2.5e-77 293.5 310 65.2
Sabra15G0140200 Salix brachista HOM05D005186 ORTHO05D006278 1.6e-76 290.8 340 59.1
COL.COLO4_14129 Corchorus olitorius HOM05D005186 ORTHO05D006278 2.7e-76 290.0 330 57.0
Nn1g01074 Nelumbo nucifera HOM05D005186 ORTHO05D006278 1.3e-75 287.7 352 58.0
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 1.8e-75 287.3 379 57.0
Hma1.2p1_0432F.1_g151690 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 3.9e-75 286.2 352 61.4
vmacro06793 Vaccinium macrocarpon HOM05D005186 ORTHO05D006278 4.3e-74 282.7 349 53.0
Potri.015G126800 Populus trichocarpa HOM05D005186 ORTHO05D006278 5.7e-74 282.3 343 61.8
Sabra12G0094900 Salix brachista HOM05D005186 ORTHO05D006278 2.8e-73 280.0 338 60.4
RhsimUnG0046700 Rhododendron simsii HOM05D005186 ORTHO05D006278 6.3e-73 278.9 355 57.5
PGR042G0730 Punica granatum HOM05D005186 ORTHO05D006278 1.1e-72 278.1 343 55.7
Eucgr.A02891 Eucalyptus grandis HOM05D005186 ORTHO05D006278 3.1e-72 276.6 360 57.8
Nn6g34030 Nelumbo nucifera HOM05D005186 ORTHO05D006278 9.0e-72 275.0 351 57.0
Hma1.2p1_1640F.1_g295100 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 1.5e-71 274.2 342 57.3
Lj8A42G21 Lonicera japonica HOM05D005186 ORTHO05D006278 3.4e-71 273.1 354 56.2
Oeu022491.2 Olea europaea HOM05D005186 ORTHO05D006278 3.4e-71 273.1 352 57.7
RcHm_v2.0_Chr1g0374461 Rosa chinensis HOM05D005186 ORTHO05D006278 2.9e-70 270.0 343 60.6
CsaV3_7G006320 Cucumis sativus L. HOM05D005186 ORTHO05D006278 3.8e-70 269.6 342 50.6
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 6.5e-70 268.9 337 60.2
CSS0020740 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 1.9e-69 267.3 343 58.6
Nitab4.5_0001383g0010 Nicotiana tabacum HOM05D005186 ORTHO05D006278 4.2e-69 266.2 344 54.4
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 5.5e-69 265.8 335 59.7
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 7.2e-69 265.4 336 59.5
PGR142G0385 Punica granatum HOM05D005186 ORTHO05D006278 7.2e-69 265.4 361 54.6
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 9.3e-69 265.0 336 58.9
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.6e-68 264.2 335 59.4
Oeu042561.2 Olea europaea HOM05D005186 ORTHO05D006278 7.9e-68 261.9 348 55.2
CAN.G48.15 Capsicum annuum HOM05D005186 ORTHO05D006278 1.8e-67 260.8 346 55.2
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.8e-67 260.8 337 58.8
MELO3C018660.2 Cucumis melo HOM05D005186 ORTHO05D006278 5.1e-67 259.2 341 52.8
ClCG09G015150 Citrullus lanatus HOM05D005186 ORTHO05D006278 8.7e-67 258.5 338 50.6
Cc02_g04200 Coffea canephora HOM05D005186 ORTHO05D006278 1.5e-66 257.7 357 55.2
Aqoxy7G00728 Aquilegia oxysepala HOM05D005186 ORTHO05D006278 7.4e-66 255.4 344 52.3
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 4.5e-63 246.1 343 53.6
PSO170G0780 Papaver somniferum HOM05D005186 ORTHO05D006278 1.0e-62 245.0 351 51.9
Solyc03g083970.3 Solanum lycopersicum HOM05D005186 ORTHO05D006278 1.3e-62 244.6 342 54.1
Sopen03g023730 Solanum pennellii HOM05D005186 ORTHO05D006278 3.8e-62 243.0 340 54.1
MBI04_g37589_MAGBIO Magnolia biondii HOM05D005186 ORTHO05D006278 5.0e-62 242.7 352 51.1
PGSC0003DMG400013858 Solanum tuberosum HOM05D005186 ORTHO05D006278 6.5e-62 242.3 345 54.5
