Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1486.1 747 100.0
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1325.1 749 89.1
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1318.9 749 88.9
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1303.1 752 86.2
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1302.7 750 86.8
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1299.6 751 85.8
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1299.3 747 87.3
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1294.3 752 85.4
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1294.3 747 85.5
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1293.9 752 85.1
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1293.5 751 86.0
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1293.1 752 86.2
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1291.9 749 86.4
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1291.6 748 85.2
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1289.2 747 85.8
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1288.1 747 85.7
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1286.9 747 85.1
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1285.8 747 85.5
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1285.4 747 84.7
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1285.4 747 85.3
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1285.4 749 85.4
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1284.2 747 85.5
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1283.9 747 85.1
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1283.1 751 85.0
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1281.9 747 84.5
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1280.8 751 85.6
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1280.4 746 84.9
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1278.8 748 84.4
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1277.7 749 84.4
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1276.9 753 85.5
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1275.8 747 85.1
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1275.8 750 84.3
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1275.8 749 84.0
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1275.0 749 83.8
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1274.6 750 83.9
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1274.2 751 84.7
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1274.2 751 84.6
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1273.5 747 83.9
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1273.1 747 84.6
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1272.7 781 81.8
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1269.2 750 84.3
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1268.4 751 84.2
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1268.1 751 84.0
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1266.1 750 84.3
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1265.0 748 83.3
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1261.9 711 87.3
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1261.9 750 84.1
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1260.7 747 84.2
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1259.6 750 83.7
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1259.2 741 83.8
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1258.8 748 83.8
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1255.0 747 83.7
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1253.8 747 83.4
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1251.9 747 82.7
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1250.0 806 79.2
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1249.6 748 82.9
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1248.8 748 82.9
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1245.3 747 83.0
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1244.6 750 82.9
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 748 82.4
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 751 82.3
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1243.8 751 82.6
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1243.0 747 83.0
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1242.3 750 82.5
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1241.5 748 82.4
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1241.1 751 82.0
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1240.7 749 82.5
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1240.3 747 81.9
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1238.0 747 82.7
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1238.0 760 81.7
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1236.1 762 81.5
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1231.9 752 81.8
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 757 82.0
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1228.0 848 75.0
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1225.3 747 81.1
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1223.8 750 80.3
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1221.8 751 80.7
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1221.1 751 80.7
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1216.8 747 80.3
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1216.8 697 84.4
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1216.1 750 80.1
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1216.1 750 80.3
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1215.7 748 80.1
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1215.7 751 80.2
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1214.5 748 79.8
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1213.7 742 80.6
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1213.4 752 79.8
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1212.2 750 80.1
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1210.7 748 79.4
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1210.7 751 80.4
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1210.3 750 79.9
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1210.3 750 79.9
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1210.3 743 80.6
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1209.9 748 80.2
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1207.2 754 78.8
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1206.4 751 80.7
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1204.5 748 79.0
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1202.2 748 78.9
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1196.8 724 81.4
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1196.4 722 81.9
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1189.5 781 75.8
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1187.2 658 87.5
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1175.2 719 80.1
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1171.8 751 78.7
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1163.3 749 77.4
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1159.1 666 85.9
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1157.5 658 86.5
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1156.4 721 79.5
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1152.5 658 85.9
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1151.3 751 76.8
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1140.2 750 76.3
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1138.3 749 77.3
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1127.5 720 77.8
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1117.8 658 85.0
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1117.1 1052 58.5
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1090.9 721 75.5
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 7.7e-311 1070.1 624 85.4
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 5.1e-310 1067.4 752 74.7
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 1.2e-287 993.0 679 70.0
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 6.9e-283 977.2 677 69.7
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 3.4e-282 974.9 678 69.2
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.9e-281 971.8 675 70.5
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.9e-281 971.8 675 70.5
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.1e-280 969.9 675 70.4
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 9.3e-280 966.8 675 70.2
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 3.0e-262 908.7 593 77.1
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 1.5e-258 896.3 593 76.6
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 4.3e-253 878.2 679 62.6
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 3.6e-231 805.4 686 58.6
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 2.7e-223 779.2 696 57.0
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 5.9e-210 734.9 677 62.0
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 3.8e-209 732.3 675 55.9
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 6.4e-196 688.3 707 50.4
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 2.8e-175 619.8 739 46.0
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 9.0e-166 588.2 361 79.2
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 6.7e-161 572.0 323 88.9
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.1e-155 554.7 305 86.6
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 3.1e-142 510.0 300 84.0
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 2.2e-132 477.2 301 80.4
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 4.8e-127 459.5 309 74.4
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.7e-119 434.5 294 72.1
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 9.1e-110 402.1 236 82.2
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 3.8e-100 370.2 241 77.6
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.4e-96 357.1 300 65.3
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 2.4e-94 350.9 219 79.9
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 5.4e-94 349.7 300 64.3
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 6.1e-90 336.3 226 76.1
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 4.0e-73 280.4 170 79.4
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 2.1e-66 258.1 126 97.6
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 2.1e-66 258.1 365 40.3
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 6.2e-66 256.5 405 44.4
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 9.9e-64 249.2 175 71.4
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 3.5e-61 240.7 260 53.5
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 2.5e-59 234.6 114 97.4
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 1.8e-49 201.8 141 75.2
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 6.0e-45 186.8 117 77.8
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.6e-40 171.4 184 51.6
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 3.4e-40 171.0 102 74.5
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 2.9e-39 167.9 122 70.5
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 5.7e-35 153.7 109 67.0
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 6.2e-34 150.2 142 53.5
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.1e-33 149.4 132 64.4
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 2.3e-28 131.7 83 78.3
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 1.5e-27 129.0 141 53.9
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.5e-27 129.0 105 61.9
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 8.2e-26 123.2 61 90.2
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 2.9e-23 114.8 220 30.9
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 8.5e-23 113.2 99 62.6
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 5.5e-22 110.5 141 53.9
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 2.2e-15 88.6 50 78.0
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 7.2e-14 83.6 56 73.2
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 3.7e-10 71.2 38 89.5
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 1.8e-09 68.9 42 81.0
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 2.5e-06 58.5 32 78.1


User provided reference genes

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