Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 4.7e-152 541.2 280 100.0
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 1.3e-120 436.8 264 87.1
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 2.6e-118 429.1 259 84.6
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 1.0e-114 417.2 282 77.7
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 1.3e-114 416.8 264 81.4
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 1.5e-113 413.3 267 80.5
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 3.3e-113 412.1 267 82.0
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 9.6e-113 410.6 267 81.3
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 2.1e-112 409.5 263 79.5
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 2.8e-112 409.1 262 79.8
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 4.8e-112 408.3 268 78.7
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 8.1e-112 407.5 265 80.0
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 1.8e-111 406.4 268 77.6
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 2.4e-111 406.0 263 80.2
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 5.3e-111 404.8 265 80.0
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 5.3e-111 404.8 265 80.0
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 6.9e-111 404.4 286 74.8
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 1.5e-110 403.3 265 77.0
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 3.4e-110 402.1 265 79.2
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 4.5e-110 401.7 277 75.8
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 5.8e-110 401.4 261 79.3
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.2e-109 399.4 267 77.9
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 8.4e-109 397.5 263 77.9
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 1.4e-108 396.7 264 76.5
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 1.4e-108 396.7 279 73.1
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 9.3e-108 394.0 261 75.9
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 2.7e-107 392.5 259 78.0
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.8e-106 389.8 265 77.0
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 2.3e-106 389.4 270 75.9
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 3.0e-106 389.0 281 73.0
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 3.9e-106 388.7 284 73.6
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 6.7e-106 387.9 270 75.6
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 1.1e-105 387.1 261 76.2
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.9e-105 386.3 261 75.9
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 3.3e-105 385.6 263 74.9
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 3.3e-105 385.6 258 76.7
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 5.7e-105 384.8 259 76.1
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 5.7e-105 384.8 264 75.8
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 9.6e-105 384.0 263 73.8
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 1.6e-104 383.3 263 74.9
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.1e-104 382.9 262 76.0
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 4.8e-104 381.7 267 74.5
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 6.2e-104 381.3 262 75.2
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 1.4e-103 380.2 258 76.0
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 1.8e-103 379.8 259 76.1
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 2.4e-103 379.4 267 71.9
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 5.3e-103 378.3 285 70.5
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 6.9e-103 377.9 262 74.0
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.2e-102 377.1 264 74.2
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 1.5e-102 376.7 271 71.2
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 1.5e-102 376.7 233 80.7
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 2.0e-102 376.3 265 74.3
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 2.6e-102 375.9 261 72.4
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 7.6e-102 374.4 261 74.7
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 7.6e-102 374.4 261 72.4
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.0e-101 374.0 261 72.8
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.3e-101 373.6 259 73.4
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 1.3e-101 373.6 298 65.1
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 1.7e-101 373.2 298 65.4
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 3.8e-101 372.1 265 73.6
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 4.9e-101 371.7 273 71.4
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 8.4e-101 370.9 298 65.1
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 8.4e-101 370.9 298 65.1
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.1e-100 370.5 268 72.0
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 1.1e-100 370.5 274 69.7
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 2.5e-100 369.4 298 65.1
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 3.2e-100 369.0 270 71.1
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 5.5e-100 368.2 259 72.2
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 7.1e-100 367.9 263 71.5
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 2.7e-99 365.9 263 71.9
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 3.5e-99 365.5 236 78.4
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 4.6e-99 365.2 293 65.2
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 2.3e-98 362.8 267 71.9
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 1.9e-97 359.8 294 63.9
