Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G061500 Carya illinoinensis HOM05D006225 ORTHO05D007676 3.7e-202 708.0 356 100.0
Prupe.2G152900 Prunus persica HOM05D006225 ORTHO05D007676 4.3e-174 614.8 357 84.3
CSS0013578 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 1.1e-169 600.1 359 82.7
CSS0045838 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 2.4e-169 599.0 359 82.5
TWI77G0942 Tripterygium wilfordii HOM05D006225 ORTHO05D007676 3.5e-168 595.1 356 84.3
Atru.chr1.1695 Acer truncatum HOM05D006225 ORTHO05D007676 1.7e-167 592.8 357 83.2
FvH4_7g12860 Fragaria vesca HOM05D006225 ORTHO05D007676 1.7e-167 592.8 358 79.9
FAN06G1752 Fragaria x ananassa HOM05D006225 ORTHO05D007676 1.7e-167 592.8 358 79.9
CANSAT78G2127 Cannabis sativa HOM05D006225 ORTHO05D007676 1.9e-166 589.3 357 80.1
TAR374G0830 Trochodendron aralioides HOM05D006225 ORTHO05D007676 9.5e-166 587.0 359 80.2
Manes.02G068700 Manihot esculenta HOM05D006225 ORTHO05D007676 1.2e-165 586.6 357 81.8
Thecc.04G133700 Theobroma cacao HOM05D006225 ORTHO05D007676 1.2e-165 586.6 356 80.3
FAN03G3320 Fragaria x ananassa HOM05D006225 ORTHO05D007676 2.1e-165 585.9 358 79.3
CsaV3_3G020710 Cucumis sativus L. HOM05D006225 ORTHO05D007676 3.6e-165 585.1 357 80.4
Potri.017G115200 Populus trichocarpa HOM05D006225 ORTHO05D007676 4.7e-165 584.7 359 81.1
Ciclev10012061m.g Citrus clementina HOM05D006225 ORTHO05D007676 2.6e-163 578.9 356 80.3
COL.COLO4_09333 Corchorus olitorius HOM05D006225 ORTHO05D007676 1.3e-162 576.6 356 80.3
MD02G1195600 Malus domestica HOM05D006225 ORTHO05D007676 1.6e-160 569.7 358 80.4
Lj2g0022404 Lotus japonicus HOM05D006225 ORTHO05D007676 2.1e-160 569.3 359 77.4
Gohir.D12G052400 Gossypium hirsutum HOM05D006225 ORTHO05D007676 3.5e-160 568.5 356 79.5
PGR042G1089 Punica granatum HOM05D006225 ORTHO05D007676 1.3e-159 566.6 357 78.2
Sp7g03650 Schrenkiella parvula HOM05D006225 ORTHO05D007676 1.3e-159 566.6 357 77.3
Glyma.13G045900 Glycine max HOM05D006225 ORTHO05D007676 1.7e-159 566.2 360 77.5
Gohir.A12G053700 Gossypium hirsutum HOM05D006225 ORTHO05D007676 1.7e-159 566.2 356 79.2
Gorai.008G055500 Gossypium raimondii HOM05D006225 ORTHO05D007676 1.7e-159 566.2 356 79.2
Eucgr.G01883 Eucalyptus grandis HOM05D006225 ORTHO05D007676 8.6e-159 563.9 356 76.7
Glyma.19G049100 Glycine max HOM05D006225 ORTHO05D007676 3.3e-158 562.0 360 77.2
Thhalv10027811m.g Eutrema salsugineum HOM05D006225 ORTHO05D007676 9.6e-158 560.5 357 77.0
AT5G38380 Arabidopsis thaliana HOM05D006225 ORTHO05D007676 2.1e-157 559.3 350 78.6
Lj4A191G46 Lonicera japonica HOM05D006225 ORTHO05D007676 6.2e-157 557.8 346 82.9
