Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G043800 Carya illinoinensis HOM05D005666 ORTHO05D007183 0.0e+00 1366.3 690 100.0
QL02p074714 Quercus lobata HOM05D005666 ORTHO05D007183 0.0e+00 1087.4 715 77.8
Haze_10618 Corylus avellana HOM05D005666 ORTHO05D007183 1.1e-308 1062.8 695 78.4
MD17G1027000 Malus domestica HOM05D005666 ORTHO05D007183 1.4e-277 959.5 718 68.5
Potri.001G345200 Populus trichocarpa HOM05D005666 ORTHO05D007183 2.9e-275 951.8 719 65.9
MD09G1027000 Malus domestica HOM05D005666 ORTHO05D007183 3.2e-274 948.3 718 68.1
RcHm_v2.0_Chr2g0172791 Rosa chinensis HOM05D005666 ORTHO05D007183 4.6e-273 944.5 741 65.0
CANSAT64G2468 Cannabis sativa HOM05D005666 ORTHO05D007183 2.3e-272 942.2 718 66.9
Manes.17G112200 Manihot esculenta HOM05D005666 ORTHO05D007183 2.5e-271 938.7 715 67.0
Duzib147G1248 Durio zibethinus HOM05D005666 ORTHO05D007183 5.6e-271 937.6 713 68.2
Gorai.012G064300 Gossypium raimondii HOM05D005666 ORTHO05D007183 5.6e-271 937.6 712 67.6
Sabra16G0224200 Salix brachista HOM05D005666 ORTHO05D007183 1.2e-270 936.4 719 65.8
GSVIVG01032407001 Vitis vinifera HOM05D005666 ORTHO05D007183 3.6e-270 934.9 714 67.4
Atru.chr6.2394 Acer truncatum HOM05D005666 ORTHO05D007183 1.1e-269 933.3 722 66.9
Cpa.g.sc130.81 Carica papaya HOM05D005666 ORTHO05D007183 1.1e-269 933.3 716 66.9
Gohir.D04G057600 Gossypium hirsutum HOM05D005666 ORTHO05D007183 2.3e-269 932.2 712 67.1
Actinidia35772 Actinidia chinensis HOM05D005666 ORTHO05D007183 1.3e-267 926.4 715 66.3
Prupe.3G291700 Prunus persica HOM05D005666 ORTHO05D007183 6.4e-267 924.1 652 71.0
FAN14G3607 Fragaria x ananassa HOM05D005666 ORTHO05D007183 7.0e-266 920.6 740 63.8
Hma1.2p1_0999F.1_g246210 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 9.2e-266 920.2 713 66.1
FAN02G4175 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.0e-264 916.8 749 63.2
TAR371G0349 Trochodendron aralioides HOM05D005666 ORTHO05D007183 2.3e-264 915.6 715 65.5
COL.COLO4_29116 Corchorus olitorius HOM05D005666 ORTHO05D007183 5.1e-264 914.4 745 65.5
FAN09G4801 Fragaria x ananassa HOM05D005666 ORTHO05D007183 2.5e-263 912.1 740 63.1
Rhsim10G0213300 Rhododendron simsii HOM05D005666 ORTHO05D007183 7.3e-263 910.6 710 64.9
FAN05G0542 Fragaria x ananassa HOM05D005666 ORTHO05D007183 8.1e-262 907.1 752 62.5
TWI56G0621 Tripterygium wilfordii HOM05D005666 ORTHO05D007183 1.1e-261 906.7 719 64.8
CsaV3_5G027130 Cucumis sativus L. HOM05D005666 ORTHO05D007183 7.5e-260 900.6 717 61.8
Lalb_Chr12g0199101 Lupinus albus HOM05D005666 ORTHO05D007183 1.7e-259 899.4 717 63.7
Lj2g0025454 Lotus japonicus HOM05D005666 ORTHO05D007183 3.7e-259 898.3 704 64.8
Glyma.05G003600 Glycine max HOM05D005666 ORTHO05D007183 4.9e-259 897.9 717 63.3
