Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.1e-116 423.3 207 100.0
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 2.1e-101 372.5 219 83.1
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 8.2e-101 370.5 219 83.6
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 9.3e-97 357.1 213 79.8
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.1e-96 355.9 217 79.3
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 2.9e-90 335.5 218 73.4
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 8.5e-90 334.0 218 72.0
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 1.4e-89 333.2 216 73.6
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 5.5e-89 331.3 213 72.8
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 7.2e-89 330.9 217 73.3
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 2.7e-88 328.9 218 70.6
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 2.7e-88 328.9 218 70.6
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 3.6e-88 328.6 217 69.6
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 3.6e-88 328.6 218 70.2
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 3.6e-88 328.6 217 71.0
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 4.6e-88 328.2 214 72.4
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 7.9e-88 327.4 217 71.0
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 2.3e-87 325.9 214 72.0
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 3.0e-87 325.5 218 70.2
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 6.7e-87 324.3 218 68.8
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 8.8e-87 323.9 218 69.7
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 8.8e-87 323.9 218 68.8
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 1.1e-86 323.6 218 67.9
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 1.1e-86 323.6 217 69.6
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 1.9e-86 322.8 212 70.8
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.9e-86 322.8 218 69.3
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 3.3e-86 322.0 218 70.2
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 4.3e-86 321.6 217 67.7
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 4.3e-86 321.6 217 68.2
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.2e-85 319.3 214 70.1
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 2.8e-85 318.9 218 68.3
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.8e-85 318.9 214 71.5
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 3.7e-85 318.5 214 69.2
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 3.7e-85 318.5 217 68.2
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 3.7e-85 318.5 214 70.6
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 6.3e-85 317.8 217 68.2
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 8.2e-85 317.4 218 71.1
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 1.1e-84 317.0 219 69.9
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 1.1e-84 317.0 219 69.9
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 1.1e-84 317.0 210 71.9
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 1.1e-84 317.0 218 70.6
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 1.4e-84 316.6 210 71.4
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 1.4e-84 316.6 213 68.1
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 1.8e-84 316.2 213 69.0
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 3.1e-84 315.5 213 68.1
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 6.9e-84 314.3 213 68.5
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 9.1e-84 313.9 212 67.9
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 9.1e-84 313.9 215 68.4
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 9.1e-84 313.9 218 66.1
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 2.6e-83 312.4 213 67.6
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 2.6e-83 312.4 219 67.6
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 3.4e-83 312.0 218 67.4
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 1.3e-82 310.1 218 66.1
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 1.3e-82 310.1 219 67.6
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 1.7e-82 309.7 218 66.5
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 2.2e-82 309.3 215 68.8
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 2.2e-82 309.3 214 66.4
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 2.9e-82 308.9 213 67.6
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 6.5e-82 307.8 210 69.5
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.4e-81 306.6 216 66.7
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 2.5e-81 305.8 218 67.9
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 7.2e-81 304.3 212 67.0
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 9.4e-81 303.9 214 67.8
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 2.1e-80 302.8 215 66.5
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 4.7e-80 301.6 217 64.1
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 4.7e-80 301.6 217 65.9
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 1.4e-79 300.1 217 66.4
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 3.3e-78 295.4 211 65.9
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 4.4e-78 295.0 209 65.6
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.4e-78 295.0 210 64.3
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 4.4e-78 295.0 216 63.9
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 5.7e-78 294.7 248 58.9
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 1.3e-77 293.5 216 64.8
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.7e-77 293.1 223 62.3
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 1.7e-77 293.1 218 63.3
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 2.8e-77 292.4 218 63.3
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 3.7e-77 292.0 218 62.8
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 3.7e-77 292.0 218 63.8
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 3.7e-77 292.0 215 63.3
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 8.2e-77 290.8 218 62.8
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.1e-76 290.4 216 64.4
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 1.8e-76 289.7 216 63.0
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 1.8e-76 289.7 218 63.3
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 1.8e-76 289.7 218 63.3
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 4.1e-76 288.5 216 63.0
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 4.1e-76 288.5 216 63.4
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 9.1e-76 287.3 210 64.3
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 2.6e-75 285.8 216 61.6
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 5.0e-74 281.6 206 64.1
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 6.5e-74 281.2 215 63.7
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 3.2e-73 278.9 212 62.3
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 1.4e-71 273.5 191 65.4
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.3e-71 272.7 191 65.4
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 4.4e-70 268.5 213 60.1
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.4e-68 263.5 206 63.6
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 1.4e-68 263.5 211 55.5
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 1.8e-68 263.1 213 58.2
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 1.6e-67 260.0 214 55.1
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 4.5e-67 258.5 217 56.7
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 7.7e-67 257.7 213 55.9
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 2.2e-66 256.1 193 62.7
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 3.8e-66 255.4 178 69.1
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.5e-65 252.7 198 60.1
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 2.5e-65 252.7 217 58.1
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.0e-63 245.4 198 59.6
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.5e-62 243.4 204 54.9
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 2.0e-62 243.0 207 53.6
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.3e-61 238.0 166 65.7
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 2.4e-60 236.1 144 75.7
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 1.6e-59 233.4 204 56.4
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 5.9e-59 231.5 206 51.5
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 7.2e-57 224.6 212 52.8
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.1e-56 223.0 196 57.7
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 6.1e-56 221.5 212 51.4
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.8e-52 209.9 212 50.0
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 1.6e-51 206.8 146 62.3
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 1.6e-51 206.8 206 46.6
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 9.5e-49 197.6 144 62.5
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.1e-48 196.4 238 46.6
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 1.8e-47 193.4 140 64.3
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.3e-45 187.2 186 48.9
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 2.4e-44 183.0 171 52.6
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 5.9e-43 178.3 126 64.3
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.7e-42 176.8 163 52.1
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.5e-41 173.7 207 41.5
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 2.5e-41 172.9 199 47.7
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.3e-37 160.6 110 69.1
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.7e-37 160.2 207 41.5
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 3.5e-35 152.5 110 64.5
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 6.6e-26 121.7 87 71.3
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 1.5e-25 120.6 105 57.1
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 1.5e-25 120.6 105 57.1
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 9.5e-25 117.9 105 55.2
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 2.1e-24 116.7 66 72.7
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 4.7e-24 115.5 211 38.9
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 1.4e-23 114.0 76 72.4
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 1.2e-22 110.9 230 32.2
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 3.7e-21 105.9 204 30.9
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.1e-20 104.4 138 45.7
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 5.4e-20 102.1 66 65.2
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 4.4e-14 82.4 207 27.5
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 4.4e-14 82.4 194 29.9
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.3e-13 80.9 51 66.7
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.3e-13 80.9 84 48.8
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.9e-13 79.7 108 45.4
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 3.2e-12 76.3 50 66.0
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 5.4e-12 75.5 180 28.9
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 1.0e-10 71.2 47 70.2
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.0e-10 71.2 185 29.7
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 1.7e-10 70.5 40 77.5
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 1.4e-07 60.8 82 47.6
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 4.0e-07 59.3 82 46.3
CAN.G1148.3 Capsicum annuum HOM05D001556 ORTHO05D001505 5.8e-06 55.5 59 52.5


User provided reference genes

Program Settings