Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 2245.3 1171 100.0
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 2119.4 1171 94.0
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 2116.3 1172 94.0
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 2112.4 1172 93.8
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 2062.0 1170 90.9
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 2059.3 1168 91.1
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 2050.4 1168 91.0
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 2036.2 1169 90.2
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 2029.6 1167 87.7
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 2029.2 1168 89.1
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 2028.1 1168 87.7
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 2022.3 1169 89.5
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 2020.7 1167 89.8
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 2018.4 1168 89.2
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 2017.7 1168 88.6
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 2016.1 1167 87.2
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 2011.1 1168 87.3
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 2010.0 1167 88.8
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 2008.4 1168 87.8
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 2008.0 1170 89.0
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 2005.3 1168 88.3
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 2004.9 1168 87.7
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 2002.3 1168 87.3
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 2002.3 1172 86.7
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 2000.7 1171 88.9
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1999.6 1168 88.4
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1994.2 1168 87.4
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1993.8 1168 87.8
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1993.8 1167 87.1
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1988.8 1167 88.7
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1988.8 1167 88.8
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1988.4 1168 87.0
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1987.6 1167 88.8
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1987.6 1167 88.7
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1987.6 1169 87.9
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1984.1 1167 88.0
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1981.5 1168 87.4
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1980.7 1168 87.5
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1980.7 1168 86.7
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1980.7 1168 86.7
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1978.4 1168 87.2
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1977.2 1168 87.2
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1973.4 1214 83.9
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1971.4 1199 85.5
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1970.7 1205 85.6
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1970.3 1168 86.3
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1969.9 1168 86.8
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1967.2 1171 86.6
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1967.2 1168 86.0
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1965.7 1170 85.6
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1961.0 1169 86.4
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1960.7 1168 85.5
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1958.7 1168 85.9
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1958.7 1091 89.9
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1958.3 1171 86.7
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1955.3 1179 84.7
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1954.5 1168 86.2
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1953.7 1177 85.3
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1952.6 1167 85.0
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1951.8 1169 87.8
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1943.3 1215 83.9
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1942.5 1180 84.7
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1936.8 1168 85.2
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1935.2 1164 86.6
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1933.7 1169 84.9
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1925.6 1167 85.6
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1925.6 1168 85.8
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1924.1 1167 85.5
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1924.1 1169 85.2
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1918.7 1168 83.8
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 1167 85.3
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 1167 85.3
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1916.4 1173 85.3
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1915.6 1167 85.1
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1915.6 1169 85.4
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1915.2 1168 85.3
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1911.3 1169 83.7
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1910.2 1173 84.9
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1909.8 1167 84.9
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1907.1 1169 84.6
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1906.0 1169 82.1
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1904.0 1171 84.1
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1900.6 1184 84.0
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1882.8 1099 86.4
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1868.2 1133 84.5
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1864.7 1169 83.7
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1855.9 1337 75.3
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1855.1 1173 83.5
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1854.3 1190 83.4
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1807.7 1183 79.2
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1807.0 1168 77.5
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1786.5 1172 77.0
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1748.0 1162 78.2
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1741.9 1169 76.9
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1722.2 1168 76.2
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1659.8 996 85.9
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1650.6 1168 71.3
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1640.6 1169 71.8
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1635.5 1159 76.6
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1632.8 943 88.0
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1506.1 839 91.2
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1477.6 1173 64.8
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1461.8 1168 65.7
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1436.4 839 86.3
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1404.0 1169 62.7
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1394.4 1173 62.3
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1375.5 1186 61.2
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1374.8 799 86.7
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1298.9 798 82.0
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1232.2 789 78.2
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1156.4 696 85.1
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1113.6 927 62.1
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 1.1e-306 1057.0 1198 46.7
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 4.2e-303 1045.0 660 81.4
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 7.4e-292 1007.7 577 90.1
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 8.2e-291 1004.2 743 72.8
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 3.1e-290 1002.3 592 86.8
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.9e-279 966.5 599 84.1
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 3.6e-278 962.2 546 90.1
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 2.0e-265 919.8 627 75.0
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 3.7e-259 899.0 520 84.0
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 2.6e-220 770.0 465 80.6
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 1.1e-218 764.6 483 83.0
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 4.5e-212 742.7 446 89.2
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 7.0e-157 559.3 348 85.9
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 1.5e-151 541.6 358 79.9
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 2.8e-113 414.5 379 57.3
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 2.0e-111 408.3 284 73.9
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 1.8e-91 342.0 195 86.2
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 4.8e-65 254.2 168 82.1
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 1.4e-48 199.5 144 75.7
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 3.6e-44 184.9 117 84.6
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 9.5e-37 160.2 102 86.3
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 6.1e-36 157.5 108 81.5
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 6.8e-35 154.1 87 85.1
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 2.0e-34 152.5 78 93.6
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 1.8e-32 146.0 96 79.2
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 2.8e-20 105.5 161 42.2
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 2.8e-20 105.5 132 46.2
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 2.2e-17 95.9 51 86.3
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 3.7e-17 95.1 84 65.5
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.4e-16 93.2 51 82.4
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.4e-16 92.4 51 84.3
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 3.5e-15 88.6 105 69.5
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 2.2e-09 69.3 338 27.8
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 4.6e-07 61.6 37 73.0


User provided reference genes

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