GSVIVG01031021001 Vitis vinifera HOM05D006225 ORTHO05D007676 6.2e-157 557.8 362 78.2
Ca_13730_v3 Cicer arietinum L. HOM05D006225 ORTHO05D007676 8.1e-157 557.4 358 76.0
Sed0021803 Sechium edule HOM05D006225 ORTHO05D007676 1.8e-156 556.2 377 74.3
AL7G52230 Arabidopsis lyrata HOM05D006225 ORTHO05D007676 3.1e-156 555.4 350 77.7
ECA238G0211 Erigeron canadensis HOM05D006225 ORTHO05D007676 5.2e-156 554.7 360 76.4
CARHR214220 Cardamine hirsuta HOM05D006225 ORTHO05D007676 1.2e-155 553.5 357 75.6
Phvul.004G065800 Phaseolus vulgaris HOM05D006225 ORTHO05D007676 1.5e-155 553.1 360 76.4
Psat1g081360 Pisum sativum HOM05D006225 ORTHO05D007676 1.5e-155 553.1 359 75.8
QL02p051369 Quercus lobata HOM05D006225 ORTHO05D007676 3.4e-155 552.0 406 73.4
Medtr6g018620 Medicago truncatula HOM05D006225 ORTHO05D007676 5.8e-155 551.2 358 75.7
Sabra17G0095400 Salix brachista HOM05D006225 ORTHO05D007676 5.8e-155 551.2 359 77.4
THA.LOC104823860 Tarenaya hassleriana HOM05D006225 ORTHO05D007676 5.8e-155 551.2 356 77.0
TPR.G32473 Trifolium pratense HOM05D006225 ORTHO05D007676 2.9e-154 548.9 358 74.3
SGA_v2.0_scaffold33G13506 Striga asiatica HOM05D006225 ORTHO05D007676 3.8e-154 548.5 359 78.0
Aa31LG9G17110 Aethionema arabicum HOM05D006225 ORTHO05D007676 2.4e-153 545.8 355 74.4
BcaB02g08011 Brassica carinata HOM05D006225 ORTHO05D007676 2.4e-153 545.8 358 74.9
C04p45020 Brassica napus HOM05D006225 ORTHO05D007676 9.3e-153 543.9 356 74.2
BolC4t26080H Brassica oleracea HOM05D006225 ORTHO05D007676 9.3e-153 543.9 356 74.2
HanXRQChr14g0438471 Helianthus annuus HOM05D006225 ORTHO05D007676 6.0e-152 541.2 359 74.9
Lalb_Chr06g0174551 Lupinus albus HOM05D006225 ORTHO05D007676 1.3e-151 540.0 410 68.0
Sopen02g030750 Solanum pennellii HOM05D006225 ORTHO05D007676 1.7e-151 539.7 378 73.3
BraA04t16801Z Brassica rapa HOM05D006225 ORTHO05D007676 6.6e-151 537.7 356 73.0
BcaC02g09645 Brassica carinata HOM05D006225 ORTHO05D007676 8.7e-151 537.3 356 73.3
A04p11390 Brassica napus HOM05D006225 ORTHO05D007676 1.1e-150 537.0 355 73.2
Nn4g23886 Nelumbo nucifera HOM05D006225 ORTHO05D007676 3.3e-150 535.4 323 79.9
BcaB06g27198 Brassica carinata HOM05D006225 ORTHO05D007676 7.3e-150 534.3 356 72.8
VMungo0464G1087 Vigna mungo HOM05D006225 ORTHO05D007676 9.6e-150 533.9 369 73.7
Migut.H00218 Erythranthe guttata HOM05D006225 ORTHO05D007676 3.6e-149 531.9 359 74.7
PSO063G1031 Papaver somniferum HOM05D006225 ORTHO05D007676 1.7e-146 523.1 357 71.7
PSO782G1071 Papaver somniferum HOM05D006225 ORTHO05D007676 1.3e-143 513.5 352 71.3
