Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 1.4e-147 526.2 249 100.0
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 2.3e-118 429.1 250 80.4
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 4.0e-118 428.3 250 78.8
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 5.7e-117 424.5 249 80.3
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 2.8e-116 422.2 248 78.6
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 8.3e-116 420.6 250 79.6
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 1.4e-115 419.9 250 78.4
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 4.1e-115 418.3 250 79.2
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 4.1e-115 418.3 250 77.6
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 9.1e-115 417.2 250 76.4
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 2.7e-114 415.6 252 76.6
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 4.5e-114 414.8 252 76.2
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 1.0e-113 413.7 250 76.0
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 2.3e-113 412.5 250 76.8
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.9e-113 412.1 250 77.2
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 2.9e-113 412.1 250 77.2
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 3.8e-113 411.8 250 77.6
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 6.5e-113 411.0 250 76.4
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 6.5e-113 411.0 250 76.4
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 8.6e-113 410.6 250 76.8
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 2.5e-112 409.1 250 78.0
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 3.2e-112 408.7 250 76.0
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 2.1e-111 406.0 250 75.2
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 2.1e-111 406.0 250 76.4
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 2.8e-111 405.6 250 76.0
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 6.1e-111 404.4 250 76.0
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 5.2e-110 401.4 250 74.8
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 1.5e-109 399.8 250 74.8
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 2.0e-109 399.4 252 74.2
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 5.7e-109 397.9 250 75.2
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 7.5e-109 397.5 250 74.4
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 1.4e-107 393.3 252 73.4
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 1.8e-107 392.9 251 73.3
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 1.8e-107 392.9 250 74.4
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 1.8e-107 392.9 250 74.0
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 2.4e-107 392.5 252 73.0
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.4e-107 392.5 250 72.8
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 2.4e-107 392.5 251 73.3
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 5.4e-107 391.3 250 72.4
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 7.0e-107 391.0 250 73.2
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 9.2e-107 390.6 250 72.4
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 1.2e-106 390.2 251 72.5
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 1.2e-106 390.2 251 72.1
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 1.6e-106 389.8 252 72.6
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 1.7e-105 386.3 251 71.3
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 3.8e-105 385.2 252 70.2
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 5.0e-105 384.8 252 70.2
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 5.0e-105 384.8 250 73.6
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 5.0e-105 384.8 251 70.9
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 6.6e-105 384.4 252 72.2
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 8.6e-105 384.0 250 71.6
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 1.5e-104 383.3 249 69.1
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 1.5e-104 383.3 252 71.0
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 1.9e-104 382.9 254 71.7
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 2.5e-104 382.5 251 70.9
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 2.5e-104 382.5 251 70.5
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 9.5e-104 380.6 252 70.6
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 2.8e-103 379.0 250 70.4
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 2.8e-103 379.0 250 71.6
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 3.6e-103 378.6 250 68.8
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 1.0e-102 377.1 250 68.8
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 1.4e-102 376.7 249 67.9
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 1.8e-102 376.3 251 69.7
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 3.0e-102 375.6 250 68.8
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 9.8e-101 370.5 250 69.6
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 6.4e-100 367.9 250 66.8
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 1.4e-99 366.7 244 69.3
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 2.4e-99 365.9 250 72.0
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 4.1e-99 365.2 250 70.8
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 7.8e-98 360.9 244 68.9
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 7.8e-98 360.9 250 66.8
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 7.8e-98 360.9 228 74.1
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 7.8e-98 360.9 250 68.0
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 1.3e-97 360.1 249 67.1
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 2.3e-97 359.4 262 66.4
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 8.6e-97 357.5 253 65.2
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 5.6e-96 354.8 252 64.7
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 1.2e-95 353.6 252 63.9
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 1.2e-95 353.6 252 63.9
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 1.2e-95 353.6 252 63.9
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 1.2e-95 353.6 252 63.9
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 4.7e-95 351.7 252 63.5
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 8.0e-95 350.9 250 64.4
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 1.4e-94 350.1 252 63.9
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 1.4e-94 350.1 252 65.1
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 5.2e-94 348.2 250 66.4
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 8.9e-94 347.4 250 64.0
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 2.0e-93 346.3 252 62.3
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 2.0e-93 346.3 252 62.3
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 4.4e-93 345.1 252 63.1
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 5.8e-93 344.7 251 62.9
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 2.9e-92 342.4 252 61.9
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 8.3e-92 340.9 251 64.1
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 1.0e-89 334.0 203 77.3
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 2.3e-89 332.8 250 61.6
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 1.9e-88 329.7 248 59.3
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 3.1e-86 322.4 240 59.6
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 4.0e-86 322.0 250 57.6
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 2.0e-85 319.7 238 63.4
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 9.5e-80 300.8 244 57.8
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 5.2e-78 295.0 246 55.7
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 7.1e-75 284.6 247 54.7
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 1.1e-72 277.3 247 55.1
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 3.3e-72 275.8 247 54.7
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 1.3e-68 263.8 249 49.8
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 3.8e-68 262.3 154 74.7
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 1.5e-61 240.4 253 45.8
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 2.0e-61 240.0 267 45.3
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 1.1e-59 234.2 286 47.6
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 1.8e-57 226.9 258 48.8
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 3.1e-54 216.1 142 75.4
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 5.6e-48 195.3 110 78.2
Dinv33823 Davidia involucrata HOM05D006599 ORTHO05D008304 1.0e-36 157.9 99 78.8
Lalb_Chr10g0093051 Lupinus albus HOM05D006599 ORTHO05D008304 1.0e-28 131.3 95 65.3
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 3.0e-25 119.8 72 68.1
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 1.3e-23 114.4 152 47.4
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 6.3e-23 112.1 100 62.0
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 7.0e-22 108.6 55 83.6
MD17G1057800 Malus domestica HOM05D006599 ORTHO05D008304 8.0e-18 95.1 53 73.6
TPR.G10380 Trifolium pratense HOM05D006599 ORTHO05D008304 2.6e-13 80.1 45 77.8
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 3.0e-09 66.6 140 35.0
Mapoly0033s0082 Marchantia polymorpha HOM05D027965 ORTHO05D048753 2.0e-08 63.9 113 33.6
Mapoly0033s0071 Marchantia polymorpha HOM05D006599 ORTHO05D008304 9.7e-08 61.6 114 30.7


User provided reference genes

Program Settings