Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G046500 Carya illinoinensis HOM05D007296 ORTHO05D009201 6.8e-69 263.8 131 100.0
CiPaw.04G030100 Carya illinoinensis HOM05D007296 ORTHO05D009201 4.0e-45 184.9 136 72.8
Haze_14767 Corylus avellana HOM05D007296 ORTHO05D009201 3.3e-39 165.2 132 68.2
QL02p073829 Quercus lobata HOM05D007296 ORTHO05D009201 7.3e-39 164.1 129 65.9
Cfa007330 Carpinus fangiana HOM05D007296 ORTHO05D009201 6.2e-38 161.0 127 67.7
TAR371G0818 Trochodendron aralioides HOM05D007296 ORTHO05D009201 3.9e-32 141.7 132 52.3
Hma1.2p1_0818F.1_g223340 Hydrangea macrophylla HOM05D007296 ORTHO05D009201 1.1e-31 140.2 134 56.0
Manes.15G152600 Manihot esculenta HOM05D007296 ORTHO05D009201 6.2e-30 134.4 135 55.6
Ciclev10017118m.g Citrus clementina HOM05D007296 ORTHO05D009201 1.4e-29 133.3 138 55.1
CSS0008661 Camellia sinensis var. sinensis HOM05D007296 ORTHO05D009201 4.0e-29 131.7 141 51.1
Potri.001G342100 Populus trichocarpa HOM05D007296 ORTHO05D009201 1.5e-28 129.8 136 55.1
Duzib187G0331 Durio zibethinus HOM05D007296 ORTHO05D009201 3.4e-28 128.6 124 55.6
Nn3g16657 Nelumbo nucifera HOM05D007296 ORTHO05D009201 1.7e-27 126.3 134 50.0
Atru.chr6.2441 Acer truncatum HOM05D007296 ORTHO05D009201 8.4e-27 124.0 137 55.5
Glyma.16G068200 Glycine max HOM05D007296 ORTHO05D009201 8.4e-27 124.0 115 55.7
Thecc.04G021100 Theobroma cacao HOM05D007296 ORTHO05D009201 1.6e-25 119.8 120 52.5
Medtr7g033080 Medicago truncatula HOM05D007296 ORTHO05D009201 3.5e-25 118.6 124 51.6
Glyma.19G078800 Glycine max HOM05D007296 ORTHO05D009201 4.6e-25 118.2 114 54.4
Lj1g0014101 Lotus japonicus HOM05D007296 ORTHO05D009201 1.3e-24 116.7 118 51.7
Psat3g172000 Pisum sativum HOM05D007296 ORTHO05D009201 1.3e-24 116.7 115 52.2
Ca_06610_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 2.3e-24 115.9 116 53.4
Ca_30727_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 2.3e-24 115.9 116 53.4
TPR.G1088 Trifolium pratense HOM05D007296 ORTHO05D009201 3.0e-24 115.5 107 56.1
Nn4g22550 Nelumbo nucifera HOM05D007296 ORTHO05D009201 3.9e-24 115.2 124 50.0
Lalb_Chr22g0360681 Lupinus albus HOM05D007296 ORTHO05D009201 8.7e-24 114.0 113 52.2
Dinv33417 Davidia involucrata HOM05D007296 ORTHO05D009201 1.5e-23 113.2 127 50.4
Eucgr.I01721 Eucalyptus grandis HOM05D007296 ORTHO05D009201 1.9e-23 112.8 119 58.0
Sabra15G0109100 Salix brachista HOM05D000631 ORTHO05D000524 5.6e-23 111.3 129 45.0
PSO017G3033 Papaver somniferum HOM05D007296 ORTHO05D009201 9.6e-23 110.5 118 50.0
Gohir.A09G030400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 1.6e-22 109.8 139 51.8
Gohir.D09G030000 Gossypium hirsutum HOM05D007296 ORTHO05D009201 2.8e-22 109.0 140 52.1
Cpa.g.sc130.72 Carica papaya HOM05D007296 ORTHO05D009201 3.7e-22 108.6 145 49.0
Phvul.008G151600 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 1.4e-21 106.7 98 53.1
VMungo1383G0878 Vigna mungo HOM05D007296 ORTHO05D009201 1.4e-21 106.7 108 52.8
DCAR_021738 Daucus carota HOM05D000631 ORTHO05D000524 9.0e-21 104.0 135 43.0
MBI10_g42976_MAGBIO Magnolia biondii HOM05D007296 ORTHO05D009201 1.2e-20 103.6 131 47.3
Cc02_g32290 Coffea canephora HOM05D007296 ORTHO05D009201 1.5e-20 103.2 143 44.8
