Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1877.1 950 100.0
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1592.0 950 84.3
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1545.4 956 82.0
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1394.0 957 73.0
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1387.1 957 72.6
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1386.3 957 73.8
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1385.5 958 73.6
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1384.4 956 73.1
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1379.8 957 73.4
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1379.4 957 73.1
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1369.8 957 72.2
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1353.6 951 71.2
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1351.3 956 71.9
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1350.1 986 72.2
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1338.6 957 70.8
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1332.0 960 70.6
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1328.5 956 71.0
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1327.4 956 70.2
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1325.1 957 69.9
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1322.8 958 70.0
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1320.4 1017 66.9
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1318.5 957 69.7
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1317.8 957 70.0
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1306.2 956 69.8
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1304.7 963 68.4
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1295.4 957 68.1
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1294.6 956 69.1
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1291.2 956 68.9
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1288.5 956 68.5
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1283.5 960 68.4
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1281.2 956 67.6
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1278.8 1024 64.7
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1276.5 965 69.0
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1275.8 957 66.9
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1274.6 951 68.1
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1271.5 966 68.6
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1269.2 956 68.1
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1268.4 958 67.2
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1267.3 952 66.0
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1258.4 957 66.4
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1255.0 951 66.1
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1250.7 957 68.0
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1247.6 953 65.6
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1246.9 951 65.9
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1246.9 957 65.2
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1246.9 957 67.8
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1246.5 957 66.8
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1246.1 953 65.5
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1245.0 951 65.9
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1238.0 956 67.3
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1235.3 909 70.7
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1234.9 952 64.9
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1220.7 958 64.4
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1219.1 950 64.1
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1218.4 989 65.1
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1217.2 960 66.1
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1216.1 966 64.3
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1213.7 958 64.0
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1213.0 956 64.1
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1212.6 954 65.3
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1211.1 955 64.3
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1209.9 958 64.4
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1205.7 967 63.2
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1196.0 957 66.5
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1194.1 905 65.5
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1190.6 950 64.0
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1187.6 965 62.9
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1182.9 1026 59.0
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1181.4 951 63.6
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1181.4 952 64.8
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1175.6 956 63.1
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1170.2 1013 59.2
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1170.2 954 62.1
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1166.4 962 62.8
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1162.9 960 63.9
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1160.2 941 62.4
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1149.0 936 63.8
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1149.0 936 63.8
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1142.1 846 69.6
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1138.6 956 60.8
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1128.2 936 62.7
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1119.8 950 61.7
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1119.8 950 61.3
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1119.8 950 61.7
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1117.8 950 61.3
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1117.4 950 61.9
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1117.4 950 61.2
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1113.6 950 61.5
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1107.4 773 72.7
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1107.4 950 60.9
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1098.6 950 60.0
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1094.7 950 60.2
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1092.0 950 60.5
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1087.8 950 59.8
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1083.2 951 60.5
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1082.8 799 68.3
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1075.1 965 59.9
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 3.8e-310 1068.1 967 58.7
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 1.9e-309 1065.8 952 59.1
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 3.2e-309 1065.1 950 59.3
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 9.3e-309 1063.5 958 57.1
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 3.5e-308 1061.6 849 62.3
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 3.9e-307 1058.1 952 58.4
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 1.3e-289 1000.0 960 54.7
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 2.3e-283 979.2 681 71.5
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 2.1e-276 956.1 613 76.7
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 8.5e-270 934.1 988 51.1
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 2.8e-265 919.1 926 53.6
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 3.1e-256 889.0 819 55.7
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 2.2e-246 856.3 596 69.6
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 4.4e-234 815.5 907 50.4
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 6.3e-233 811.6 969 45.9
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 3.1e-227 792.7 887 48.4
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 8.3e-225 784.6 986 45.1
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 2.3e-211 740.0 483 74.9
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.2e-209 733.4 983 43.0
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 4.8e-196 689.1 962 41.5
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 3.6e-127 460.3 331 65.0
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 3.4e-125 453.8 937 34.0
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 5.0e-121 439.9 943 33.4
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 6.6e-97 359.8 232 75.0
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 2.5e-96 357.8 296 58.1
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.7e-90 337.8 231 71.9
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.6e-87 328.6 525 38.9
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.4e-83 315.5 232 68.1
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 2.4e-78 298.1 978 26.0
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 9.9e-77 292.7 377 45.9
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.7e-76 292.0 231 63.2
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 6.4e-68 263.5 211 65.4
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.2e-67 261.2 260 54.6
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.5e-67 260.4 257 55.3
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.7e-58 231.5 214 56.5
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.3e-57 228.4 228 54.4
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 4.8e-47 194.1 160 59.4
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 8.2e-47 193.4 223 48.4
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 8.2e-47 193.4 223 48.4
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 8.2e-47 193.4 223 48.4
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.8e-46 192.2 157 61.8
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.1e-46 191.0 223 48.0
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 6.9e-46 190.3 223 48.0
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.8e-44 184.5 245 43.7
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 3.8e-44 184.5 142 64.8
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.3e-36 159.5 223 43.5
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 3.2e-35 154.8 248 41.1
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 4.2e-35 154.5 248 41.1
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 6.7e-33 147.1 248 39.9
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 1.2e-29 136.3 77 80.5
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 7.7e-29 133.7 130 55.4
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.5e-27 129.4 241 37.3
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 1.9e-27 129.0 237 34.2
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 9.1e-22 110.2 80 66.2
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 7.7e-21 107.1 73 68.5
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 5.0e-20 104.4 58 74.1
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 3.7e-15 88.2 211 29.4
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 8.3e-15 87.0 55 74.5
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 1.2e-08 66.6 163 30.1


User provided reference genes

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