Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 1.3e-192 676.4 387 100.0
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 2.6e-148 529.3 401 77.3
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.1e-146 523.9 409 76.5
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 8.3e-131 471.1 403 66.3
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 1.1e-130 470.7 404 65.8
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 1.2e-126 457.2 407 67.3
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 1.2e-124 450.7 404 64.9
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 1.5e-124 450.3 400 65.0
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 4.4e-124 448.7 401 63.3
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.2e-121 440.7 395 62.5
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 4.6e-121 438.7 395 63.3
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 6.0e-121 438.3 408 59.1
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 7.8e-121 438.0 403 60.0
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.2e-118 430.6 395 62.0
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 1.2e-118 430.6 396 65.7
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 9.8e-116 421.0 395 61.3
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 9.2e-114 414.5 393 63.1
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 9.2e-114 414.5 399 62.7
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.1e-113 413.3 386 59.8
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 2.7e-113 412.9 390 57.9
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 6.0e-113 411.8 404 60.9
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 1.5e-111 407.1 400 57.8
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 1.1e-109 401.0 426 59.4
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.3e-109 399.8 381 57.2
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 4.0e-109 399.1 400 56.5
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 2.9e-107 392.9 395 54.2
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 6.4e-107 391.7 395 58.5
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 1.9e-106 390.2 389 56.8
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 4.1e-106 389.0 405 55.6
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 9.5e-103 377.9 392 56.9
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 9.5e-103 377.9 389 55.0
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 6.8e-101 371.7 398 55.5
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 8.9e-101 371.3 387 57.6
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.2e-100 370.9 434 51.2
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 5.8e-100 368.6 416 59.4
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 7.6e-100 368.2 387 61.2
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 2.4e-98 363.2 396 56.8
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 5.4e-98 362.1 398 56.5
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 9.2e-98 361.3 393 53.7
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 2.7e-97 359.8 412 51.5
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 2.7e-97 359.8 411 57.4
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 6.0e-97 358.6 407 53.6
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 3.9e-96 355.9 387 58.1
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 3.3e-95 352.8 394 57.9
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 7.3e-95 351.7 402 58.0
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 8.1e-94 348.2 398 50.8
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 2.4e-93 346.7 387 56.6
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 5.3e-93 345.5 415 52.8
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 3.4e-92 342.8 392 54.3
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 7.6e-92 341.7 388 51.0
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 6.0e-89 332.0 392 50.5
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 9.6e-87 324.7 397 53.1
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 2.1e-86 323.6 413 48.2
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 3.4e-84 316.2 407 45.7
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 4.5e-84 315.8 395 50.1
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 6.4e-83 312.0 387 50.6
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 1.8e-80 303.9 396 53.0
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 1.8e-77 293.9 395 52.2
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 1.8e-77 293.9 389 53.7
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 7.6e-76 288.5 396 52.8
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 3.5e-73 279.6 390 47.2
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.6e-70 270.8 389 52.2
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.6e-70 270.8 389 52.2
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 4.8e-70 269.2 394 49.5
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 4.5e-68 262.7 388 44.1
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.3e-67 261.2 320 53.8
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 3.0e-64 250.0 321 49.8
Lj2P435T33 Lonicera japonica HOM05D004237 ORTHO05D005002 8.8e-56 221.9 211 61.1
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 4.8e-54 216.1 241 51.0
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.0e-52 210.7 392 39.3
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 1.0e-51 208.4 316 51.3
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.7e-46 191.0 476 33.6
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.2e-46 190.7 319 41.1
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 3.8e-43 179.9 440 32.7
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 2.5e-42 177.2 284 39.1
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 2.7e-41 173.7 145 57.2
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 6.1e-41 172.6 305 38.4
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 2.6e-39 167.2 124 60.5
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 2.2e-38 164.1 147 52.4
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 8.2e-38 162.2 183 57.9
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.4e-37 161.4 121 61.2
