Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G089400 Carya illinoinensis HOM05D007413 ORTHO05D009357 2.2e-55 218.8 115 100.0
Cfa007655 Carpinus fangiana HOM05D007413 ORTHO05D009357 3.2e-30 135.2 115 69.6
Manes.01G097200 Manihot esculenta HOM05D007413 ORTHO05D009357 1.9e-22 109.4 122 59.0
QL02p067998 Quercus lobata HOM05D007413 ORTHO05D009357 7.9e-21 104.0 124 58.9
CANSAT64G0406 Cannabis sativa HOM05D007413 ORTHO05D009357 2.3e-20 102.4 113 55.8
Potri.017G093000 Populus trichocarpa HOM05D007413 ORTHO05D009357 1.1e-19 100.1 108 55.6
Sabra17G0082000 Salix brachista HOM05D007413 ORTHO05D009357 1.1e-19 100.1 113 52.2
Hma1.2p1_0481F.1_g162070 Hydrangea macrophylla HOM05D007413 ORTHO05D009357 4.1e-17 91.7 112 50.9
Potri.004G119600 Populus trichocarpa HOM05D007413 ORTHO05D009357 1.2e-16 90.1 108 56.5
Manes.02G054200 Manihot esculenta HOM05D007413 ORTHO05D009357 4.5e-16 88.2 104 54.8
FAN09G1793 Fragaria x ananassa HOM05D007413 ORTHO05D009357 7.7e-16 87.4 100 55.0
FvH4_6g47010 Fragaria vesca HOM05D007413 ORTHO05D009357 2.9e-15 85.5 100 54.0
FAN14G4532 Fragaria x ananassa HOM05D007413 ORTHO05D009357 2.9e-15 85.5 100 54.0
MD17G1057900 Malus domestica HOM05D007413 ORTHO05D009357 2.9e-15 85.5 91 57.1
FAN02G2783 Fragaria x ananassa HOM05D007413 ORTHO05D009357 6.5e-15 84.3 100 53.0
FAN05G2048 Fragaria x ananassa HOM05D007413 ORTHO05D009357 8.5e-15 84.0 100 53.0
MD09G1064600 Malus domestica HOM05D007413 ORTHO05D009357 8.5e-15 84.0 115 52.2
Cpa.g.sc3362.1 Carica papaya HOM05D007413 ORTHO05D009357 1.2e-13 80.1 61 65.6
Sabra04G0069100 Salix brachista HOM05D007413 ORTHO05D009357 1.2e-13 80.1 79 54.4
Migut.K01283 Erythranthe guttata HOM05D007413 ORTHO05D009357 2.7e-13 79.0 106 48.1
CSS0018085 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 4.6e-13 78.2 101 49.5
Lj2g0007962 Lotus japonicus HOM05D007413 ORTHO05D009357 6.1e-13 77.8 61 59.0
CSS0009905 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 1.0e-12 77.0 112 46.4
ClCG07G007410 Citrullus lanatus HOM05D007413 ORTHO05D009357 1.4e-12 76.6 91 48.4
ClCG11G004700 Citrullus lanatus HOM05D007413 ORTHO05D009357 1.4e-12 76.6 115 47.8
TWI34G0597 Tripterygium wilfordii HOM05D007413 ORTHO05D009357 3.0e-12 75.5 111 49.5
Aqoxy3G03598 Aquilegia oxysepala HOM05D007413 ORTHO05D009357 3.9e-12 75.1 109 46.8
CAN.G206.219 Capsicum annuum HOM05D007413 ORTHO05D009357 3.9e-12 75.1 97 49.5
Ciclev10013609m.g Citrus clementina HOM05D007413 ORTHO05D009357 3.9e-12 75.1 114 52.6
Lalb_Chr06g0174991 Lupinus albus HOM05D007413 ORTHO05D009357 6.7e-12 74.3 56 62.5
Oeu062157.1 Olea europaea HOM05D007413 ORTHO05D009357 6.7e-12 74.3 99 52.5
VMungo0464G1276 Vigna mungo HOM05D007413 ORTHO05D009357 6.7e-12 74.3 110 43.6
Phvul.004G035200 Phaseolus vulgaris HOM05D007413 ORTHO05D009357 8.8e-12 73.9 114 46.5
SalBow1G0329 Salvia bowleyana HOM05D007413 ORTHO05D009357 8.8e-12 73.9 61 59.0
Glyma.13G057000 Glycine max HOM05D007413 ORTHO05D009357 1.1e-11 73.6 92 48.9
Nn3g17420 Nelumbo nucifera HOM05D007413 ORTHO05D009357 1.1e-11 73.6 111 46.8
Prupe.3G256400 Prunus persica HOM05D007413 ORTHO05D009357 1.1e-11 73.6 60 60.0
MELO3C024851.2 Cucumis melo HOM05D007413 ORTHO05D009357 2.0e-11 72.8 90 42.2
RcHm_v2.0_Chr2g0166071 Rosa chinensis HOM05D007413 ORTHO05D009357 2.5e-11 72.4 117 47.0
Sopen02g033450 Solanum pennellii HOM05D007413 ORTHO05D009357 2.5e-11 72.4 113 45.1
Solyc02g088740.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 3.3e-11 72.0 113 46.0
Nitab4.5_0000565g0230 Nicotiana tabacum HOM05D007413 ORTHO05D009357 5.7e-11 71.2 85 51.8
Eucgr.I02025 Eucalyptus grandis HOM05D007413 ORTHO05D009357 1.3e-10 70.1 82 51.2
Nn4g23392 Nelumbo nucifera HOM05D007413 ORTHO05D009357 1.3e-10 70.1 111 45.0
