Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 7.8e-208 726.9 361 100.0
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 4.8e-165 584.7 365 75.3
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 6.3e-165 584.3 360 78.3
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 1.4e-164 583.2 365 75.6
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 6.9e-164 580.9 360 77.8
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 1.2e-163 580.1 365 74.0
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 1.9e-161 572.8 365 74.2
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 9.1e-156 553.9 364 73.9
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 1.5e-155 553.1 373 72.7
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 2.9e-154 548.9 361 74.2
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 1.4e-151 540.0 360 73.1
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 2.3e-151 539.3 366 72.4
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 3.0e-151 538.9 353 76.5
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 5.1e-151 538.1 362 73.8
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 8.8e-151 537.3 365 71.2
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 1.5e-150 536.6 370 71.6
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 3.3e-150 535.4 365 70.7
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 1.3e-149 533.5 368 70.4
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 2.2e-149 532.7 367 70.8
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 4.8e-149 531.6 370 70.3
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 3.1e-148 528.9 369 69.4
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 1.0e-146 523.9 362 71.8
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 1.0e-146 523.9 369 70.2
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 1.7e-146 523.1 371 70.1
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 2.9e-146 522.3 365 69.0
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 6.5e-146 521.2 363 71.3
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 8.5e-146 520.8 369 67.2
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 8.5e-146 520.8 373 69.2
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 8.5e-146 520.8 370 70.0
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 1.5e-145 520.0 363 71.1
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.5e-145 519.2 363 71.1
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.5e-145 519.2 363 71.1
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 2.5e-145 519.2 369 69.4
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.2e-145 518.8 363 70.8
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 5.5e-145 518.1 370 69.7
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.6e-144 515.4 363 71.1
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 4.7e-144 515.0 373 66.0
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 6.1e-144 514.6 371 68.5
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 4.0e-143 511.9 368 68.5
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 2.6e-142 509.2 377 66.3
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 2.6e-142 509.2 371 68.2
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 9.7e-142 507.3 371 67.1
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 2.8e-141 505.8 365 68.5
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 4.8e-141 505.0 375 68.3
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 8.2e-141 504.2 373 65.7
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 1.4e-140 503.4 383 65.5
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 3.1e-140 502.3 377 66.0
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.3e-140 501.5 374 65.8
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.1e-140 500.7 374 65.5
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 2.0e-139 499.6 362 65.7
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 1.0e-138 497.3 370 63.5
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.7e-138 496.5 374 65.2
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 1.7e-138 496.5 366 67.2
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 3.8e-138 495.4 370 63.5
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 2.4e-132 476.1 371 63.6
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 4.1e-132 475.3 372 63.4
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 5.4e-132 474.9 372 63.2
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 7.0e-132 474.6 363 63.4
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 2.7e-131 472.6 371 63.3
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 3.5e-131 472.2 371 63.3
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 2.2e-130 469.5 360 66.9
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.9e-130 469.2 372 62.6
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 3.2e-129 465.7 372 63.7
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.5e-129 464.9 374 61.2
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 1.6e-128 463.4 367 62.4
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 1.6e-128 463.4 367 62.4
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 2.7e-128 462.6 368 62.2
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 3.6e-128 462.2 367 62.1
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 3.6e-128 462.2 372 62.1
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.7e-128 461.8 374 60.7
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.0e-127 460.7 374 61.0
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 1.4e-127 460.3 350 64.9
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 2.3e-127 459.5 371 61.5
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.0e-126 456.4 374 62.6
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 5.7e-126 454.9 362 61.6
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 9.8e-126 454.1 366 63.9
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 1.3e-125 453.8 368 63.3
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 1.7e-125 453.4 366 63.4
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.7e-125 452.2 373 62.2
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 4.9e-125 451.8 366 63.4
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 8.3e-125 451.1 366 63.4
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.8e-124 449.9 370 61.9
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 9.2e-124 447.6 363 64.2
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.6e-123 446.8 362 64.9
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 5.9e-123 444.9 374 60.7
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 1.7e-122 443.4 368 61.1
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 8.6e-122 441.0 368 61.4
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.5e-121 439.5 374 59.6
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 3.6e-120 435.6 366 60.9
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 2.3e-119 433.0 365 58.9
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 4.0e-119 432.2 367 60.8
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 4.0e-119 432.2 365 59.7
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 2.0e-118 429.9 353 59.8
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 3.4e-118 429.1 382 57.9
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.2e-117 426.4 364 59.1
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.9e-117 426.0 373 56.3
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 8.3e-117 424.5 361 60.1
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 1.8e-116 423.3 364 61.3
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 5.0e-114 415.2 351 59.8
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.6e-114 414.8 359 56.0
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 2.5e-113 412.9 381 55.9
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.4e-110 402.1 362 55.5
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 6.0e-107 391.7 366 54.9
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 2.4e-100 369.8 336 57.4
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 3.2e-100 369.4 336 57.4
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 5.2e-95 352.1 374 49.5
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 2.0e-94 350.1 457 42.2
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 7.8e-91 338.2 373 48.3
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.9e-89 333.6 290 55.9
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.6e-88 330.5 359 46.5
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 2.2e-85 320.1 302 54.6
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 3.0e-82 309.7 351 47.3
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 9.0e-79 298.1 376 44.4
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 8.4e-77 291.6 337 46.9
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.1e-73 281.2 338 44.7
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 1.6e-67 260.8 372 42.2
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 7.4e-65 251.9 365 40.3
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 1.6e-64 250.8 199 61.3
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 1.7e-61 240.7 229 58.1
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 4.2e-60 236.1 182 62.1
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 8.2e-56 221.9 173 63.0
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 1.7e-53 214.2 202 50.0
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 1.5e-49 201.1 279 38.0
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 9.7e-49 198.4 283 40.6
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 6.9e-47 192.2 163 57.7
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 1.6e-43 181.0 144 59.0
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 6.7e-42 175.6 296 33.4
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 9.7e-41 171.8 130 62.3
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 2.8e-40 170.2 130 61.5
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.5e-36 157.1 130 60.0
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 8.8e-34 148.7 242 43.4
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 3.7e-32 143.3 111 64.9
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 1.0e-29 135.2 108 63.9
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 6.5e-29 132.5 93 63.4
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 8.5e-29 132.1 93 63.4
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.2e-27 128.3 93 61.3
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 6.7e-26 122.5 93 60.2
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.6e-25 120.6 98 58.2
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 7.0e-23 112.5 89 66.3
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 6.5e-21 105.9 103 57.3
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 2.5e-20 104.0 282 26.6
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 4.7e-19 99.8 93 54.8
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 4.7e-19 99.8 93 54.8
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 2.2e-16 90.9 70 57.1
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 5.4e-15 86.3 76 56.6
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.8e-13 80.1 79 54.4
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 1.9e-12 77.8 45 82.2
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.6e-11 74.7 65 58.5
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 6.1e-11 72.8 58 63.8
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.0e-10 72.0 73 52.1


User provided reference genes

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