Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.0e-159 565.8 316 100.0
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.2e-111 407.1 304 72.0
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 4.6e-111 405.2 282 76.6
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 2.7e-95 352.8 282 67.4
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 2.3e-94 349.7 282 66.0
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 8.6e-94 347.8 285 64.2
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.8e-91 340.1 287 63.1
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.2e-90 337.4 284 65.8
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 2.4e-88 329.7 280 65.0
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.1e-87 326.6 321 57.9
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.1e-87 326.6 321 57.9
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.0e-86 324.3 284 62.7
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 2.5e-85 319.7 285 62.5
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 7.3e-85 318.2 297 60.3
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 1.8e-83 313.5 288 60.4
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 6.9e-83 311.6 290 60.0
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 9.0e-83 311.2 287 61.3
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 9.0e-83 311.2 288 60.4
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 2.6e-82 309.7 287 60.6
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 2.7e-79 299.7 288 59.7
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 3.5e-79 299.3 290 57.9
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.8e-79 298.1 283 58.3
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 7.8e-79 298.1 283 58.3
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 1.3e-78 297.4 284 56.7
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.3e-78 296.6 298 55.4
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.0e-78 296.2 283 59.0
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.9e-78 295.8 279 58.4
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 5.1e-78 295.4 321 53.3
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 6.6e-78 295.0 293 58.4
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 1.1e-77 294.3 234 66.7
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.6e-76 290.4 324 62.0
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 2.1e-76 290.0 287 57.1
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 2.1e-76 290.0 290 56.6
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 8.1e-76 288.1 280 58.9
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 8.1e-76 288.1 282 58.9
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 1.4e-75 287.3 295 56.3
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 3.1e-75 286.2 272 57.0
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 4.0e-75 285.8 281 56.6
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 4.0e-75 285.8 280 58.6
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 4.0e-75 285.8 280 58.6
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 6.9e-75 285.0 280 58.2
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.9e-75 285.0 280 58.2
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 9.9e-74 281.2 295 55.6
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 9.9e-74 281.2 284 57.4
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 2.2e-73 280.0 281 57.3
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.4e-72 277.3 297 55.6
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 4.2e-72 275.8 286 55.9
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 1.6e-71 273.9 285 56.5
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.7e-71 273.1 284 55.6
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 4.6e-71 272.3 285 56.1
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 4.6e-71 272.3 285 56.8
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 6.0e-71 271.9 286 53.5
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 1.3e-70 270.8 302 55.0
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 1.8e-70 270.4 290 54.8
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 3.0e-70 269.6 247 60.3
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 8.7e-70 268.1 277 55.6
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.1e-69 267.7 285 54.7
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 2.5e-69 266.5 289 55.0
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 3.3e-69 266.2 338 50.0
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 3.3e-69 266.2 268 59.0
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 7.4e-69 265.0 292 55.8
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 2.1e-68 263.5 335 56.1
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 4.8e-68 262.3 286 53.8
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 1.1e-67 261.2 287 54.4
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 1.4e-67 260.8 287 54.4
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 3.1e-67 259.6 290 54.8
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 4.0e-67 259.2 296 53.7
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 9.0e-67 258.1 285 53.7
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 9.0e-67 258.1 285 53.7
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.5e-66 257.3 282 54.6
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.5e-66 257.3 283 56.5
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 3.4e-66 256.1 339 55.8
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 5.8e-66 255.4 284 52.1
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 5.8e-66 255.4 282 54.3
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 1.0e-65 254.6 282 55.0
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 1.3e-65 254.2 304 52.0
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 1.3e-65 254.2 295 53.2
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 2.2e-65 253.4 283 54.8
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 2.9e-65 253.1 285 54.4
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.1e-64 251.1 282 52.8
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.9e-64 250.4 291 52.2
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 1.9e-64 250.4 293 53.2
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 9.3e-64 248.1 281 53.0
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 9.3e-64 248.1 308 52.6
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 2.1e-63 246.9 285 52.6
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 2.1e-63 246.9 295 51.5
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 3.5e-63 246.1 288 52.4
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 4.6e-63 245.7 327 53.8
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 7.9e-63 245.0 283 52.7
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.0e-62 244.6 309 49.2
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.3e-62 244.2 220 60.5
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 1.3e-62 244.2 291 51.9
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.8e-62 243.8 284 51.8
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 8.7e-62 241.5 302 50.3
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 8.7e-62 241.5 272 54.8
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 1.5e-61 240.7 257 54.9
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.5e-61 240.0 306 51.0
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 5.7e-61 238.8 283 50.9
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 1.3e-60 237.7 287 51.2
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.3e-60 237.7 282 51.1
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 1.6e-60 237.3 277 51.6
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.1e-60 236.9 215 60.5
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.8e-60 236.5 215 60.5
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 6.2e-60 235.3 284 50.4
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 6.2e-60 235.3 284 50.7
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 6.2e-60 235.3 280 48.9
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 3.1e-59 233.0 293 50.5
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 6.9e-59 231.9 283 49.8
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 9.0e-59 231.5 293 49.8
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 4.5e-58 229.2 288 48.6
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 5.8e-58 228.8 289 50.2
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.3e-57 227.6 288 48.6
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.7e-57 227.3 289 48.8
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.2e-57 226.9 290 49.7
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 5.0e-57 225.7 261 52.9
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 1.1e-56 224.6 288 50.3
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.5e-56 223.4 281 50.2
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 3.2e-56 223.0 280 47.9
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.6e-55 220.7 290 47.9
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 6.1e-55 218.8 287 49.1
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.3e-54 216.9 280 47.9
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 2.3e-54 216.9 286 47.9
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.9e-54 216.1 168 64.9
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 6.7e-54 215.3 277 49.1
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 8.7e-54 214.9 283 49.5
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.1e-53 214.5 288 50.0
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 9.7e-53 211.5 160 65.0
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 9.7e-53 211.5 205 58.5
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 1.3e-52 211.1 291 47.8
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.9e-49 199.9 255 48.2
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 8.5e-49 198.4 277 47.3
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 4.2e-48 196.1 284 44.4
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 5.5e-48 195.7 273 44.0
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.0e-46 191.4 165 60.0
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.9e-46 189.5 255 48.6
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 5.1e-46 189.1 123 74.0
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.5e-45 187.6 171 58.5
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 4.8e-44 182.6 282 45.0
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 2.6e-42 176.8 279 42.3
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 7.7e-42 175.3 165 55.8
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.2e-41 173.7 180 51.7
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 1.8e-38 164.1 169 55.6
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 8.8e-38 161.8 277 40.4
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 2.0e-37 160.6 267 42.3
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.0e-34 150.6 125 58.4
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 4.5e-34 149.4 122 59.0
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 3.8e-33 146.4 228 44.7
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.2e-31 141.4 137 55.5
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.2e-31 141.4 118 60.2
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 7.4e-29 132.1 297 35.0
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 3.8e-25 119.8 119 47.1
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 2.1e-23 114.0 98 62.2
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 2.7e-23 113.6 77 74.0
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 9.1e-19 98.6 175 37.1
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.8e-17 93.2 125 52.8
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 3.8e-17 93.2 148 48.6
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 2.7e-15 87.0 149 45.0
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 8.0e-15 85.5 123 48.8
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 9.8e-13 78.6 55 63.6
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.1e-11 73.6 90 55.6
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 7.7e-10 68.9 134 37.3
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 7.7e-10 68.9 93 47.3
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.2e-08 62.4 48 62.5


User provided reference genes

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