Thecc.04G093400 Theobroma cacao HOM05D007413 ORTHO05D009357 1.3e-10 70.1 111 42.3
MELO3C022028.2 Cucumis melo HOM05D007413 ORTHO05D009357 1.7e-10 69.7 102 48.0
Lsat_1_v5_gn_2_87601 Lactuca sativa HOM05D007413 ORTHO05D009357 2.2e-10 69.3 66 59.1
SalBow1G6503 Salvia bowleyana HOM05D007413 ORTHO05D009357 2.2e-10 69.3 74 50.0
Cc07_g04120 Coffea canephora HOM05D007413 ORTHO05D009357 2.8e-10 68.9 94 50.0
Gorai.012G049200 Gossypium raimondii HOM05D007413 ORTHO05D009357 3.7e-10 68.6 118 40.7
Lalb_Chr02g0158971 Lupinus albus HOM05D007413 ORTHO05D009357 4.8e-10 68.2 102 47.1
Gohir.D04G043900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 8.2e-10 67.4 113 42.5
Actinidia26249 Actinidia chinensis HOM05D007413 ORTHO05D009357 1.1e-09 67.0 107 41.1
Gohir.A05G371900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 1.1e-09 67.0 113 42.5
Nitab4.5_0010051g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 1.4e-09 66.6 85 48.2
Oeu007062.1 Olea europaea HOM05D007413 ORTHO05D009357 1.4e-09 66.6 67 49.3
Migut.H00635 Erythranthe guttata HOM05D007413 ORTHO05D009357 1.8e-09 66.2 95 47.4
Medtr6g015150 Medicago truncatula HOM05D007413 ORTHO05D009357 2.4e-09 65.9 55 54.5
PGR004G0469 Punica granatum HOM05D007413 ORTHO05D009357 2.4e-09 65.9 69 50.7
TPR.G10008 Trifolium pratense HOM05D007413 ORTHO05D009357 4.1e-09 65.1 104 44.2
Aa31LG2G3920 Aethionema arabicum HOM05D007413 ORTHO05D009357 1.2e-08 63.5 113 43.4
Duzib147G0133 Durio zibethinus HOM05D007413 ORTHO05D009357 1.2e-08 63.5 102 47.1
Psat1g067640 Pisum sativum HOM05D007413 ORTHO05D009357 1.2e-08 63.5 112 38.4
COL.COLO4_00052 Corchorus olitorius HOM05D007413 ORTHO05D009357 2.0e-08 62.8 61 52.5
Lsat_1_v5_gn_4_171221 Lactuca sativa HOM05D007413 ORTHO05D009357 2.0e-08 62.8 113 41.6
Nitab4.5_0005916g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 2.6e-08 62.4 88 45.5
SGA_v2.0_scaffold52G19169 Striga asiatica HOM05D007413 ORTHO05D009357 2.6e-08 62.4 59 52.5
Oeu010247.1 Olea europaea HOM05D007413 ORTHO05D009357 3.4e-08 62.0 85 47.1
CAN.G398.10 Capsicum annuum HOM05D007413 ORTHO05D009357 7.7e-08 60.8 60 50.0
Lalb_Chr21g0318381 Lupinus albus HOM05D007413 ORTHO05D009357 7.7e-08 60.8 57 52.6
CSS0018963 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 1.3e-07 60.1 112 42.9
unitig_62.g23378 Utricularia gibba HOM05D007413 ORTHO05D009357 1.7e-07 59.7 59 49.2
Rhsim08G0074700 Rhododendron simsii HOM05D007413 ORTHO05D009357 2.2e-07 59.3 41 73.2
ATR0064G025 Amborella trichopoda HOM05D007413 ORTHO05D009357 8.5e-07 57.4 56 50.0
SGA_v2.0_scaffold148G36473 Striga asiatica HOM05D007413 ORTHO05D009357 8.5e-07 57.4 92 42.4
AT3G29370 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 1.1e-06 57.0 103 44.7
Sopen02g016170 Solanum pennellii HOM05D007413 ORTHO05D009357 1.9e-06 56.2 97 41.2
Carub.0007s3668 Capsella rubella HOM05D007413 ORTHO05D009357 2.5e-06 55.8 69 42.0
CDE10G0699 Ceratophyllum demersum HOM05D007413 ORTHO05D009357 2.5e-06 55.8 100 38.0
AL5G19460 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 3.2e-06 55.5 106 39.6
PGSC0003DMG400025144 Solanum tuberosum HOM05D007413 ORTHO05D009357 3.2e-06 55.5 97 44.3
Sed0019528 Sechium edule HOM05D007413 ORTHO05D009357 5.5e-06 54.7 119 38.7
BcaC02g09685 Brassica carinata HOM05D007413 ORTHO05D009357 9.4e-06 53.9 103 40.8
C04p45600 Brassica napus HOM05D007413 ORTHO05D009357 9.4e-06 53.9 103 40.8
BolC4t26142H Brassica oleracea HOM05D007413 ORTHO05D009357 9.4e-06 53.9 103 40.8
CDE10G0216 Ceratophyllum demersum HOM05D001577 ORTHO05D008017 9.4e-06 53.9 110 34.5
Solyc02g066970.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 9.4e-06 53.9 102 41.2


User provided reference genes

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