Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 3.2e-69 265.4 181 100.0
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 1.9e-61 239.6 178 83.7
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 1.7e-57 226.5 174 89.1
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 6.3e-57 224.6 174 87.4
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 1.4e-56 223.4 179 65.4
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 3.1e-56 222.2 174 87.4
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 7.0e-56 221.1 178 86.5
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 2.0e-55 219.5 174 86.8
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 2.7e-55 219.2 174 83.3
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 2.7e-55 219.2 174 86.2
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 2.7e-55 219.2 174 82.2
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 2.7e-55 219.2 180 88.3
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 2.7e-55 219.2 175 88.0
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 3.5e-55 218.8 174 87.9
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 3.5e-55 218.8 174 85.1
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 4.5e-55 218.4 178 84.8
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 5.9e-55 218.0 174 82.8
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 7.7e-55 217.6 174 87.4
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 1.0e-54 217.2 174 86.2
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.0e-54 217.2 174 86.8
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 1.0e-54 217.2 174 86.8
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 1.3e-54 216.9 174 85.6
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.3e-54 216.9 174 83.3
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 1.3e-54 216.9 178 84.3
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 1.7e-54 216.5 174 84.5
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 1.7e-54 216.5 174 85.1
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 2.9e-54 215.7 179 82.7
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.9e-54 215.7 178 62.9
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 2.9e-54 215.7 174 86.8
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 2.9e-54 215.7 174 83.9
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 2.9e-54 215.7 174 82.8
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 6.5e-54 214.5 174 81.0
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 6.5e-54 214.5 174 84.5
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 1.1e-53 213.8 178 83.1
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.5e-53 213.4 174 85.1
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 1.5e-53 213.4 178 84.8
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 2.5e-53 212.6 174 84.5
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 3.2e-53 212.2 174 85.1
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 4.2e-53 211.8 174 85.1
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 5.5e-53 211.5 183 80.9
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 7.2e-53 211.1 174 84.5
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 9.4e-53 210.7 173 87.3
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 1.2e-52 210.3 179 83.8
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.2e-52 210.3 179 84.4
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 1.6e-52 209.9 179 84.9
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 1.6e-52 209.9 177 76.8
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 2.1e-52 209.5 174 84.5
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 2.1e-52 209.5 174 84.5
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 2.7e-52 209.1 179 84.9
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 3.6e-52 208.8 174 83.9
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 4.7e-52 208.4 174 82.2
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 4.7e-52 208.4 181 81.2
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 4.7e-52 208.4 178 63.5
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 4.7e-52 208.4 174 84.5
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 6.1e-52 208.0 179 82.1
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 6.1e-52 208.0 174 82.2
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 1.4e-51 206.8 174 84.5
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 2.3e-51 206.1 174 83.9
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 3.0e-51 205.7 174 83.9
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 3.0e-51 205.7 174 83.9
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 4.0e-51 205.3 174 84.5
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 6.8e-51 204.5 174 83.3
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 8.8e-51 204.1 179 83.2
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 8.8e-51 204.1 178 80.3
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.2e-50 203.8 174 83.3
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 2.0e-50 203.0 174 83.3
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 5.7e-50 201.4 174 83.3
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.7e-49 199.9 201 54.2
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 3.7e-49 198.7 174 82.2
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 8.3e-49 197.6 174 82.2
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 8.3e-49 197.6 174 83.3
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 1.4e-48 196.8 175 82.9
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 1.8e-48 196.4 176 61.4
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 1.8e-48 196.4 174 80.5
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 4.1e-48 195.3 174 81.0
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 1.2e-47 193.7 174 80.5
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 2.0e-47 193.0 176 60.2
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 2.0e-47 193.0 176 60.2
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 3.5e-47 192.2 176 77.8
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 4.5e-47 191.8 155 88.4
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 1.0e-46 190.7 175 79.4
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 3.8e-46 188.7 247 46.6
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 4.2e-45 185.3 175 55.4
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 3.6e-44 182.2 173 76.9
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 1.8e-43 179.9 174 77.0
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 4.0e-43 178.7 179 54.2
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 8.9e-43 177.6 191 49.7
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 1.5e-42 176.8 174 74.7
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 2.2e-41 172.9 195 71.8
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 3.7e-41 172.2 179 50.8
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 1.1e-40 170.6 211 61.1
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 2.7e-39 166.0 145 85.5
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.5e-39 165.6 174 52.3
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 7.8e-39 164.5 175 46.9
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 1.7e-38 163.3 173 53.8
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 3.9e-38 162.2 151 54.3
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 5.0e-38 161.8 174 48.3
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 7.3e-37 157.9 139 83.5
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 2.1e-36 156.4 174 71.3
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 4.7e-36 155.2 138 75.4
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 6.1e-36 154.8 87 85.1
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 5.2e-35 151.8 138 85.5
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 5.2e-35 151.8 174 49.4
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 2.0e-34 149.8 181 64.6
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.2e-33 146.4 140 84.3
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.9e-33 146.0 83 80.7
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 4.6e-31 138.7 127 78.0
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 7.8e-31 137.9 166 69.3
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.3e-30 137.1 166 69.3
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.3e-30 137.1 176 67.0
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 3.0e-30 136.0 88 75.0
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 2.8e-28 129.4 88 70.5
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 2.3e-27 126.3 124 56.5
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 2.6e-26 122.9 213 39.4
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 2.9e-25 119.4 87 63.2
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 4.6e-23 112.1 116 52.6
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 6.0e-23 111.7 165 42.4
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 6.0e-23 111.7 177 41.2
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 3.2e-16 89.4 114 42.1
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 6.2e-12 75.1 98 44.9
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.2e-10 70.9 47 70.2
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 4.9e-09 65.5 36 83.3
SEGI_00674 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 2.4e-08 63.2 49 57.1
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.6e-07 60.5 36 75.0
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 1.7e-06 57.0 36 75.0
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.1e-06 55.5 36 66.7


User provided reference genes

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