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 1.1e-61 241.5 353 51.6
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 2.5e-61 240.4 346 50.6
SGA_v2.0_scaffold543G52822 Striga asiatica HOM05D005186 ORTHO05D006278 1.6e-60 237.7 347 49.3
Nitab4.5_0003875g0030 Nicotiana tabacum HOM05D005186 ORTHO05D006278 4.6e-60 236.1 342 52.9
TAR375G0993 Trochodendron aralioides HOM05D005186 ORTHO05D006278 4.6e-60 236.1 269 62.8
PSO017G1100 Papaver somniferum HOM05D005186 ORTHO05D006278 6.1e-60 235.7 351 52.7
Sc13g0007880 Simmondsia chinensis HOM05D005186 ORTHO05D006278 1.0e-59 235.0 292 56.2
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 2.3e-59 233.8 365 49.9
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 3.3e-58 229.9 360 49.7
Sed0012571 Sechium edule HOM05D005186 ORTHO05D006278 9.7e-58 228.4 337 53.1
MSTRG.128 Avicennia marina HOM05D005186 ORTHO05D006278 8.2e-57 225.3 351 50.4
Hund11823 Selenicereus undatus HOM05D005186 ORTHO05D006278 1.8e-56 224.2 359 53.2
HanXRQChr14g0461411 Helianthus annuus HOM05D005186 ORTHO05D006278 3.1e-56 223.4 341 51.3
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 9.1e-56 221.9 363 51.5
Peaxi162Scf00241g00318 Petunia axillaris HOM05D005186 ORTHO05D006278 9.1e-56 221.9 352 51.4
CDE02G0091 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 3.4e-55 219.9 346 47.1
Lsat_1_v5_gn_2_129120 Lactuca sativa HOM05D005186 ORTHO05D006278 4.5e-55 219.5 346 53.2
SGA_v2.0_scaffold2G01194 Striga asiatica HOM05D005186 ORTHO05D006278 4.5e-55 219.5 349 53.0
Sed0005126 Sechium edule HOM05D005186 ORTHO05D006278 7.7e-55 218.8 339 45.7
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 1.0e-54 218.4 371 50.4
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 6.5e-54 215.7 370 50.3
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 1.1e-53 214.9 356 49.4
unitig_1.g29355 Utricularia gibba HOM05D005186 ORTHO05D006278 1.8e-51 207.6 331 47.1
unitig_747.g22057 Utricularia gibba HOM05D005186 ORTHO05D006278 1.8e-51 207.6 331 47.1
Ah.07g207900 Amaranthus hybridus HOM05D005186 ORTHO05D006278 3.9e-51 206.5 318 50.6
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 3.9e-51 206.5 375 44.5
BcaC01g02463 Brassica carinata HOM05D005186 ORTHO05D006278 1.1e-50 204.9 375 44.3
EL10Ac3g05838 Beta vulgaris HOM05D005186 ORTHO05D006278 9.7e-50 201.8 337 52.2
SalBow2G2587 Salvia bowleyana HOM05D005186 ORTHO05D006278 1.3e-49 201.4 337 46.0
DCAR_020192 Daucus carota HOM05D005186 ORTHO05D006278 2.2e-49 200.7 335 49.0
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 6.3e-49 199.1 346 50.0
Thecc.01G380900 Theobroma cacao HOM05D005186 ORTHO05D006278 8.2e-49 198.7 364 42.3
THA.LOC104821410 Tarenaya hassleriana HOM05D005186 ORTHO05D006278 9.1e-48 195.3 403 42.7
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 1.2e-47 194.9 346 48.3
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 5.9e-47 192.6 381 43.8
AL8G39220 Arabidopsis lyrata HOM05D005186 ORTHO05D006278 1.0e-46 191.8 392 43.6
Thhalv10004201m.g Eutrema salsugineum HOM05D005186 ORTHO05D006278 1.3e-46 191.4 397 42.1
Sp2g25560 Schrenkiella parvula HOM05D005186 ORTHO05D006278 4.2e-45 186.4 409 41.6
Lalb_Chr01g0000291 Lupinus albus HOM05D005186 ORTHO05D006278 1.6e-44 184.5 239 52.7