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 7.4e-97 357.8 271 71.2
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 3.7e-96 355.5 273 70.7
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 6.3e-96 354.8 269 69.1
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 1.1e-95 354.0 258 69.8
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 1.4e-95 353.6 263 70.7
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 2.0e-94 349.7 286 67.5
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 7.7e-94 347.8 233 73.8
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 5.0e-93 345.1 258 68.6
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 8.5e-93 344.4 260 66.9
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 2.1e-91 339.7 207 84.1
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 2.7e-91 339.3 259 68.0
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 3.6e-91 339.0 334 58.4
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 5.1e-90 335.1 263 66.2
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 7.4e-89 331.3 198 85.9
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 2.2e-88 329.7 186 87.1
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.8e-88 329.3 262 66.8
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 4.8e-88 328.6 265 68.7
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 6.3e-88 328.2 267 67.0
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 2.0e-86 323.2 278 63.3
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.9e-84 316.6 186 83.3
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 4.2e-84 315.5 216 71.3
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 7.9e-83 311.2 249 64.3
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 2.3e-82 309.7 244 65.6
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 1.7e-80 303.5 249 62.2
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 3.7e-80 302.4 237 63.3
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 1.8e-79 300.1 204 76.0
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.5e-78 297.0 286 57.7
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.7e-75 286.2 262 61.5
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 3.6e-75 285.8 204 71.1
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 4.8e-72 275.4 240 59.2
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 2.2e-64 250.0 195 63.6
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 9.1e-63 244.6 235 57.9
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 5.7e-57 225.3 241 51.0
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 8.0e-51 204.9 228 51.3
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.8e-50 203.8 142 73.2
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 5.4e-47 192.2 243 45.7
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 5.0e-45 185.7 148 66.9
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 3.2e-39 166.4 198 46.5
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.5e-36 157.5 176 48.9
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.2e-30 137.9 109 69.7
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 2.7e-30 136.7 225 35.1
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 2.9e-24 116.7 74 75.7
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 6.4e-24 115.5 79 70.9
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 3.0e-21 106.7 77 70.1
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 2.4e-18 97.1 94 59.6
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.2e-17 94.7 122 45.9
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 3.4e-17 93.2 216 31.5
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 1.6e-11 74.3 50 76.0
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 5.3e-10 69.3 91 46.2
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 9.9e-09 65.1 72 50.0
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 9.9e-09 65.1 47 68.1
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 3.2e-07 60.1 89 37.1
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 7.1e-07 58.9 125 28.8
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 9.3e-07 58.5 125 28.0
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 1.6e-06 57.8 88 37.5
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 2.1e-06 57.4 191 28.8
A06p45100 Brassica napus HOM05D003894 ORTHO05D004584 2.7e-06 57.0 88 37.5
BraA06t27379Z Brassica rapa HOM05D003894 ORTHO05D004584 2.7e-06 57.0 88 37.5
BolC7t43649H Brassica oleracea HOM05D003894 ORTHO05D004584 3.5e-06 56.6 88 37.5
Gorai.004G197200 Gossypium raimondii HOM05D003894 ORTHO05D004584 3.5e-06 56.6 140 27.1
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 3.5e-06 56.6 88 37.5
Thhalv10000960m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 4.6e-06 56.2 88 37.5
Aa31sc265G50 Aethionema arabicum HOM05D003894 ORTHO05D004584 6.0e-06 55.8 88 36.4
Cre10.g430450 Chlamydomonas reinhardtii HOM05D003894 ORTHO05D004584 6.0e-06 55.8 103 33.0
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 6.0e-06 55.8 172 25.0
Medtr5g012850 Medicago truncatula HOM05D003894 ORTHO05D004584 6.0e-06 55.8 88 37.5
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 6.0e-06 55.8 74 40.5
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 7.9e-06 55.5 75 38.7
FvH4_5g19130 Fragaria vesca HOM05D003894 ORTHO05D004584 7.9e-06 55.5 123 28.5
FAN08G0890 Fragaria x ananassa HOM05D003894 ORTHO05D004584 7.9e-06 55.5 123 28.5
Lalb_Chr05g0214381 Lupinus albus HOM05D003894 ORTHO05D004584 7.9e-06 55.5 125 27.2
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 7.9e-06 55.5 123 27.6
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 7.9e-06 55.5 123 28.5
VMungo0251G1668 Vigna mungo HOM05D003894 ORTHO05D004584 7.9e-06 55.5 123 27.6


User provided reference genes

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