Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 1.9e-98 362.5 177 100.0
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 1.9e-82 309.3 176 85.2
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 2.4e-77 292.4 171 82.5
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 2.5e-74 282.3 151 88.7
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 1.2e-73 280.0 174 75.9
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 6.1e-73 277.7 165 80.0
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 6.1e-73 277.7 174 74.7
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 2.3e-72 275.8 171 77.2
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 5.2e-72 274.6 162 79.6
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 5.2e-72 274.6 181 74.0
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 6.8e-72 274.2 154 81.8
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 1.2e-71 273.5 166 77.7
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 2.0e-71 272.7 166 78.3
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 5.8e-71 271.2 159 81.1
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 7.5e-71 270.8 153 81.7
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 1.7e-70 269.6 159 80.5
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 2.2e-70 269.2 166 76.5
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 4.9e-70 268.1 162 77.2
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 6.4e-70 267.7 168 73.8
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 6.4e-70 267.7 168 76.8
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 8.3e-70 267.3 151 79.5
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 1.4e-69 266.5 170 75.3
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 1.9e-69 266.2 171 72.5
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 1.9e-69 266.2 165 77.0
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 2.4e-69 265.8 172 72.1
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 2.4e-69 265.8 168 73.8
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 3.2e-69 265.4 171 71.9
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 3.2e-69 265.4 165 75.2
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 5.4e-69 264.6 167 73.7
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 5.4e-69 264.6 173 72.3
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 5.4e-69 264.6 155 79.4
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 7.0e-69 264.2 169 73.4
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 1.2e-68 263.5 166 74.1
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 1.2e-68 263.5 166 76.5
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 1.6e-68 263.1 169 74.0
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 1.6e-68 263.1 169 74.0
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 1.6e-68 263.1 166 74.7
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 1.6e-68 263.1 158 79.1
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 1.6e-68 263.1 160 75.6
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 2.0e-68 262.7 169 72.8
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 2.0e-68 262.7 153 79.1
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 2.0e-68 262.7 171 73.7
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 2.7e-68 262.3 167 73.1
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 6.0e-68 261.2 164 72.6
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 7.8e-68 260.8 160 77.5
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 2.3e-67 259.2 170 72.9
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 3.0e-67 258.8 164 73.2
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 3.9e-67 258.5 158 77.2
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 5.0e-67 258.1 165 73.3
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 8.6e-67 257.3 155 74.8
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 1.5e-66 256.5 170 70.0
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 1.9e-66 256.1 167 72.5
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 1.9e-66 256.1 173 73.4
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 5.6e-66 254.6 175 69.7
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 5.6e-66 254.6 166 74.7
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 5.6e-66 254.6 166 74.7
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 9.5e-66 253.8 158 75.3
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 2.8e-65 252.3 169 73.4
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 6.2e-65 251.1 166 71.1
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.4e-64 250.0 166 73.5
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.3e-64 249.2 166 74.1
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 3.1e-64 248.8 166 74.1
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 3.1e-64 248.8 169 71.0
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 4.0e-64 248.4 163 71.2
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 1.2e-63 246.9 160 73.1
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 2.0e-63 246.1 224 57.1
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 5.8e-63 244.6 152 73.7
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 7.5e-63 244.2 163 69.9
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 9.8e-63 243.8 162 71.6
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 1.7e-62 243.0 159 72.3
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 4.9e-62 241.5 164 69.5
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 4.9e-62 241.5 170 70.6
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 6.4e-62 241.1 166 71.1
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 2.4e-61 239.2 160 68.1
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 3.2e-61 238.8 150 71.3
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 7.1e-61 237.7 150 70.7
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 1.6e-60 236.5 153 73.9
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 1.6e-60 236.5 152 73.7
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 2.7e-60 235.7 145 75.9
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 1.7e-59 233.0 152 72.4
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 2.3e-59 232.6 167 62.9
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 2.3e-59 232.6 181 66.3
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 5.1e-59 231.5 166 66.3
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 6.6e-59 231.1 158 67.7
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 2.5e-58 229.2 154 70.1
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 1.6e-57 226.5 171 64.3
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 8.1e-57 224.2 169 67.5
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 5.8e-55 218.0 166 65.1
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 1.7e-51 206.5 126 75.4
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 2.3e-51 206.1 129 73.6
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 1.1e-50 203.8 121 75.2
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 5.6e-50 201.4 153 58.2
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 8.1e-49 197.6 121 76.9
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 5.2e-48 194.9 132 68.2
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 2.6e-47 192.6 147 58.5
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 2.9e-46 189.1 168 56.5
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 1.1e-45 187.2 156 60.3
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 3.0e-43 179.1 151 62.3
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 2.4e-40 169.5 157 50.3
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 9.0e-40 167.5 154 55.8
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 2.6e-39 166.0 154 54.5
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 6.6e-35 151.4 98 67.3
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 8.1e-33 144.4 92 75.0
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-32 143.3 92 67.4
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 1.4e-29 133.7 121 57.0
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 2.1e-28 129.8 76 77.6
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 5.8e-23 111.7 68 77.9
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 6.1e-12 75.1 43 81.4
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 1.3e-11 73.9 50 66.0
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 3.3e-10 69.3 40 82.5
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 4.3e-10 68.9 80 47.5
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 3.7e-09 65.9 36 83.3
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 1.8e-08 63.5 36 69.4
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 4.1e-08 62.4 43 67.4
TPR.G26213 Trifolium pratense HOM05D006982 ORTHO05D008909 5.0e-06 55.5 47 55.3


User provided reference genes

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