Aqoxy3G03957 Aquilegia oxysepala HOM05D006225 ORTHO05D007676 1.1e-142 510.4 334 74.3
PGSC0003DMG400026393 Solanum tuberosum HOM05D006225 ORTHO05D007676 1.4e-140 503.4 327 76.8
Carub.0007s3769 Capsella rubella HOM05D006225 ORTHO05D007676 6.9e-140 501.1 354 71.2
Cpa.g.sc282.8 Carica papaya HOM05D006225 ORTHO05D007676 3.4e-139 498.8 355 71.8
AUR62023301 Chenopodium quinoa HOM05D006225 ORTHO05D007676 4.5e-139 498.4 362 67.7
Lsat_1_v5_gn_2_79301 Lactuca sativa HOM05D006225 ORTHO05D007676 5.8e-139 498.0 359 70.8
SalBow3G1182 Salvia bowleyana HOM05D006225 ORTHO05D007676 1.0e-135 487.3 368 68.8
Os07g0283200 Oryza sativa ssp. japonica HOM05D006225 ORTHO05D007676 1.3e-130 470.3 349 65.3
Zm00001eb360540 Zea mays HOM05D006225 ORTHO05D007676 4.9e-130 468.4 355 63.9
vmacro05555 Vaccinium macrocarpon HOM05D006225 ORTHO05D007676 4.2e-129 465.3 377 65.3
HPP92_020146 Vanilla planifolia HOM05D006225 ORTHO05D007676 4.6e-128 461.8 359 64.1
Oeu030786.4 Olea europaea HOM05D006225 ORTHO05D007676 2.5e-126 456.1 293 78.8
SEGI_09013 Sequoiadendron giganteum HOM05D006225 ORTHO05D007676 4.3e-126 455.3 347 62.8
ATR1125G113 Amborella trichopoda HOM05D006225 ORTHO05D007676 1.8e-119 433.3 345 63.5
unitig_0.g7 Utricularia gibba HOM05D006225 ORTHO05D007676 3.9e-119 432.2 348 63.2
Nitab4.5_0000659g0030 Nicotiana tabacum HOM05D006225 ORTHO05D007676 5.1e-119 431.8 322 69.6
Nitab4.5_0000912g0210 Nicotiana tabacum HOM05D006225 ORTHO05D007676 8.7e-119 431.0 322 69.9
Cfa007923 Carpinus fangiana HOM05D006225 ORTHO05D010559 4.3e-118 428.7 252 85.3
MELO3C023807.2 Cucumis melo HOM05D006225 ORTHO05D007676 8.2e-117 424.5 427 55.0
FAN10G1546 Fragaria x ananassa HOM05D006225 ORTHO05D007676 9.4e-113 411.0 383 58.5
EL10Ac2g04565 Beta vulgaris HOM05D006225 ORTHO05D007676 7.9e-112 407.9 301 66.1
arahy.Tifrunner.gnm1.ann1.80Z7L9 Arachis hypogaea HOM05D006225 ORTHO05D007676 9.7e-110 401.0 396 56.3
AUR62009001 Chenopodium quinoa HOM05D006225 ORTHO05D007676 4.1e-108 395.6 374 55.9
Rhsim10G0067300 Rhododendron simsii HOM05D006225 ORTHO05D007676 7.7e-107 391.3 362 59.4
ClCG05G011660 Citrullus lanatus HOM05D006225 ORTHO05D007676 1.7e-106 390.2 392 58.7
Sc11g0008330 Simmondsia chinensis HOM05D006225 ORTHO05D007676 9.4e-105 384.4 260 73.1
Haze_14153 Corylus avellana HOM05D006225 ORTHO05D007676 2.0e-102 376.7 345 61.7
arahy.Tifrunner.gnm1.ann1.IRK6TR Arachis hypogaea HOM05D006225 ORTHO05D007676 6.3e-101 371.7 369 57.2
Mapoly0135s0006 Marchantia polymorpha HOM05D006225 ORTHO05D007676 1.7e-90 337.0 341 51.0
Pp3c6_6620 Physcomitrium patens HOM05D006225 ORTHO05D007676 1.7e-85 320.5 320 47.8
