Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G057000 Carya illinoinensis HOM05D003418 ORTHO05D004105 4.9e-64 247.7 128 100.0
Cfa007215 Carpinus fangiana HOM05D003418 ORTHO05D004105 1.5e-36 156.4 126 67.5
Haze_14888 Corylus avellana HOM05D003418 ORTHO05D004105 1.1e-34 150.2 127 64.6
CANSAT64G1003 Cannabis sativa HOM05D003418 ORTHO05D004105 2.4e-26 122.5 150 53.3
TAR374G1678 Trochodendron aralioides HOM05D003418 ORTHO05D004105 7.0e-26 120.9 129 54.3
SalBow7G0626 Salvia bowleyana HOM05D003418 ORTHO05D004105 3.5e-25 118.6 125 56.0
TAR629G2062 Trochodendron aralioides HOM05D003418 ORTHO05D004105 3.5e-25 118.6 119 58.0
Nn3g16424 Nelumbo nucifera HOM05D003418 ORTHO05D004105 5.0e-24 114.8 129 53.5
Rhsim08G0042100 Rhododendron simsii HOM05D003418 ORTHO05D004105 5.5e-23 111.3 119 57.1
AUR62017773 Chenopodium quinoa HOM05D003418 ORTHO05D004105 1.2e-22 110.2 123 52.8
CANSAT01G2188 Cannabis sativa HOM05D003418 ORTHO05D004105 2.1e-22 109.4 129 53.5
Haze_12439 Corylus avellana HOM05D003418 ORTHO05D004105 2.1e-22 109.4 120 54.2
Cc07_g00970 Coffea canephora HOM05D003418 ORTHO05D004105 2.7e-22 109.0 110 56.4
SalBow4G0150 Salvia bowleyana HOM05D003418 ORTHO05D004105 6.1e-22 107.8 119 52.9
Dinv11681 Davidia involucrata HOM05D003418 ORTHO05D004105 1.0e-21 107.1 135 50.4
FAN17G2596 Fragaria x ananassa HOM05D003418 ORTHO05D004105 1.8e-21 106.3 123 53.7
Actinidia04435 Actinidia chinensis HOM05D003418 ORTHO05D004105 2.3e-21 105.9 111 56.8
Prupe.1G223700 Prunus persica HOM05D003418 ORTHO05D004105 2.3e-21 105.9 119 56.3
CsaV3_4G002780 Cucumis sativus L. HOM05D003418 ORTHO05D004105 3.0e-21 105.5 119 52.1
Dinv17578 Davidia involucrata HOM05D003418 ORTHO05D004105 3.0e-21 105.5 133 49.6
Manes.13G009900 Manihot esculenta HOM05D003418 ORTHO05D004105 5.2e-21 104.8 128 50.0
Hma1.2p1_0275F.1_g110610 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 8.8e-21 104.0 117 54.7
TWI36G1005 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 8.8e-21 104.0 126 54.8
CiPaw.06G104400 Carya illinoinensis HOM05D003418 ORTHO05D004105 1.1e-20 103.6 130 48.5
SalBow4G1936 Salvia bowleyana HOM05D003418 ORTHO05D004105 1.5e-20 103.2 119 51.3
THA.LOC104807144 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 1.5e-20 103.2 129 48.1
THA.LOC104809188 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 1.5e-20 103.2 129 48.1
THA.LOC104822793 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 1.5e-20 103.2 129 48.1
MELO3C022314.2 Cucumis melo HOM05D003418 ORTHO05D004105 2.0e-20 102.8 129 48.1
Sc11g0000380 Simmondsia chinensis HOM05D003418 ORTHO05D004105 2.0e-20 102.8 139 45.3
