Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 6.0e-58 227.3 112 100.0
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 8.2e-47 190.3 110 84.5
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 2.3e-41 172.2 112 75.9
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 5.7e-40 167.5 112 75.0
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 1.1e-35 153.3 112 69.6
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 4.2e-35 151.4 114 71.1
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 1.4e-33 146.4 110 63.6
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 8.8e-33 143.7 101 73.3
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 3.3e-32 141.7 113 68.1
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 7.4e-32 140.6 111 66.7
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 3.1e-30 135.2 116 64.7
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 2.6e-29 132.1 109 64.2
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 5.9e-29 131.0 114 64.0
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 3.8e-28 128.3 114 65.8
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 3.8e-28 128.3 114 65.8
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 6.5e-28 127.5 114 62.3
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 6.5e-28 127.5 112 59.8
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 1.1e-27 126.7 113 58.4
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 4.2e-27 124.8 101 63.4
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 4.2e-27 124.8 114 64.9
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 5.5e-27 124.4 102 65.7
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 5.5e-27 124.4 104 65.4
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 2.1e-26 122.5 105 61.0
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 2.1e-26 122.5 103 61.2
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 2.7e-26 122.1 85 72.9
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 8.0e-26 120.6 98 63.3
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 1.0e-25 120.2 111 54.1
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 1.4e-25 119.8 96 66.7
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 2.3e-25 119.0 117 55.6
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 3.0e-25 118.6 103 61.2
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 3.0e-25 118.6 99 64.6
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 3.0e-25 118.6 111 59.5
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 1.5e-24 116.3 111 54.1
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 2.0e-24 115.9 99 63.6
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 4.4e-24 114.8 116 54.3
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 7.4e-24 114.0 112 58.0
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 9.7e-24 113.6 99 62.6
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 9.7e-24 113.6 113 56.6
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.3e-23 113.2 99 62.6
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 1.7e-23 112.8 116 55.2
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 1.7e-23 112.8 111 54.1
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 1.7e-23 112.8 101 60.4
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 2.8e-23 112.1 116 55.2
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 3.7e-23 111.7 114 54.4
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 6.3e-23 110.9 84 70.2
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 8.2e-23 110.5 109 58.7
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.1e-22 110.2 92 63.0
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 1.2e-21 106.7 148 45.3
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 1.2e-21 106.7 115 53.9
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 1.6e-21 106.3 117 55.6
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.6e-21 106.3 101 57.4
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.0e-21 105.9 101 57.4
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 2.0e-21 105.9 92 63.0
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.6e-21 105.5 100 58.0
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.5e-21 105.1 99 60.6
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 3.5e-21 105.1 94 61.7
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 7.7e-21 104.0 103 59.2
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.0e-20 103.6 94 57.4
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.3e-20 103.2 121 52.1
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 3.8e-20 101.7 112 52.7
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 5.0e-20 101.3 113 54.9
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 8.5e-20 100.5 94 56.4
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 8.5e-20 100.5 116 49.1
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 1.9e-19 99.4 112 55.4
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 9.4e-19 97.1 113 54.0
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 1.2e-18 96.7 86 59.3
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 8.0e-18 94.0 110 51.8
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 4.0e-17 91.7 102 52.0
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 5.2e-17 91.3 80 57.5
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 6.7e-17 90.9 93 52.7
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 2.0e-16 89.4 112 49.1
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 2.6e-16 89.0 101 49.5
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 2.6e-16 89.0 103 49.5
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 3.3e-16 88.6 61 68.9
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 4.4e-16 88.2 102 51.0
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 5.7e-16 87.8 70 60.0
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 5.7e-16 87.8 83 55.4
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 5.7e-16 87.8 83 55.4
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 9.7e-16 87.0 94 52.1
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 2.8e-15 85.5 102 51.0
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 2.8e-15 85.5 61 65.6
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 2.8e-15 85.5 91 53.8
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 3.7e-15 85.1 87 55.2
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 3.1e-14 82.0 79 57.0
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 3.1e-14 82.0 79 57.0
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 3.1e-14 82.0 79 57.0
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 4.1e-14 81.6 108 50.9
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 4.1e-14 81.6 87 57.5
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 5.3e-14 81.3 112 47.3
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 5.3e-14 81.3 97 51.5
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 1.6e-13 79.7 101 50.5
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 3.5e-13 78.6 94 50.0
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 5.9e-13 77.8 84 57.1
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 7.7e-13 77.4 89 46.1
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 7.7e-13 77.4 103 48.5
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 1.3e-12 76.6 110 47.3
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 5.0e-12 74.7 119 44.5
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 5.0e-12 74.7 70 54.3
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 1.9e-11 72.8 98 44.9
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 4.2e-11 71.6 98 48.0
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 5.5e-11 71.2 70 52.9
MBI16_g10826_MAGBIO Magnolia biondii HOM05D006882 ORTHO05D008688 9.4e-11 70.5 94 44.7
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 1.2e-10 70.1 59 54.2
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 8.0e-10 67.4 77 51.9
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 1.0e-09 67.0 54 64.8
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 1.4e-09 66.6 71 53.5
Peaxi162Scf00025g00208 Petunia axillaris HOM05D006882 ORTHO05D008688 4.0e-09 65.1 71 52.1
arahy.Tifrunner.gnm1.ann1.K9PA59 Arachis hypogaea HOM05D006882 ORTHO05D008688 1.7e-07 59.7 50 56.0
CsaV3_5G014380 Cucumis sativus L. HOM05D006882 ORTHO05D008688 1.8e-06 56.2 78 42.3
Mapoly0103s0008 Marchantia polymorpha HOM05D022139 ORTHO05D008688 2.4e-06 55.8 109 35.8
HanXRQChr09g0272731 Helianthus annuus HOM05D006882 ORTHO05D048217 7.0e-06 54.3 38 63.2


User provided reference genes

Program Settings