Zm00001eb156340 Zea mays HOM05D006225 ORTHO05D007676 7.0e-84 315.1 246 64.6
RcHm_v2.0_Chr1g0351931 Rosa chinensis HOM05D006225 ORTHO05D007676 2.2e-77 293.5 165 81.8
Peaxi162Scf00394g00621 Petunia axillaris HOM05D006225 ORTHO05D007676 6.3e-77 292.0 194 79.4
Actinidia15885 Actinidia chinensis HOM05D006225 ORTHO05D007676 8.3e-77 291.6 167 83.2
FAN06G4019 Fragaria x ananassa HOM05D006225 ORTHO05D007676 2.4e-76 290.0 175 80.0
RcHm_v2.0_Chr1g0351941 Rosa chinensis HOM05D006225 ORTHO05D007676 7.0e-76 288.5 175 80.6
Cc07_g08800 Coffea canephora HOM05D006225 ORTHO05D007676 1.6e-72 277.3 172 77.9
Cc07_g08810 Coffea canephora HOM05D006225 ORTHO05D007676 6.8e-71 271.9 175 81.7
Eucgr.H04974 Eucalyptus grandis HOM05D006225 ORTHO05D007676 1.8e-68 263.8 237 57.4
Hund13715 Selenicereus undatus HOM05D006225 ORTHO05D007676 2.0e-67 260.4 176 69.9
FAN10G1204 Fragaria x ananassa HOM05D006225 ORTHO05D007676 5.0e-66 255.8 173 70.5
Solyc02g086060.4 Solanum lycopersicum HOM05D006225 ORTHO05D007676 6.6e-66 255.4 179 77.1
SMO196G0121 Selaginella moellendorffii HOM05D006225 ORTHO05D007676 1.0e-58 231.5 307 40.4
CDE02G4721 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 1.3e-58 231.1 172 69.2
Solyc02g086070.2 Solanum lycopersicum HOM05D006225 ORTHO05D007676 8.9e-55 218.4 155 69.7
Hma1.2p1_0136F.1_g062270 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 3.7e-53 213.0 123 79.7
Oeu008428.1 Olea europaea HOM05D006225 ORTHO05D007676 2.1e-48 197.2 212 55.7
Peaxi162Scf00394g00622 Petunia axillaris HOM05D006225 ORTHO05D007676 8.9e-47 191.8 108 81.5
MD07G1125200 Malus domestica HOM05D006225 ORTHO05D007676 9.2e-44 181.8 110 76.4
arahy.Tifrunner.gnm1.ann1.PRIQ1K Arachis hypogaea HOM05D006225 ORTHO05D007676 3.0e-42 176.8 134 65.7
arahy.Tifrunner.gnm1.ann1.8IQW6A Arachis hypogaea HOM05D006225 ORTHO05D007676 3.3e-41 173.3 110 71.8
arahy.Tifrunner.gnm1.ann1.RE0KC5 Arachis hypogaea HOM05D006225 ORTHO05D007676 2.0e-38 164.1 139 61.9
HanXRQChr13g0396101 Helianthus annuus HOM05D006225 ORTHO05D007676 4.9e-37 159.5 91 83.5
Mapoly0085s0089 Marchantia polymorpha HOM05D006555 ORTHO05D008376 1.9e-36 157.5 345 30.4
SHI22412 Sapria himalayana HOM05D006225 ORTHO05D007676 5.4e-36 156.0 94 76.6
arahy.Tifrunner.gnm1.ann1.QBFC9G Arachis hypogaea HOM05D006225 ORTHO05D007676 9.3e-36 155.2 124 61.3
CDE02G0503 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 1.0e-34 151.8 100 71.0
arahy.Tifrunner.gnm1.ann1.QHM34M Arachis hypogaea HOM05D006225 ORTHO05D007676 3.3e-33 146.7 147 55.8
arahy.Tifrunner.gnm1.ann1.A87HRQ Arachis hypogaea HOM05D006225 ORTHO05D007676 1.5e-30 137.9 102 66.7