CSS0043963 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 3.3e-20 102.1 114 52.6
CiPaw.05G107800 Carya illinoinensis HOM05D003418 ORTHO05D004105 4.4e-20 101.7 130 49.2
FAN07G2322 Fragaria x ananassa HOM05D003418 ORTHO05D004105 4.4e-20 101.7 122 53.3
Carub.0001s2582 Capsella rubella HOM05D003418 ORTHO05D004105 5.7e-20 101.3 131 48.1
Hma1.2p1_0065F.1_g035230 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 5.7e-20 101.3 120 53.3
Nn4g22281 Nelumbo nucifera HOM05D003418 ORTHO05D004105 7.4e-20 100.9 117 53.0
Nitab4.5_0000067g0190 Nicotiana tabacum HOM05D003418 ORTHO05D004105 7.4e-20 100.9 117 53.8
THA.LOC104825492 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 7.4e-20 100.9 139 45.3
Ca_16446_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 9.7e-20 100.5 124 50.8
CsaV3_6G008230 Cucumis sativus L. HOM05D003418 ORTHO05D004105 9.7e-20 100.5 114 52.6
MBI11_g22683_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 1.3e-19 100.1 113 54.9
MD13G1121400 Malus domestica HOM05D003418 ORTHO05D004105 1.3e-19 100.1 131 46.6
Ciclev10032970m.g Citrus clementina HOM05D003418 ORTHO05D004105 1.7e-19 99.8 111 52.3
Duzib248G1492 Durio zibethinus HOM05D003418 ORTHO05D004105 1.7e-19 99.8 124 48.4
FAN12G4113 Fragaria x ananassa HOM05D003418 ORTHO05D004105 1.7e-19 99.8 120 54.2
THA.LOC104807496 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 1.7e-19 99.8 134 47.0
RcHm_v2.0_Chr4g0429941 Rosa chinensis HOM05D003418 ORTHO05D004105 2.2e-19 99.4 136 46.3
Aa31LG7G9910 Aethionema arabicum HOM05D003418 ORTHO05D004105 3.7e-19 98.6 114 50.0
Cc11_g17090 Coffea canephora HOM05D003418 ORTHO05D004105 3.7e-19 98.6 138 44.9
DCAR_024672 Daucus carota HOM05D003418 ORTHO05D004105 3.7e-19 98.6 111 53.2
FvH4_4g23540 Fragaria vesca HOM05D003418 ORTHO05D004105 3.7e-19 98.6 123 52.8
Phvul.001G263300 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 3.7e-19 98.6 124 50.8
Phvul.L003346 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 3.7e-19 98.6 123 52.8
Duzib251G0418 Durio zibethinus HOM05D003418 ORTHO05D004105 4.8e-19 98.2 126 50.8
Duzib268G0386 Durio zibethinus HOM05D003418 ORTHO05D004105 4.8e-19 98.2 131 48.1
Gohir.D12G153300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 4.8e-19 98.2 130 48.5
MELO3C017764.2 Cucumis melo HOM05D003418 ORTHO05D004105 6.3e-19 97.8 117 51.3
Lsat_1_v5_gn_3_30720 Lactuca sativa HOM05D000660 ORTHO05D000766 6.3e-19 97.8 115 53.0
TPR.G17778 Trifolium pratense HOM05D003418 ORTHO05D004105 6.3e-19 97.8 126 47.6
ClCG07G015190 Citrullus lanatus HOM05D003418 ORTHO05D004105 8.2e-19 97.4 116 51.7
Gohir.A12G149400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 8.2e-19 97.4 130 48.5