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 2.1e-44 184.1 294 50.0
AT5G62390 Arabidopsis thaliana HOM05D005186 ORTHO05D006278 6.1e-44 182.6 391 41.9
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 1.0e-43 181.8 405 41.0
GSVIVG01018630001 Vitis vinifera HOM05D005186 ORTHO05D006278 4.0e-43 179.9 181 64.1
Hund04601 Selenicereus undatus HOM05D005186 ORTHO05D006278 2.8e-41 173.7 347 40.9
COL.COLO4_12507 Corchorus olitorius HOM05D005186 ORTHO05D006278 3.1e-40 170.2 315 41.6
Aa31LG11G1230 Aethionema arabicum HOM05D005186 ORTHO05D006278 7.0e-40 169.1 383 41.5
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 4.5e-39 166.4 121 73.6
CDE11G1075 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 1.3e-38 164.9 345 43.8
CARHR276170 Cardamine hirsuta HOM05D005186 ORTHO05D006278 5.0e-38 162.9 390 42.1
AUR62015515 Chenopodium quinoa HOM05D005186 ORTHO05D006278 7.2e-37 159.1 121 72.7
AUR62002195 Chenopodium quinoa HOM05D005186 ORTHO05D006278 2.1e-36 157.5 121 72.7
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 6.1e-36 156.0 405 37.0
HPP92_022436 Vanilla planifolia HOM05D005186 ORTHO05D006278 6.1e-36 156.0 321 39.9
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 1.8e-35 154.5 412 37.4
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 1.8e-35 154.5 403 38.5
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 5.7e-34 149.4 404 37.4
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 2.8e-33 147.1 100 79.0
Migut.F01178 Erythranthe guttata HOM05D005186 ORTHO05D006278 1.4e-32 144.8 104 76.0
ATR1153G063 Amborella trichopoda HOM05D005186 ORTHO05D006278 1.2e-31 141.7 367 41.4
Zm00001eb379410 Zea mays HOM05D005186 ORTHO05D006278 2.3e-30 137.5 231 42.4
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 3.8e-30 136.7 105 67.6
SHI13968 Sapria himalayana HOM05D005186 ORTHO05D006278 3.8e-30 136.7 342 33.0
Zm00001eb229450 Zea mays HOM05D005186 ORTHO05D006278 2.0e-26 124.4 121 59.5
Os06g0104400 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 4.4e-26 123.2 110 65.5
Os02g0105500 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 6.3e-25 119.4 221 38.9
HanXRQChr05g0146091 Helianthus annuus HOM05D005186 ORTHO05D006278 9.2e-24 115.5 107 62.6
COL.COLO4_07114 Corchorus olitorius HOM05D005186 ORTHO05D006278 4.5e-23 113.2 80 77.5
BcaC01g02462 Brassica carinata HOM05D005186 ORTHO05D006278 9.5e-21 105.5 79 69.6
GSVIVG01000691001 Vitis vinifera HOM05D005186 ORTHO05D006278 5.2e-19 99.8 85 68.2
CAN.G319.13 Capsicum annuum HOM05D005186 ORTHO05D006278 6.8e-19 99.4 77 67.5
GSVIVG01000692001 Vitis vinifera HOM05D005186 ORTHO05D006278 1.5e-18 98.2 85 68.2
Atru.chr5.265 Acer truncatum HOM05D005186 ORTHO05D006278 3.5e-15 87.0 62 71.0
Ca_25004_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 5.6e-13 79.7 275 34.2
A06p29100 Brassica napus HOM05D005186 ORTHO05D006278 9.5e-13 79.0 132 40.2
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 8.0e-12 75.9 83 45.8
RcHm_v2.0_Chr1g0335331 Rosa chinensis HOM05D005186 ORTHO05D006278 3.1e-11 73.9 62 67.7
CAN.G1067.7 Capsicum annuum HOM05D005186 ORTHO05D006278 2.0e-10 71.2 62 62.9
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 3.9e-06 57.0 120 31.7


User provided reference genes

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