Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G073400 Carya illinoinensis HOM05D006674 ORTHO05D007954 1.6e-230 802.7 502 100.0
Dinv28183 Davidia involucrata HOM05D006674 ORTHO05D007954 1.8e-133 480.3 476 71.4
Haze_14280 Corylus avellana HOM05D006674 ORTHO05D007954 2.6e-124 449.9 578 56.7
GSVIVG01030703001 Vitis vinifera HOM05D006674 ORTHO05D007954 8.2e-123 444.9 467 69.2
CSS0023224 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 1.2e-121 441.0 465 71.4
TWI77G1007 Tripterygium wilfordii HOM05D006674 ORTHO05D007954 1.3e-120 437.6 465 63.0
Thecc.04G053800 Theobroma cacao HOM05D006674 ORTHO05D007954 8.5e-120 434.9 472 68.9
Nn4g24371 Nelumbo nucifera HOM05D006674 ORTHO05D007954 1.1e-119 434.5 467 61.9
Duzib133G1445 Durio zibethinus HOM05D006674 ORTHO05D007954 7.2e-119 431.8 470 67.9
Actinidia28801 Actinidia chinensis HOM05D006674 ORTHO05D007954 2.0e-116 423.7 465 60.9
Atru.chr1.1984 Acer truncatum HOM05D006674 ORTHO05D007954 2.6e-116 423.3 466 68.9
Glyma.18G041200 Glycine max HOM05D006674 ORTHO05D007954 4.1e-114 416.0 466 60.3
Potri.004G085200 Populus trichocarpa HOM05D006674 ORTHO05D007954 1.2e-113 414.5 467 66.4
arahy.Tifrunner.gnm1.ann1.M54V7M Arachis hypogaea HOM05D006674 ORTHO05D007954 1.6e-113 414.1 489 58.9
Lj6g0000042 Lotus japonicus HOM05D006674 ORTHO05D007954 1.7e-112 410.6 466 59.4
Sc11g0004590 Simmondsia chinensis HOM05D006674 ORTHO05D007954 2.9e-112 409.8 476 58.0
Glyma.11G215400 Glycine max HOM05D006674 ORTHO05D007954 8.6e-112 408.3 466 59.9
TPR.G24904 Trifolium pratense HOM05D006674 ORTHO05D007954 9.5e-111 404.8 466 58.8
VMungo1383G3322 Vigna mungo HOM05D006674 ORTHO05D007954 1.4e-109 401.0 539 43.4
Phvul.001G229300 Phaseolus vulgaris HOM05D006674 ORTHO05D007954 2.3e-109 400.2 448 60.3
Lalb_Chr15g0084971 Lupinus albus HOM05D006674 ORTHO05D007954 2.0e-108 397.1 466 57.9
vmacro18526 Vaccinium macrocarpon HOM05D006674 ORTHO05D007954 7.5e-108 395.2 478 63.2
Psat5g120320 Pisum sativum HOM05D006674 ORTHO05D007954 1.7e-107 394.0 466 57.5
Cc07_g13280 Coffea canephora HOM05D006674 ORTHO05D007954 2.2e-107 393.7 481 65.3
CsaV3_3G017830 Cucumis sativus L. HOM05D006674 ORTHO05D007954 2.2e-107 393.7 469 65.5
MD17G1268600 Malus domestica HOM05D006674 ORTHO05D007954 8.3e-107 391.7 482 59.3
Eucgr.F02873 Eucalyptus grandis HOM05D006674 ORTHO05D007954 1.8e-106 390.6 468 58.8
Medtr3g065220 Medicago truncatula HOM05D006674 ORTHO05D007954 4.1e-106 389.4 461 59.0
Manes.01G119600 Manihot esculenta HOM05D006674 ORTHO05D007954 1.2e-105 387.9 467 66.0
Gohir.A07G073700 Gossypium hirsutum HOM05D006674 ORTHO05D007954 2.9e-104 383.3 481 62.4
Sed0023155 Sechium edule HOM05D006674 ORTHO05D007954 5.6e-103 379.0 461 65.9
arahy.Tifrunner.gnm1.ann1.V27PH4 Arachis hypogaea HOM05D006674 ORTHO05D007954 9.5e-103 378.3 478 58.2
Aqoxy5G02269 Aquilegia oxysepala HOM05D006674 ORTHO05D007954 2.8e-102 376.7 473 64.1
RcHm_v2.0_Chr3g0491391 Rosa chinensis HOM05D006674 ORTHO05D007954 1.8e-101 374.0 415 63.6
MELO3C031718.2 Cucumis melo HOM05D006674 ORTHO05D007954 4.0e-101 372.9 454 64.1
THA.LOC104805245 Tarenaya hassleriana HOM05D006674 ORTHO05D007954 8.9e-101 371.7 441 65.3
Migut.H02229 Erythranthe guttata HOM05D006674 ORTHO05D007954 2.9e-99 366.7 422 68.2
FvH4_1g30190 Fragaria vesca HOM05D006674 ORTHO05D007954 2.3e-96 357.1 419 62.1