Gorai.008G165800 Gossypium raimondii HOM05D003418 ORTHO05D004105 8.2e-19 97.4 130 48.5
Lj6g0011251 Lotus japonicus HOM05D003418 ORTHO05D004105 1.1e-18 97.1 117 51.3
Medtr3g084990 Medicago truncatula HOM05D003418 ORTHO05D004105 1.1e-18 97.1 126 48.4
SGA_v2.0_scaffold253G45188 Striga asiatica HOM05D003418 ORTHO05D004105 1.1e-18 97.1 131 46.6
Glyma.18G004900 Glycine max HOM05D003418 ORTHO05D004105 1.4e-18 96.7 125 49.6
TWI18G0155 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 1.4e-18 96.7 117 55.6
Cpa.g.sc43.80 Carica papaya HOM05D003418 ORTHO05D004105 1.8e-18 96.3 127 45.7
Potri.001G058100 Populus trichocarpa HOM05D003418 ORTHO05D004105 3.1e-18 95.5 130 46.9
Actinidia08059 Actinidia chinensis HOM05D003418 ORTHO05D004105 4.1e-18 95.1 137 48.2
Thhalv10009048m.g Eutrema salsugineum HOM05D003418 ORTHO05D004105 7.0e-18 94.4 119 47.9
Gorai.005G165100 Gossypium raimondii HOM05D003418 ORTHO05D004105 7.0e-18 94.4 130 48.5
arahy.Tifrunner.gnm1.ann1.R9UC9A Arachis hypogaea HOM05D003418 ORTHO05D004105 9.1e-18 94.0 130 51.5
Ciclev10017602m.g Citrus clementina HOM05D003418 ORTHO05D004105 9.1e-18 94.0 107 53.3
Lsat_1_v5_gn_4_781 Lactuca sativa HOM05D003418 ORTHO05D004105 9.1e-18 94.0 129 47.3
Thecc.02G204700 Theobroma cacao HOM05D003418 ORTHO05D004105 9.1e-18 94.0 130 50.8
Migut.K00956 Erythranthe guttata HOM05D003418 ORTHO05D004105 1.2e-17 93.6 128 43.8
Manes.12G009300 Manihot esculenta HOM05D003418 ORTHO05D004105 1.2e-17 93.6 130 46.2
Hund25475 Selenicereus undatus HOM05D003418 ORTHO05D004105 1.2e-17 93.6 118 50.0
AL1G40690 Arabidopsis lyrata HOM05D003418 ORTHO05D004105 1.6e-17 93.2 110 52.7
Potri.003G170300 Populus trichocarpa HOM05D003418 ORTHO05D004105 1.6e-17 93.2 123 47.2
Nitab4.5_0005872g0010 Nicotiana tabacum HOM05D003418 ORTHO05D004105 2.0e-17 92.8 110 49.1
VMungo0251G0083 Vigna mungo HOM05D003418 ORTHO05D004105 2.0e-17 92.8 116 52.6
Glyma.05G148600 Glycine max HOM05D003418 ORTHO05D004105 2.6e-17 92.4 114 52.6
Glyma.11G252200 Glycine max HOM05D003418 ORTHO05D004105 2.6e-17 92.4 112 51.8
Glyma.19G093400 Glycine max HOM05D003418 ORTHO05D004105 2.6e-17 92.4 118 49.2
Aqoxy3G01580 Aquilegia oxysepala HOM05D003418 ORTHO05D004105 3.5e-17 92.0 130 46.2
MSTRG.8015 Avicennia marina HOM05D003418 ORTHO05D004105 3.5e-17 92.0 126 45.2
CAN.G7.14 Capsicum annuum HOM05D003418 ORTHO05D004105 3.5e-17 92.0 125 47.2
MD16G1121700 Malus domestica HOM05D003418 ORTHO05D004105 3.5e-17 92.0 135 45.2
QL03p052131 Quercus lobata HOM05D003418 ORTHO05D004105 3.5e-17 92.0 122 44.3
Gohir.A03G125000 Gossypium hirsutum HOM05D003418 ORTHO05D004105 4.5e-17 91.7 128 45.3