SalBow1G6940 Salvia bowleyana HOM05D007296 ORTHO05D009201 1.5e-20 103.2 109 50.5
Sc16g0004380 Simmondsia chinensis HOM05D007296 ORTHO05D009201 4.5e-20 101.7 133 48.1
TWI56G0033 Tripterygium wilfordii HOM05D007296 ORTHO05D009201 1.0e-19 100.5 135 48.9
Manes.14G057736 Manihot esculenta HOM05D007296 ORTHO05D009201 1.3e-19 100.1 129 45.7
PGR142G0831 Punica granatum HOM05D007296 ORTHO05D009201 4.9e-19 98.2 139 46.8
Prupe.3G295100 Prunus persica HOM05D007296 ORTHO05D009201 4.2e-18 95.1 138 49.3
ClCG09G019420 Citrullus lanatus HOM05D007296 ORTHO05D009201 1.2e-17 93.6 129 43.4
TAR374G0807 Trochodendron aralioides HOM05D007296 ORTHO05D009201 2.1e-17 92.8 111 49.5
Glyma.19G051600 Glycine max HOM05D007296 ORTHO05D009201 2.7e-17 92.4 113 48.7
Prupe.5G162900 Prunus persica HOM05D007296 ORTHO05D009201 3.5e-17 92.0 139 41.0
Aqoxy5G03689 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 4.6e-17 91.7 139 41.0
Glyma.05G115500 Glycine max HOM05D007296 ORTHO05D009201 7.9e-17 90.9 114 48.2
SGA_v2.0_scaffold135G34923 Striga asiatica HOM05D007296 ORTHO05D009201 2.3e-16 89.4 108 48.1
Lsat_1_v5_gn_2_91081 Lactuca sativa HOM05D007296 ORTHO05D009201 3.0e-16 89.0 101 47.5
ATR0199G042 Amborella trichopoda HOM05D007296 ORTHO05D009201 3.9e-16 88.6 115 42.6
SGA_v2.0_scaffold18G08254 Striga asiatica HOM05D007296 ORTHO05D009201 3.9e-16 88.6 114 43.9
Aqoxy7G03797 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 6.7e-16 87.8 109 45.0
Ciclev10022926m.g Citrus clementina HOM05D007296 ORTHO05D009201 6.7e-16 87.8 107 43.9
CsaV3_5G026960 Cucumis sativus L. HOM05D007296 ORTHO05D009201 1.1e-15 87.0 143 40.6
Thecc.03G117800 Theobroma cacao HOM05D007296 ORTHO05D009201 1.1e-15 87.0 121 41.3
Lsat_1_v5_gn_0_6101 Lactuca sativa HOM05D007296 ORTHO05D009201 1.5e-15 86.7 148 41.2
CiPaw.11G015200 Carya illinoinensis HOM05D007296 ORTHO05D009201 1.9e-15 86.3 108 44.4
CAN.G473.34 Capsicum annuum HOM05D007296 ORTHO05D009201 2.5e-15 85.9 127 39.4
MELO3C021597.2 Cucumis melo HOM05D007296 ORTHO05D009201 2.5e-15 85.9 140 41.4
Phvul.004G061700 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 3.3e-15 85.5 112 46.4
DCAR_015066 Daucus carota HOM05D007296 ORTHO05D009201 5.7e-15 84.7 128 39.8
Ca_30679_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 9.6e-15 84.0 111 39.6
Glyma.05G042900 Glycine max HOM05D007296 ORTHO05D009201 1.3e-14 83.6 111 42.3
Sed0024202 Sechium edule HOM05D007296 ORTHO05D009201 1.6e-14 83.2 114 43.0
PGSC0003DMG400012614 Solanum tuberosum HOM05D007296 ORTHO05D009201 2.1e-14 82.8 131 39.7
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 2.1e-14 82.8 123 41.5
FAN02G1968 Fragaria x ananassa HOM05D007296 ORTHO05D009201 8.2e-14 80.9 134 44.8
Gorai.006G035000 Gossypium raimondii HOM05D007296 ORTHO05D009201 8.2e-14 80.9 140 42.9
Ah.12g055220 Amaranthus hybridus HOM05D007296 ORTHO05D009201 1.8e-13 79.7 125 39.2
FvH4_6g51980 Fragaria vesca HOM05D007296 ORTHO05D009201 1.8e-13 79.7 137 43.8
FAN14G0692 Fragaria x ananassa HOM05D007296 ORTHO05D009201 1.8e-13 79.7 137 43.8
Aqoxy3G01286 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 3.1e-13 79.0 112 36.6
Lj4g0005296 Lotus japonicus HOM05D007296 ORTHO05D009201 4.1e-13 78.6 140 36.4
Lalb_Chr07g0183081 Lupinus albus HOM05D007296 ORTHO05D009201 5.3e-13 78.2 133 36.1
