Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.6e-85 318.5 145 100.0
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 5.9e-82 307.4 145 95.9
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.9e-76 288.5 145 88.3
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.8e-75 285.8 145 88.3
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 5.4e-75 284.3 145 86.9
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 9.2e-75 283.5 145 86.2
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 2.1e-71 272.3 137 88.3
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 5.8e-69 264.2 137 86.1
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 2.2e-68 262.3 145 81.4
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.2e-68 262.3 134 83.6
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 4.9e-68 261.2 138 80.4
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 1.9e-67 259.2 135 80.0
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 7.0e-67 257.3 136 80.1
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 1.2e-66 256.5 134 82.8
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 1.2e-66 256.5 137 80.3
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.6e-66 256.1 135 80.0
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 2.0e-66 255.8 136 79.4
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 2.0e-66 255.8 134 80.6
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 3.5e-66 255.0 136 80.1
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 3.5e-66 255.0 134 82.1
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 3.5e-66 255.0 134 82.1
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 7.8e-66 253.8 141 77.3
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.3e-65 253.1 137 77.4
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 1.3e-65 253.1 134 79.1
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.3e-65 253.1 137 78.1
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.7e-65 252.7 135 79.3
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 2.3e-65 252.3 137 78.8
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 5.0e-65 251.1 136 78.7
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 6.6e-65 250.8 137 76.6
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 8.6e-65 250.4 143 74.1
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 8.6e-65 250.4 137 76.6
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 1.1e-64 250.0 133 81.2
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.5e-64 249.6 134 79.9
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 1.5e-64 249.6 134 80.6
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 2.5e-64 248.8 135 78.5
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 3.3e-64 248.4 134 79.1
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 3.3e-64 248.4 136 77.2
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 4.3e-64 248.1 135 77.8
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 5.6e-64 247.7 135 78.5
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 7.3e-64 247.3 137 77.4
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.2e-63 246.5 135 77.0
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.2e-63 246.5 135 74.8
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.2e-63 246.5 127 81.9
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 1.6e-63 246.1 135 79.3
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 1.6e-63 246.1 134 75.4
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 2.8e-63 245.4 137 75.2
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 3.6e-63 245.0 137 73.7
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.7e-63 244.6 137 75.2
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 4.7e-63 244.6 136 75.0
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 4.7e-63 244.6 136 76.5
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 6.2e-63 244.2 128 82.8
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 6.2e-63 244.2 142 74.6
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 6.2e-63 244.2 133 75.9
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 8.1e-63 243.8 135 76.3
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 1.1e-62 243.4 136 73.5
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.4e-62 243.0 145 73.8
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 1.8e-62 242.7 131 77.1
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 1.8e-62 242.7 136 75.0
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 2.3e-62 242.3 134 77.6
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 3.1e-62 241.9 135 76.3
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 5.2e-62 241.1 134 76.1
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 6.8e-62 240.7 135 74.8
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.2e-61 240.0 137 73.7
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 2.0e-61 239.2 135 74.1
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 2.0e-61 239.2 137 73.7
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 3.4e-61 238.4 127 78.0
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 4.4e-61 238.0 136 73.5
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 7.5e-61 237.3 134 74.6
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 7.5e-61 237.3 136 73.5
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 9.9e-61 236.9 135 73.3
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.7e-60 236.1 135 71.9
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 2.9e-60 235.3 132 74.2
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 3.7e-60 235.0 136 72.8
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 8.3e-60 233.8 134 73.1
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.4e-59 233.0 137 68.6
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.4e-59 233.0 129 75.2
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.4e-59 232.3 137 69.3
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 1.2e-58 229.9 136 72.1
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 1.2e-58 229.9 135 68.1
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.1e-58 229.2 136 69.9
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.7e-58 228.8 137 67.2
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 2.7e-58 228.8 136 72.1
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 3.5e-58 228.4 132 72.0
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 3.5e-58 228.4 135 71.1
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 4.6e-58 228.0 126 75.4
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 1.0e-57 226.9 135 70.4
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.3e-57 226.5 135 71.1
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 2.3e-57 225.7 134 69.4
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 3.9e-57 224.9 134 70.9
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 3.9e-57 224.9 121 80.2
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 5.1e-57 224.6 134 70.9
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 8.6e-57 223.8 131 72.5
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 1.9e-56 222.6 134 68.7
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 2.5e-56 222.2 173 60.7
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 2.5e-56 222.2 120 81.7
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 3.3e-56 221.9 134 67.9
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 5.6e-56 221.1 131 71.0
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 9.5e-56 220.3 134 68.7
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 9.5e-56 220.3 134 68.7
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.2e-55 219.9 133 70.7
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.2e-55 219.9 134 67.9
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 1.2e-55 219.9 128 72.7
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.1e-55 219.2 121 74.4
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 8.1e-55 217.2 134 68.7
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 1.1e-54 216.9 137 67.2
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 3.1e-54 215.3 132 66.7
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 4.0e-54 214.9 133 67.7
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 8.9e-54 213.8 134 65.7
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 1.5e-53 213.0 133 66.9
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.6e-53 212.2 134 66.4
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 3.4e-53 211.8 142 64.8
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 5.8e-53 211.1 134 65.7
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 7.6e-53 210.7 121 72.7
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 1.7e-52 209.5 133 66.2
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 2.2e-52 209.1 125 68.8
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 2.2e-52 209.1 121 74.4
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.9e-52 208.8 125 68.0
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 4.1e-51 204.9 129 68.2
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.2e-50 203.4 121 68.6
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.6e-50 203.0 126 69.0
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 6.0e-50 201.1 134 66.4
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 7.8e-50 200.7 136 63.2
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 1.7e-49 199.5 131 64.9
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 2.3e-49 199.1 129 65.1
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.5e-48 196.4 116 70.7
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.1e-47 192.6 133 61.7
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 1.1e-46 190.3 129 63.6
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.1e-46 190.3 129 64.3
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.4e-46 189.9 137 56.9
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.0e-46 188.3 137 60.6
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.9e-44 182.2 133 60.2
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 6.4e-44 181.0 137 62.0
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 4.2e-43 178.3 133 59.4
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 7.1e-43 177.6 107 69.2
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 9.3e-43 177.2 99 76.8
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 7.8e-42 174.1 101 74.3
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 5.6e-40 167.9 107 73.8
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 2.8e-39 165.6 128 57.8
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.1e-38 162.2 126 59.5
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 4.0e-38 161.8 100 71.0
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 6.9e-38 161.0 132 56.8
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 7.1e-35 151.0 86 73.3
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.8e-33 146.4 74 86.5
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 8.7e-33 144.1 145 45.5
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.2e-29 133.7 72 76.4
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 3.8e-28 128.6 74 78.4
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.5e-24 116.7 112 50.0
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.5e-21 105.1 63 71.4
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.7e-20 103.2 78 57.7
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 1.6e-18 96.7 80 56.2


User provided reference genes

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