arahy.Tifrunner.gnm1.ann1.V484X6 Arachis hypogaea HOM05D003418 ORTHO05D004105 5.9e-17 91.3 117 53.8
Nitab4.5_0000340g0030 Nicotiana tabacum HOM05D003418 ORTHO05D004105 7.7e-17 90.9 111 50.5
Psat5g098080 Pisum sativum HOM05D003418 ORTHO05D004105 7.7e-17 90.9 124 47.6
PGSC0003DMG400013209 Solanum tuberosum HOM05D003418 ORTHO05D004105 7.7e-17 90.9 120 49.2
AT1G27290 Arabidopsis thaliana HOM05D003418 ORTHO05D004105 1.0e-16 90.5 116 48.3
EL10Ac6g13525 Beta vulgaris HOM05D003418 ORTHO05D004105 1.0e-16 90.5 129 47.3
Lsat_1_v5_gn_2_93281 Lactuca sativa HOM05D003418 ORTHO05D004105 1.0e-16 90.5 120 48.3
MBI07_g11273_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 1.0e-16 90.5 107 52.3
EL10Ac6g15425 Beta vulgaris HOM05D000704 ORTHO05D000526 1.3e-16 90.1 115 49.6
SalBow2G0507 Salvia bowleyana HOM05D003418 ORTHO05D004105 1.3e-16 90.1 109 45.9
unitig_22.g6403 Utricularia gibba HOM05D003418 ORTHO05D003127 1.3e-16 90.1 129 44.2
PGR119G0689 Punica granatum HOM05D003418 ORTHO05D004105 1.7e-16 89.7 128 46.1
Sabra01G0041900 Salix brachista HOM05D003418 ORTHO05D004105 1.7e-16 89.7 118 48.3
SalBow8G1362 Salvia bowleyana HOM05D003418 ORTHO05D004105 1.7e-16 89.7 113 44.2
Sed0008687 Sechium edule HOM05D003418 ORTHO05D004105 1.7e-16 89.7 127 45.7
Actinidia09637 Actinidia chinensis HOM05D003418 ORTHO05D004105 2.2e-16 89.4 118 51.7
CARHR026860 Cardamine hirsuta HOM05D003418 ORTHO05D004105 2.2e-16 89.4 116 46.6
Ca_18018_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 2.9e-16 89.0 117 49.6
Gohir.D02G147400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 2.9e-16 89.0 128 46.1
HanXRQChr06g0174711 Helianthus annuus HOM05D003418 ORTHO05D004105 6.5e-16 87.8 127 49.6
HanXRQChr05g0128721 Helianthus annuus HOM05D003418 ORTHO05D004105 1.1e-15 87.0 122 44.3
Oeu004464.1 Olea europaea HOM05D003418 ORTHO05D004105 1.1e-15 87.0 113 49.6
PGR102G1973 Punica granatum HOM05D003418 ORTHO05D004105 1.1e-15 87.0 120 48.3
A08p26430 Brassica napus HOM05D003418 ORTHO05D004105 1.5e-15 86.7 108 49.1
BolC3t19656H Brassica oleracea HOM05D003418 ORTHO05D004105 1.5e-15 86.7 108 49.1
Lj4g0014081 Lotus japonicus HOM05D003418 ORTHO05D004105 1.5e-15 86.7 128 46.1
Oeu049146.3 Olea europaea HOM05D003418 ORTHO05D004105 1.5e-15 86.7 123 40.7
Solyc05g015710.3 Solanum lycopersicum HOM05D003418 ORTHO05D004105 1.5e-15 86.7 118 46.6
Sopen05g011160 Solanum pennellii HOM05D003418 ORTHO05D004105 1.5e-15 86.7 122 45.1
C03p73650 Brassica napus HOM05D003418 ORTHO05D004105 1.9e-15 86.3 108 49.1
BraA08t34595Z Brassica rapa HOM05D003418 ORTHO05D004105 3.2e-15 85.5 108 48.1
Oeu056671.1 Olea europaea HOM05D003418 ORTHO05D004105 3.2e-15 85.5 115 45.2