Actinidia36322 Actinidia chinensis HOM05D006225 ORTHO05D007676 1.4e-28 131.3 82 76.8
arahy.Tifrunner.gnm1.ann1.FD2CEU Arachis hypogaea HOM05D006225 ORTHO05D007676 2.4e-28 130.6 102 65.7
arahy.Tifrunner.gnm1.ann1.5T0UVN Arachis hypogaea HOM05D006225 ORTHO05D007676 3.0e-26 123.6 75 73.3
MD07G1125400 Malus domestica HOM05D006225 ORTHO05D007676 8.7e-26 122.1 115 57.4
Eucgr.L03301 Eucalyptus grandis HOM05D006225 ORTHO05D007676 1.9e-25 120.9 79 74.7
CBR_g65298 Chara braunii HOM05D006225 ORTHO05D007676 1.6e-24 117.9 121 43.8
Hma1.2p1_0239F.1_g099920 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 7.6e-22 109.0 63 79.4
CBR_g8910 Chara braunii HOM05D006555 ORTHO05D008376 1.9e-20 104.4 221 31.7
arahy.Tifrunner.gnm1.ann1.GQQ1MZ Arachis hypogaea HOM05D006225 ORTHO05D007676 9.3e-20 102.1 73 69.9
arahy.Tifrunner.gnm1.ann1.LDE0EK Arachis hypogaea HOM05D006555 ORTHO05D008376 8.1e-16 89.0 258 25.6
Lalb_Chr04g0258611 Lupinus albus HOM05D006555 ORTHO05D008376 4.0e-15 86.7 342 24.0
TWI56G0535 Tripterygium wilfordii HOM05D006555 ORTHO05D008376 2.6e-14 84.0 295 27.1
HanXRQChr15g0474321 Helianthus annuus HOM05D006555 ORTHO05D008376 8.4e-13 79.0 252 26.2
MBI14_g15702_MAGBIO Magnolia biondii HOM05D006555 ORTHO05D008376 8.4e-13 79.0 306 25.2
EL10Ac3g05120 Beta vulgaris HOM05D006555 ORTHO05D008376 1.1e-12 78.6 318 24.2
TPR.G27718 Trifolium pratense HOM05D006555 ORTHO05D008376 1.9e-12 77.8 339 22.1
Sc20g0004830 Simmondsia chinensis HOM05D006555 ORTHO05D008376 4.2e-12 76.6 248 26.6
Manes.17G119457 Manihot esculenta HOM05D006555 ORTHO05D008376 5.5e-12 76.3 242 25.6
Lsat_1_v5_gn_0_24261 Lactuca sativa HOM05D006555 ORTHO05D008376 1.2e-11 75.1 310 24.5
Duzib187G0608 Durio zibethinus HOM05D006555 ORTHO05D008376 3.5e-11 73.6 260 25.4
Glyma.08G102000 Glycine max HOM05D006555 ORTHO05D008376 1.3e-10 71.6 266 25.2
Sabra05G0090500 Salix brachista HOM05D006555 ORTHO05D008376 2.3e-10 70.9 243 26.7
Potri.005G110300 Populus trichocarpa HOM05D006555 ORTHO05D008376 5.1e-10 69.7 247 25.9
VMungo0251G3141 Vigna mungo HOM05D006555 ORTHO05D008376 6.7e-10 69.3 264 25.0
BcaC04g24063 Brassica carinata HOM05D006225 ORTHO05D007676 1.9e-09 67.8 57 57.9
Duzib147G0944 Durio zibethinus HOM05D006555 ORTHO05D008376 5.7e-09 66.2 305 24.9
Phvul.002G176300 Phaseolus vulgaris HOM05D006555 ORTHO05D008376 1.3e-08 65.1 266 23.3
SEGI_26593 Sequoiadendron giganteum HOM05D006555 ORTHO05D008376 2.1e-08 64.3 151 28.5
ECA246G4860 Erigeron canadensis HOM05D006555 ORTHO05D008376 4.8e-08 63.2 234 24.8


User provided reference genes

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