Sabra04G0056300 Salix brachista HOM05D006674 ORTHO05D007954 3.0e-96 356.7 467 62.3
Gorai.001G082800 Gossypium raimondii HOM05D006674 ORTHO05D007954 1.2e-94 351.3 481 60.3
BcaB06g27104 Brassica carinata HOM05D006674 ORTHO05D007954 2.9e-91 340.1 466 53.2
A04p10750 Brassica napus HOM05D006674 ORTHO05D007954 2.9e-91 340.1 477 59.5
Gohir.D07G078400 Gossypium hirsutum HOM05D006674 ORTHO05D007954 3.7e-91 339.7 481 59.3
BcaC02g09589 Brassica carinata HOM05D006674 ORTHO05D007954 1.4e-90 337.8 466 53.0
Thhalv10027712m.g Eutrema salsugineum HOM05D006674 ORTHO05D007954 3.2e-90 336.7 476 53.4
BraA04t16739Z Brassica rapa HOM05D006674 ORTHO05D007954 4.1e-90 336.3 477 59.3
AL7G46330 Arabidopsis lyrata HOM05D006674 ORTHO05D007954 1.6e-89 334.3 467 61.2
Rhsim08G0019400 Rhododendron simsii HOM05D006674 ORTHO05D007954 2.1e-89 334.0 377 65.8
BolC4t26017H Brassica oleracea HOM05D006674 ORTHO05D007954 2.7e-89 333.6 477 59.1
Aa31LG9G17490 Aethionema arabicum HOM05D006674 ORTHO05D007954 6.0e-89 332.4 466 52.1
Sp7g04510 Schrenkiella parvula HOM05D006674 ORTHO05D007954 6.0e-89 332.4 436 54.8
C04p44470 Brassica napus HOM05D006674 ORTHO05D007954 6.6e-88 328.9 478 59.0
Nitab4.5_0001650g0150 Nicotiana tabacum HOM05D006674 ORTHO05D007954 3.3e-87 326.6 489 52.8
Solyc11g011390.3 Solanum lycopersicum HOM05D006674 ORTHO05D007954 9.5e-87 325.1 486 58.4
HanXRQChr09g0259811 Helianthus annuus HOM05D006674 ORTHO05D007954 5.2e-85 319.3 395 65.8
Prupe.3G166300 Prunus persica HOM05D006674 ORTHO05D007954 6.8e-85 318.9 333 65.8
Ciclev10011395m.g Citrus clementina HOM05D006674 ORTHO05D007954 1.7e-83 314.3 463 58.3
Carub.0007s3275 Capsella rubella HOM05D006674 ORTHO05D007954 3.2e-82 310.1 433 61.9
Sopen11g006190 Solanum pennellii HOM05D006674 ORTHO05D007954 9.2e-82 308.5 520 54.0
EL10Ac2g03314 Beta vulgaris HOM05D006674 ORTHO05D007954 5.1e-80 302.8 411 54.0
Nitab4.5_0009806g0010 Nicotiana tabacum HOM05D006674 ORTHO05D007954 5.1e-80 302.8 476 51.1
PGR004G1202 Punica granatum HOM05D006674 ORTHO05D007954 3.6e-78 296.6 405 44.2
FAN26G0259 Fragaria x ananassa HOM05D006674 ORTHO05D007954 1.1e-77 295.0 435 53.1
CDE06G1904 Ceratophyllum demersum HOM05D006674 ORTHO05D007954 3.1e-77 293.5 404 56.4
Lsat_1_v5_gn_1_78040 Lactuca sativa HOM05D006674 ORTHO05D007954 4.4e-76 289.7 440 53.2
Peaxi162Scf00562g00218 Petunia axillaris HOM05D006674 ORTHO05D007954 7.6e-76 288.9 342 61.1
COL.COLO4_13419 Corchorus olitorius HOM05D006674 ORTHO05D007954 1.3e-75 288.1 397 55.9
ECA236G3280 Erigeron canadensis HOM05D006674 ORTHO05D007954 9.2e-74 282.0 387 55.3
DCAR_016695 Daucus carota HOM05D006674 ORTHO05D007954 1.2e-73 281.6 320 64.7
Lj4C259T11 Lonicera japonica HOM05D006674 ORTHO05D007954 9.6e-71 271.9 216 66.7
AUR62042219 Chenopodium quinoa HOM05D006674 ORTHO05D007954 2.4e-66 257.3 409 40.3
QL02p059277 Quercus lobata HOM05D006674 ORTHO05D007954 3.3e-63 246.9 182 67.0
PGSC0003DMG400013236 Solanum tuberosum HOM05D006674 ORTHO05D007954 3.6e-62 243.4 394 52.3
Ca_17090_v3 Cicer arietinum L. HOM05D006674 ORTHO05D007954 4.9e-59 233.0 204 59.3
ClCG05G010650 Citrullus lanatus HOM05D006674 ORTHO05D007954 4.6e-57 226.5 188 64.9
SGA_v2.0_scaffold108G30962 Striga asiatica HOM05D006674 ORTHO05D007954 4.6e-57 226.5 469 42.4
unitig_27.g24984 Utricularia gibba HOM05D006674 ORTHO05D007954 1.1e-55 221.9 412 46.1