PGSC0003DMG401021901 Solanum tuberosum HOM05D003418 ORTHO05D004105 3.2e-15 85.5 122 45.1
BcaB03g14004 Brassica carinata HOM05D003418 ORTHO05D004105 4.2e-15 85.1 116 45.7
BcaB03g12071 Brassica carinata HOM05D003418 ORTHO05D004105 5.5e-15 84.7 111 46.8
Eucgr.H04620 Eucalyptus grandis HOM05D003418 ORTHO05D004105 5.5e-15 84.7 117 47.9
Eucgr.I01636 Eucalyptus grandis HOM05D003418 ORTHO05D004105 5.5e-15 84.7 110 48.2
Medtr8g097040 Medicago truncatula HOM05D003418 ORTHO05D004105 5.5e-15 84.7 129 45.7
TPR.G17100 Trifolium pratense HOM05D003418 ORTHO05D004105 5.5e-15 84.7 114 48.2
ATR0561G224 Amborella trichopoda HOM05D003418 ORTHO05D004105 9.4e-15 84.0 116 47.4
Rhsim12G0093300 Rhododendron simsii HOM05D003418 ORTHO05D004105 9.4e-15 84.0 115 48.7
BcaC05g26544 Brassica carinata HOM05D003418 ORTHO05D004105 1.2e-14 83.6 109 45.9
BolC7t42298H Brassica oleracea HOM05D003418 ORTHO05D004105 1.2e-14 83.6 115 45.2
CSS0019501 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 1.2e-14 83.6 129 45.7
Psat7g077520 Pisum sativum HOM05D003418 ORTHO05D004105 1.2e-14 83.6 127 48.0
Atru.chr11.2346 Acer truncatum HOM05D003418 ORTHO05D004105 1.6e-14 83.2 117 47.0
Medtr7g028805 Medicago truncatula HOM05D003418 ORTHO05D004105 1.6e-14 83.2 123 45.5
Sed0009671 Sechium edule HOM05D003418 ORTHO05D004105 2.1e-14 82.8 105 46.7
CDE02G2290 Ceratophyllum demersum HOM05D003418 ORTHO05D004105 2.7e-14 82.4 137 40.1
Cpa.g.sc171.2 Carica papaya HOM05D003418 ORTHO05D004105 3.6e-14 82.0 133 44.4
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 3.6e-14 82.0 138 39.1
PSO017G5034 Papaver somniferum HOM05D003418 ORTHO05D004105 3.6e-14 82.0 135 42.2
unitig_8.g3133 Utricularia gibba HOM05D003418 ORTHO05D004105 3.6e-14 82.0 118 43.2
BraA07t28984Z Brassica rapa HOM05D003418 ORTHO05D004105 4.7e-14 81.6 115 45.2
SGA_v2.0_scaffold87G27173 Striga asiatica HOM05D003418 ORTHO05D004105 6.1e-14 81.3 117 40.2
C05p25990 Brassica napus HOM05D003418 ORTHO05D004105 8.0e-14 80.9 124 41.9
C07p17920 Brassica napus HOM05D003418 ORTHO05D004105 8.0e-14 80.9 115 44.3
Gohir.D05G311100 Gossypium hirsutum HOM05D003418 ORTHO05D004105 8.0e-14 80.9 109 48.6
SHI04041 Sapria himalayana HOM05D000704 ORTHO05D000526 8.0e-14 80.9 110 53.6
Gorai.009G332100 Gossypium raimondii HOM05D003418 ORTHO05D004105 1.4e-13 80.1 109 48.6
A07p11990 Brassica napus HOM05D003418 ORTHO05D004105 1.8e-13 79.7 115 44.3
PSO478G1430 Papaver somniferum HOM05D003418 ORTHO05D004105 1.8e-13 79.7 135 42.2
Gohir.A05G310300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 2.3e-13 79.3 109 48.6