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 5.3e-37 159.5 145 52.4
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 7.0e-37 159.1 145 53.8
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 9.1e-37 158.7 123 59.3
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 2.0e-36 157.5 147 51.0
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 4.5e-36 156.4 122 58.2
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 4.5e-36 156.4 146 51.4
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 5.9e-36 156.0 120 59.2
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 7.7e-36 155.6 145 53.1
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 7.7e-36 155.6 120 59.2
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 7.7e-36 155.6 120 59.2
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 1.0e-35 155.2 146 52.7
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 1.0e-35 155.2 121 58.7
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 1.0e-35 155.2 156 48.7
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 1.0e-35 155.2 115 59.1
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 1.7e-35 154.5 124 58.1
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.7e-35 154.5 123 57.7
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 1.7e-35 154.5 151 51.0
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 1.7e-35 154.5 139 54.0
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 2.2e-35 154.1 145 51.7
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 2.2e-35 154.1 125 56.8
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 2.2e-35 154.1 153 49.7
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 3.8e-35 153.3 122 56.6
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 3.8e-35 153.3 120 57.5
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 5.0e-35 152.9 157 48.4
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 6.5e-35 152.5 146 50.7
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 6.5e-35 152.5 146 50.7
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 6.5e-35 152.5 128 52.3
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 8.5e-35 152.1 125 55.2
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.1e-34 151.8 145 50.3
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 1.1e-34 151.8 120 57.5
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 1.1e-34 151.8 144 52.1
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 1.5e-34 151.4 130 53.8
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 1.9e-34 151.0 119 56.3
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 1.9e-34 151.0 153 49.0
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 2.5e-34 150.6 119 58.0
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 2.5e-34 150.6 120 57.5
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 2.5e-34 150.6 123 57.7
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 3.2e-34 150.2 115 58.3
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.2e-34 150.2 125 56.8
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 3.2e-34 150.2 121 55.4
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 3.2e-34 150.2 121 55.4
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 4.2e-34 149.8 174 46.6
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 4.2e-34 149.8 121 55.4
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 4.2e-34 149.8 131 54.2
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 9.4e-34 148.7 174 46.0
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 1.6e-33 147.9 124 55.6
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.1e-33 147.5 174 46.0
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 2.1e-33 147.5 431 31.8
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 2.7e-33 147.1 151 49.0
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 8.0e-33 145.6 121 52.1
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.0e-32 145.2 397 32.0
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 1.8e-32 144.4 156 46.2
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.3e-32 144.1 307 36.5
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 5.2e-32 142.9 96 69.8
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 1.5e-31 141.4 437 29.7
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 2.0e-31 141.0 384 32.0
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 4.4e-31 139.8 100 64.0
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 5.7e-31 139.4 150 45.3
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 7.5e-31 139.0 444 29.7
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 9.7e-31 138.7 429 29.6
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 1.8e-29 134.4 436 29.6
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 1.8e-29 134.4 436 29.6
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 3.1e-29 133.7 435 29.7
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.1e-29 133.3 427 28.3
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 7.0e-29 132.5 389 35.2
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.2e-28 131.7 99 58.6
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 1.3e-27 128.3 424 27.6
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 2.2e-27 127.5 102 56.9
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 2.9e-27 127.1 426 28.2
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 3.8e-27 126.7 408 31.1
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 5.0e-27 126.3 101 56.4
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.1e-26 125.2 102 56.9
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.1e-26 125.2 102 56.9
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 3.2e-26 123.6 434 27.9
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 9.8e-23 112.1 380 28.9
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.7e-22 111.3 484 26.0
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.1e-21 108.6 401 29.4
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 6.8e-16 89.4 168 33.3
Peaxi162Scf00013g03225 Petunia axillaris HOM05D004237 ORTHO05D005002 4.3e-10 70.1 43 76.7
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 1.7e-06 58.2 71 42.3


User provided reference genes

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