Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 7.3e-122 440.7 236 100.0
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 3.2e-93 345.5 229 84.3
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 1.2e-92 343.6 238 79.8
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 4.1e-88 328.6 221 81.4
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 5.3e-88 328.2 221 81.4
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 1.2e-84 317.0 222 79.3
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 1.1e-69 267.3 226 71.2
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 6.7e-67 258.1 227 70.9
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 5.7e-66 255.0 228 66.2
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 5.7e-66 255.0 228 66.7
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 1.3e-65 253.8 222 65.8
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 1.7e-65 253.4 222 66.7
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 4.1e-64 248.8 211 69.7
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 1.2e-63 247.3 227 68.3
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 1.7e-62 243.4 229 67.7
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 2.2e-62 243.0 226 66.8
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 3.8e-62 242.3 260 59.6
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 3.2e-61 239.2 250 61.2
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 2.7e-60 236.1 229 65.9
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 4.0e-59 232.3 212 67.5
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 2.0e-58 229.9 224 65.2
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 4.1e-56 222.2 229 62.0
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 2.0e-55 219.9 232 61.2
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 3.5e-55 219.2 222 57.7
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 1.9e-53 213.4 243 60.5
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 2.1e-52 209.9 235 57.0
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.0e-51 205.7 228 60.1
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 8.8e-51 204.5 237 59.1
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 1.2e-50 204.1 255 54.1
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 2.0e-50 203.4 236 59.7
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.3e-49 200.7 219 60.7
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.3e-49 200.7 238 56.7
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 6.3e-49 198.4 226 58.8
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 8.3e-49 198.0 202 59.9
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 8.3e-49 198.0 225 56.4
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 1.1e-48 197.6 187 64.7
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 1.6e-47 193.7 237 57.0
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.7e-47 193.0 228 58.3
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 2.7e-47 193.0 236 56.4
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 6.5e-46 188.3 228 61.4
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 1.9e-45 186.8 220 55.9
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 3.2e-45 186.0 203 58.1
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 5.5e-45 185.3 245 51.0
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 5.5e-45 185.3 230 54.8
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 7.2e-45 184.9 232 53.4
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 1.2e-44 184.1 236 55.5
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 5.2e-43 178.7 206 55.8
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 5.2e-43 178.7 223 54.3
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 6.8e-43 178.3 190 63.7
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 2.6e-42 176.4 238 52.9
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 4.4e-42 175.6 205 57.6
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 9.8e-42 174.5 188 57.4
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 9.8e-42 174.5 188 58.5
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.7e-41 172.6 221 58.8
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 6.3e-41 171.8 241 55.6
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.3e-41 171.8 188 58.0
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 6.3e-41 171.8 226 53.1
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 6.3e-41 171.8 189 62.4
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 7.0e-40 168.3 231 53.2
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 9.1e-40 167.9 245 55.1
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 9.1e-40 167.9 245 55.1
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 4.5e-39 165.6 175 61.1
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 7.7e-39 164.9 247 54.3
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 2.9e-38 162.9 240 51.2
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 5.0e-38 162.2 209 53.6
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 6.6e-38 161.8 183 55.2
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 6.6e-38 161.8 207 57.5
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.1e-37 161.0 209 53.6
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 1.1e-37 161.0 174 59.8
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 2.5e-37 159.8 236 48.7
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 5.6e-37 158.7 205 53.2
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 9.5e-37 157.9 207 51.7
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 9.5e-37 157.9 223 51.6
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 8.9e-35 151.4 230 49.1
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.4e-34 149.1 244 52.5
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 4.4e-34 149.1 241 49.4
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 5.7e-34 148.7 127 68.5
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 2.9e-33 146.4 182 57.1
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 8.3e-33 144.8 211 52.1
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 8.3e-33 144.8 183 57.4
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.6e-31 140.6 239 44.4
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 3.9e-30 136.0 242 43.0
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.5e-29 134.0 174 52.3
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.9e-29 133.7 171 53.8
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 5.6e-29 132.1 251 41.0
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 5.6e-29 132.1 206 51.0
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 9.5e-29 131.3 282 40.1
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 2.1e-28 130.2 251 40.6
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 2.1e-28 130.2 251 40.6
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 2.1e-28 130.2 243 43.2
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 2.8e-28 129.8 241 44.8
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 2.8e-28 129.8 238 42.4
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 8.0e-28 128.3 189 52.4
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 1.0e-27 127.9 255 40.0
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 1.4e-27 127.5 236 41.5
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 4.0e-27 125.9 234 41.5
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.0e-27 125.9 158 57.0
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 4.0e-27 125.9 328 36.9
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 5.2e-27 125.6 192 50.0
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 6.8e-27 125.2 194 46.4
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 3.4e-26 122.9 243 41.6
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 3.4e-26 122.9 252 41.3
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.3e-25 120.9 241 40.2
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 3.7e-25 119.4 122 61.5
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 4.9e-25 119.0 157 52.9
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 8.3e-25 118.2 265 39.6
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 1.1e-24 117.9 271 36.9
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 5.4e-24 115.5 176 49.4
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 7.0e-24 115.2 262 39.3
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 2.0e-23 113.6 222 40.5
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 2.0e-23 113.6 253 37.2
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 2.7e-23 113.2 246 41.5
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 4.6e-23 112.5 248 40.7
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 6.0e-23 112.1 248 37.5
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 1.7e-22 110.5 248 39.5
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.7e-22 110.5 259 38.2
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 3.9e-22 109.4 237 40.9
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 1.5e-21 107.5 187 46.5
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 1.5e-21 107.5 116 59.5
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 3.3e-21 106.3 242 37.6
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 4.3e-21 105.9 185 45.4
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 5.6e-21 105.5 186 44.1
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.6e-20 104.0 233 40.8
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 2.8e-20 103.2 237 39.2
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 1.4e-19 100.9 232 42.2
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 3.1e-19 99.8 249 37.3
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 3.1e-19 99.8 225 42.2
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 5.2e-19 99.0 131 52.7
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 5.2e-19 99.0 106 64.2
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 5.8e-18 95.5 107 57.0
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 7.5e-18 95.1 263 35.0
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 2.9e-17 93.2 198 40.9
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 1.9e-16 90.5 241 37.3
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 9.2e-16 88.2 189 40.2
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 7.8e-15 85.1 194 37.6
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 1.3e-14 84.3 240 36.7
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.3e-14 84.3 305 30.5
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 3.9e-14 82.8 300 30.3
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 1.9e-13 80.5 218 38.1
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 1.2e-12 77.8 136 41.9
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 2.1e-12 77.0 162 40.1
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 2.1e-12 77.0 193 38.3
CAN.G358.61 Capsicum annuum HOM05D004795 ORTHO05D005518 2.3e-11 73.6 95 53.7
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 2.3e-11 73.6 150 40.7
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 3.1e-11 73.2 163 39.9
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 1.2e-10 71.2 163 38.7
Gohir.A07G174000 Gossypium hirsutum HOM05D004795 ORTHO05D005518 5.8e-10 68.9 98 52.0
unitig_748.g8746 Utricularia gibba HOM05D004795 ORTHO05D005518 3.7e-09 66.2 119 41.2
SalBow7G1622 Salvia bowleyana HOM05D004795 ORTHO05D005518 8.4e-09 65.1 125 44.0
SalBow7G4115 Salvia bowleyana HOM05D004795 ORTHO05D005518 8.4e-09 65.1 125 44.0
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 1.6e-07 60.8 87 48.3


User provided reference genes

Program Settings