CARHR198900 Cardamine hirsuta HOM05D007296 ORTHO05D009201 6.9e-13 77.8 128 45.3
FAN09G0682 Fragaria x ananassa HOM05D007296 ORTHO05D009201 6.9e-13 77.8 134 43.3
Gohir.A07G055400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 9.0e-13 77.4 115 42.6
AL6G25130 Arabidopsis lyrata HOM05D007296 ORTHO05D009201 1.2e-12 77.0 104 51.0
Gohir.D07G059700 Gossypium hirsutum HOM05D007296 ORTHO05D009201 1.2e-12 77.0 115 42.6
Gorai.001G063200 Gossypium raimondii HOM05D007296 ORTHO05D009201 1.2e-12 77.0 115 42.6
AT5G14410 Arabidopsis thaliana HOM05D007296 ORTHO05D009201 1.5e-12 76.6 102 52.9
QL10p006090 Quercus lobata HOM05D007296 ORTHO05D009201 2.0e-12 76.3 122 37.7
SGA_v2.0_scaffold47G17522 Striga asiatica HOM05D000631 ORTHO05D000524 2.0e-12 76.3 70 54.3
Aa31LG11G15190 Aethionema arabicum HOM05D007296 ORTHO05D009201 3.4e-12 75.5 135 43.7
EL10Ac5g12075 Beta vulgaris HOM05D007296 ORTHO05D009201 4.5e-12 75.1 120 38.3
Sp6g29610 Schrenkiella parvula HOM05D007296 ORTHO05D009201 4.5e-12 75.1 134 44.8
Carub.0006s1259 Capsella rubella HOM05D007296 ORTHO05D009201 5.9e-12 74.7 102 51.0
COL.COLO4_30221 Corchorus olitorius HOM05D007296 ORTHO05D009201 7.6e-12 74.3 101 45.5
ECA246G1504 Erigeron canadensis HOM05D007296 ORTHO05D009201 1.0e-11 73.9 108 42.6
Phvul.003G206500 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 1.0e-11 73.9 111 40.5
Migut.H00030 Erythranthe guttata HOM05D007296 ORTHO05D009201 1.3e-11 73.6 66 57.6
Migut.K01416 Erythranthe guttata HOM05D007296 ORTHO05D009201 2.2e-11 72.8 117 43.6
BolC9t59112H Brassica oleracea HOM05D007296 ORTHO05D009201 2.9e-11 72.4 132 44.7
THA.LOC104821171 Tarenaya hassleriana HOM05D007296 ORTHO05D009201 2.9e-11 72.4 126 44.4
C09p62750 Brassica napus HOM05D007296 ORTHO05D009201 3.8e-11 72.0 132 44.7
RcHm_v2.0_Chr2g0173451 Rosa chinensis HOM05D007296 ORTHO05D009201 3.8e-11 72.0 128 42.2
A10p24110 Brassica napus HOM05D007296 ORTHO05D009201 6.5e-11 71.2 132 43.9
BraA10t44476Z Brassica rapa HOM05D007296 ORTHO05D009201 6.5e-11 71.2 132 43.9
Thhalv10014918m.g Eutrema salsugineum HOM05D007296 ORTHO05D009201 6.5e-11 71.2 76 57.9
FAN05G3275 Fragaria x ananassa HOM05D007296 ORTHO05D009201 8.4e-11 70.9 135 38.5
Actinidia33329 Actinidia chinensis HOM05D007296 ORTHO05D009201 7.2e-10 67.8 90 44.4
Sopen02g038130 Solanum pennellii HOM05D007296 ORTHO05D009201 1.2e-09 67.0 134 32.8
BcaB08g36986 Brassica carinata HOM05D007296 ORTHO05D009201 2.1e-09 66.2 82 48.8
SalBow7G1031 Salvia bowleyana HOM05D007296 ORTHO05D009201 4.6e-09 65.1 106 34.9
Solyc02g093525.1 Solanum lycopersicum HOM05D007296 ORTHO05D009201 4.6e-09 65.1 115 38.3
Rhsim08G0048000 Rhododendron simsii HOM05D007296 ORTHO05D009201 3.0e-08 62.4 68 50.0
VMungo1215G1852 Vigna mungo HOM05D007296 ORTHO05D009201 8.7e-08 60.8 102 37.3
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 9.7e-07 57.4 59 47.5
Os01g0938400 Oryza sativa ssp. japonica HOM05D024678 ORTHO05D025976 2.2e-06 56.2 77 44.2
Atru.chr9.2613 Acer truncatum HOM05D007296 ORTHO05D009201 4.8e-06 55.1 71 45.1
QL10p006100 Quercus lobata HOM05D007296 ORTHO05D009201 6.3e-06 54.7 96 35.4


User provided reference genes

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