Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1481.8 779 100.0
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1262.7 778 86.4
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1246.9 852 79.9
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1246.5 786 83.2
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1213.0 781 81.6
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1210.3 783 81.7
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1209.1 779 81.0
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1208.4 799 79.7
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1202.6 777 81.0
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1201.0 783 81.5
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1200.3 789 80.4
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1196.0 783 80.3
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1195.6 780 80.5
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1191.4 782 80.8
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1191.0 779 79.7
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1190.3 793 79.2
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1187.9 781 80.5
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1182.2 779 79.6
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1180.6 781 80.7
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1180.2 800 79.2
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1176.8 793 78.7
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1170.2 783 78.8
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1169.8 778 80.2
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1168.7 784 79.2
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1168.7 778 80.1
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1166.8 793 78.8
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1164.8 783 78.8
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1163.3 779 78.4
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1161.0 782 79.5
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1159.1 779 78.6
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1158.7 792 78.7
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1158.3 781 78.2
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1157.1 735 82.2
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1157.1 779 78.2
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1156.0 779 77.9
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1153.3 778 77.5
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1151.7 781 77.6
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1147.9 787 77.5
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1146.7 828 75.0
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1146.7 786 77.1
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1143.6 782 77.7
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1139.4 782 77.5
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1139.0 792 77.4
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1134.8 827 72.9
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1130.5 778 75.8
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1130.2 787 75.9
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1130.2 779 76.4
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1128.6 781 78.7
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1125.2 785 76.4
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1118.6 778 75.6
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 0.0e+00 1118.2 780 75.3
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1117.8 766 75.5
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1117.8 783 75.6
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1115.5 778 75.3
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 0.0e+00 1114.4 674 85.8
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1112.8 781 74.6
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1110.1 767 75.4
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1109.0 779 75.4
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1108.2 779 75.0
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 0.0e+00 1104.4 878 69.7
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1101.3 780 75.1
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1100.9 766 74.5
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 0.0e+00 1094.7 792 73.4
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1089.7 779 73.4
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1086.6 777 73.6
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1085.5 780 73.2
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 0.0e+00 1082.4 782 72.8
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1082.0 767 73.9
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1079.7 791 73.5
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 0.0e+00 1078.5 807 72.0
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 0.0e+00 1078.5 648 86.0
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1078.2 766 73.4
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1077.4 766 73.1
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1077.4 766 73.4
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 0.0e+00 1077.4 766 73.4
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 0.0e+00 1077.4 766 73.1
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1075.1 788 71.1
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 5.3e-312 1074.7 741 76.8
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 5.3e-312 1073.5 787 70.8
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 6.4e-311 1070.5 789 71.6
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 5.3e-310 1067.4 788 73.0
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 6.9e-310 1067.0 775 72.0
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 2.4e-307 1058.5 648 84.4
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 4.2e-307 1057.7 787 70.6
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 5.4e-307 1057.4 792 71.1
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 7.1e-307 1057.0 779 70.7
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 1.3e-305 1052.7 776 71.8
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.8e-305 1052.4 648 84.1
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 2.4e-302 1042.0 789 70.0
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 4.0e-302 1041.2 775 71.5
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 1.2e-301 1039.6 779 69.7
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.5e-301 1039.3 779 71.8
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 3.0e-297 1025.0 781 68.8
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 1.3e-292 1009.6 764 68.8
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 1.4e-286 989.6 766 69.3
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 2.0e-285 985.7 740 69.9
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 3.2e-283 978.4 789 67.3
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 5.5e-283 977.6 752 69.3
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 1.1e-280 969.9 766 68.5
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 7.4e-280 967.2 786 67.0
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 7.4e-280 967.2 775 65.8
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.4e-278 963.0 763 67.0
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 3.0e-273 945.3 767 66.6
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 4.4e-272 941.4 790 62.7
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 3.8e-268 928.3 742 68.1
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 3.3e-264 915.2 768 65.9
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.2e-259 898.3 698 72.1
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 3.4e-256 888.6 795 60.8
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.1e-251 873.6 780 62.1
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 2.7e-250 869.0 807 60.3
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 7.7e-245 850.9 763 58.5
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 5.0e-236 821.6 638 69.3
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.6e-218 763.5 628 65.6
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 1.6e-213 746.9 480 80.8
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 2.1e-202 709.9 784 50.9
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 6.5e-183 645.2 819 46.3
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 6.5e-183 645.2 819 46.3
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 8.4e-183 644.8 622 59.5
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 2.1e-178 630.2 837 45.0
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 5.9e-176 622.1 532 64.8
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.2e-170 603.6 655 50.8
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 2.6e-168 596.7 458 66.6
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.5e-166 589.0 821 43.6
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 1.1e-163 581.3 801 44.3
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 6.9e-161 572.0 433 67.7
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 3.0e-156 556.6 557 55.7
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 1.2e-136 491.5 383 70.0
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 3.3e-118 430.3 606 47.4
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-105 388.7 617 42.8
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 1.5e-86 325.1 213 79.8
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 3.6e-77 293.9 304 57.2
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 9.0e-76 289.3 208 74.5
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 4.5e-75 287.0 802 30.7
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 5.5e-73 280.0 198 75.3
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 9.3e-73 279.3 198 75.3
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 9.3e-73 279.3 198 75.3
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 9.6e-70 269.2 212 68.9
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 5.5e-65 253.4 236 58.5
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 3.2e-57 227.6 459 38.3
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 3.9e-55 220.7 556 33.8
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 6.9e-52 209.9 122 82.8
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 4.5e-51 207.2 131 81.7
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.4e-39 169.1 93 86.0
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 3.0e-39 167.9 787 27.1
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 5.2e-39 167.2 88 85.2
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 5.2e-39 167.2 88 85.2
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.4e-38 164.1 243 44.4
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.4e-36 158.3 361 32.4
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.2e-31 140.6 130 56.2
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 1.2e-27 129.4 142 49.3
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 1.6e-24 119.0 90 63.3
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 4.0e-23 114.4 75 84.0
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 3.7e-21 107.8 74 68.9
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 1.4e-20 105.9 73 71.2
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.4e-20 105.9 113 46.0
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 1.2e-19 102.8 57 94.7
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.9e-19 100.5 107 50.5
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 8.6e-18 96.7 139 46.8
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.4e-15 89.4 83 54.2
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 2.3e-15 88.6 54 81.5
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 4.0e-15 87.8 59 67.8
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 1.1e-12 79.7 52 84.6
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 2.7e-11 75.1 52 80.8
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 1.3e-10 72.8 51 78.4
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 1.3e-10 72.8 77 48.1
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 3.8e-10 71.2 93 52.7
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 5.0e-10 70.9 105 44.8
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 1.8e-07 62.4 87 48.3
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 3.0e-07 61.6 76 50.0
Oeu049880.1 Olea europaea HOM05D000526 ORTHO05D000956 9.8e-06 56.6 70 50.0


User provided reference genes

Program Settings