PSO017G5305 Papaver somniferum HOM05D003418 ORTHO05D004105 8.8e-13 77.4 118 44.1
MSTRG.492 Avicennia marina HOM05D003418 ORTHO05D004105 1.2e-12 77.0 109 40.4
arahy.Tifrunner.gnm1.ann1.V4TZMI Arachis hypogaea HOM05D003418 ORTHO05D004105 1.5e-12 76.6 127 41.7
arahy.Tifrunner.gnm1.ann1.XFVS70 Arachis hypogaea HOM05D003418 ORTHO05D004105 1.5e-12 76.6 127 41.7
Sed0026789 Sechium edule HOM05D003418 ORTHO05D004105 2.0e-12 76.3 108 48.1
HPP92_025259 Vanilla planifolia HOM05D003418 ORTHO05D004105 2.6e-12 75.9 109 44.0
Lj1g0017862 Lotus japonicus HOM05D003418 ORTHO05D004105 3.4e-12 75.5 119 47.1
PSO478G5262 Papaver somniferum HOM05D003418 ORTHO05D004105 4.4e-12 75.1 118 43.2
Gohir.A01G154140 Gossypium hirsutum HOM05D003418 ORTHO05D004105 5.7e-12 74.7 131 42.7
Nitab4.5_0012747g0020 Nicotiana tabacum HOM05D003418 ORTHO05D004105 5.7e-12 74.7 105 48.6
Gorai.002G181900 Gossypium raimondii HOM05D003418 ORTHO05D004105 1.3e-11 73.6 115 47.0
Gohir.D01G146200 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.7e-11 73.2 115 47.0
HanXRQChr07g0198161 Helianthus annuus HOM05D003418 ORTHO05D004105 2.2e-11 72.8 105 45.7
Peaxi162Scf00518g00025 Petunia axillaris HOM05D003418 ORTHO05D004105 2.8e-11 72.4 125 38.4
TPR.G29062 Trifolium pratense HOM05D003418 ORTHO05D004105 3.7e-11 72.0 122 41.0
Migut.K01474 Erythranthe guttata HOM05D003418 ORTHO05D004105 4.8e-11 71.6 103 48.5
Hma1.2p1_1057F.1_g252730 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 4.8e-11 71.6 63 65.1
Thecc.04G039200 Theobroma cacao HOM05D003418 ORTHO05D004105 8.3e-11 70.9 116 44.0
Sopen04g016940 Solanum pennellii HOM05D003418 ORTHO05D004105 1.1e-10 70.5 57 70.2
Lalb_Chr07g0187041 Lupinus albus HOM05D003418 ORTHO05D004105 1.8e-10 69.7 123 40.7
Aqoxy5G03322 Aquilegia oxysepala HOM05D003418 ORTHO05D004105 2.4e-10 69.3 103 45.6
Os09g0507400 Oryza sativa ssp. japonica HOM05D003418 ORTHO05D004105 9.1e-10 67.4 114 41.2
unitig_26.g10403 Utricularia gibba HOM05D003418 ORTHO05D004105 1.2e-09 67.0 125 32.0
Zm00001eb102460 Zea mays HOM05D003418 ORTHO05D004105 1.6e-09 66.6 127 37.8
SGA_v2.0_scaffold391G50621 Striga asiatica HOM05D003418 ORTHO05D004105 3.5e-09 65.5 107 37.4
Lalb_Chr23g0278191 Lupinus albus HOM05D003418 ORTHO05D004105 1.0e-08 63.9 96 43.8
Ah.03g136010 Amaranthus hybridus HOM05D003418 ORTHO05D004105 3.8e-08 62.0 92 45.7
Lalb_Chr12g0206031 Lupinus albus HOM05D003418 ORTHO05D004105 5.0e-08 61.6 102 41.2
unitig_749.g13308 Utricularia gibba HOM05D003418 ORTHO05D004105 5.0e-08 61.6 120 39.2
Zm00001eb364310 Zea mays HOM05D003418 ORTHO05D011080 4.2e-07 58.5 109 40.4


User provided reference genes

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