PSO478G0741 Papaver somniferum HOM05D006674 ORTHO05D007954 3.8e-51 206.8 317 63.4
AT5G37590 Arabidopsis thaliana HOM05D006674 ORTHO05D007954 4.9e-51 206.5 436 51.6
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 6.4e-51 206.1 428 34.6
PSO017G4728 Papaver somniferum HOM05D006674 ORTHO05D007954 5.5e-50 203.0 326 62.3
CAN.G222.57 Capsicum annuum HOM05D006674 ORTHO05D007954 1.0e-48 198.7 186 57.5
CARHR215300 Cardamine hirsuta HOM05D006674 ORTHO05D007954 1.3e-48 198.4 203 53.2
ATR0753G123 Amborella trichopoda HOM05D006674 ORTHO05D007954 1.5e-47 194.9 181 55.8
ATR0753G105 Amborella trichopoda HOM05D006674 ORTHO05D007954 3.2e-42 177.2 135 63.0
Os04g0278200 Oryza sativa ssp. japonica HOM05D006674 ORTHO05D007954 1.2e-41 175.3 242 64.5
ClCG05G010660 Citrullus lanatus HOM05D006674 ORTHO05D007954 2.7e-41 174.1 190 54.2
CSS0022976 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 1.7e-35 154.8 99 74.7
HPP92_002281 Vanilla planifolia HOM05D006674 ORTHO05D007954 2.1e-33 147.9 331 55.0
Zm00001eb221050 Zea mays HOM05D006674 ORTHO05D007954 3.1e-29 134.0 120 52.5
Mapoly0177s0018 Marchantia polymorpha HOM05D006674 ORTHO05D007954 6.9e-29 132.9 121 51.2
CAN.G222.56 Capsicum annuum HOM05D006674 ORTHO05D007954 7.7e-28 129.4 182 45.1
FAN26G0614 Fragaria x ananassa HOM05D006674 ORTHO05D007954 4.2e-26 123.6 137 52.6
Pp3c16_20720 Physcomitrium patens HOM05D006674 ORTHO05D007954 2.1e-25 121.3 121 47.1
CBR_g12189 Chara braunii HOM05D000019 ORTHO05D000002 6.7e-24 116.3 100 51.0
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.1e-21 109.0 359 35.1
arahy.Tifrunner.gnm1.ann1.UE2S4S Arachis hypogaea HOM05D006674 ORTHO05D007954 3.5e-20 104.0 130 45.4
arahy.Tifrunner.gnm1.ann1.EIPD4W Arachis hypogaea HOM05D006674 ORTHO05D007954 2.9e-19 100.9 100 55.0
Cpa.g.sc340.5 Carica papaya HOM05D006674 ORTHO05D007954 6.7e-16 89.7 97 53.6
MCO08G049 Micromonas commoda HOM05D006674 ORTHO05D007954 2.2e-14 84.7 70 57.1
Glyma.08G281500 Glycine max HOM05D006674 ORTHO05D007954 1.1e-13 82.4 61 62.3
SalBow1G3838 Salvia bowleyana HOM05D006674 ORTHO05D007954 5.3e-13 80.1 90 51.1
CSS0039398 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 4.5e-12 77.0 48 72.9
SEGI_15610 Sequoiadendron giganteum HOM05D006674 ORTHO05D007954 1.7e-11 75.1 64 59.4
QL02p059301 Quercus lobata HOM05D006674 ORTHO05D012891 5.0e-11 73.6 184 34.2
QL02p059314 Quercus lobata HOM05D006674 ORTHO05D007954 7.2e-10 69.7 60 63.3
Zm00001eb221070 Zea mays HOM05D006674 ORTHO05D007954 4.7e-09 67.0 120 35.8
QL02p059287 Quercus lobata HOM05D006674 ORTHO05D007954 8.0e-09 66.2 36 86.1
Hma1.2p1_1214F.1_g267580 Hydrangea macrophylla HOM05D006674 ORTHO05D007954 2.0e-07 61.6 105 41.0
arahy.Tifrunner.gnm1.ann1.MX1HDN Arachis hypogaea HOM05D006674 ORTHO05D007954 9.7e-07 59.3 42 66.7
arahy.Tifrunner.gnm1.ann1.PS0MXP Arachis hypogaea HOM05D006674 ORTHO05D007954 9.7e-07 59.3 42 66.7
arahy.Tifrunner.gnm1.ann1.ZN5I3T Arachis hypogaea HOM05D000189 ORTHO05D007954 2.2e-06 58.2 59 50.8
CSS0023659 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 3.7e-06 57.4 35 77.1
arahy.Tifrunner.gnm1.ann1.2ASK5S Arachis hypogaea HOM05D000068 ORTHO05D026879 4.8e-06 57.0 57 52.6


User provided reference genes

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