TPR.G14074 Trifolium pratense HOM05D005666 ORTHO05D007183 8.3e-259 897.1 718 63.6
Gohir.A05G355700 Gossypium hirsutum HOM05D005666 ORTHO05D007183 1.1e-258 896.7 692 66.8
ClCG09G019260 Citrullus lanatus HOM05D005666 ORTHO05D007183 9.2e-258 893.6 717 62.2
Thecc.04G017300 Theobroma cacao HOM05D005666 ORTHO05D007183 2.7e-257 892.1 712 64.9
vmacro18287 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 1.3e-256 889.8 714 64.4
MELO3C021580.2 Cucumis melo HOM05D005666 ORTHO05D007183 8.6e-256 887.1 715 61.4
Phvul.004G006900 Phaseolus vulgaris HOM05D005666 ORTHO05D007183 8.1e-254 880.6 717 62.5
Eucgr.L01920 Eucalyptus grandis HOM05D005666 ORTHO05D007183 2.0e-252 875.9 712 62.8
Sed0018750 Sechium edule HOM05D005666 ORTHO05D007183 2.6e-252 875.5 716 61.3
Lalb_Chr13g0300491 Lupinus albus HOM05D005666 ORTHO05D007183 5.8e-252 874.4 717 61.9
Ciclev10014455m.g Citrus clementina HOM05D005666 ORTHO05D007183 1.9e-250 869.4 716 64.5
VMungo0464G0315 Vigna mungo HOM05D005666 ORTHO05D007183 6.0e-249 864.4 717 61.9
Medtr8g094170 Medicago truncatula HOM05D005666 ORTHO05D007183 1.0e-248 863.6 708 62.1
Ca_04159_v3 Cicer arietinum L. HOM05D005666 ORTHO05D007183 3.3e-247 858.6 698 62.3
PGR083G1531 Punica granatum HOM05D005666 ORTHO05D007183 1.2e-246 856.7 709 61.9
Rhsim08G0049000 Rhododendron simsii HOM05D005666 ORTHO05D007183 9.0e-245 850.5 695 63.0
FvH4_6g51190 Fragaria vesca HOM05D005666 ORTHO05D007183 2.6e-244 849.0 683 62.8
arahy.Tifrunner.gnm1.ann1.XQUA9L Arachis hypogaea HOM05D005666 ORTHO05D007183 9.9e-244 847.0 717 60.5
AUR62026681 Chenopodium quinoa HOM05D005666 ORTHO05D007183 5.1e-240 834.7 715 59.4
Cc07_g01670 Coffea canephora HOM05D005666 ORTHO05D007183 7.3e-239 830.9 714 60.4
CSS0006540 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 1.3e-238 830.1 652 64.1
CAN.G1057.3 Capsicum annuum HOM05D005666 ORTHO05D007183 1.8e-237 826.2 717 59.3
PGSC0003DMG400006959 Solanum tuberosum HOM05D005666 ORTHO05D007183 9.0e-237 823.9 717 59.7
Sc03g0007440 Simmondsia chinensis HOM05D005666 ORTHO05D007183 2.4e-234 815.8 713 59.5
Sopen02g016930 Solanum pennellii HOM05D005666 ORTHO05D007183 9.3e-234 813.9 726 58.3
Migut.K01395 Erythranthe guttata HOM05D005666 ORTHO05D007183 2.7e-233 812.4 719 60.4
Aqoxy3G01199 Aquilegia oxysepala HOM05D005666 ORTHO05D007183 6.0e-233 811.2 723 58.5
Glyma.19G004600 Glycine max HOM05D005666 ORTHO05D007183 1.8e-232 809.7 651 62.1
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 5.6e-231 804.7 699 59.7
Nitab4.5_0008365g0020 Nicotiana tabacum HOM05D005666 ORTHO05D007183 5.6e-231 804.7 720 57.9
Nn3g16730 Nelumbo nucifera HOM05D005666 ORTHO05D007183 9.6e-231 803.9 699 59.5
PSO017G6377 Papaver somniferum HOM05D005666 ORTHO05D007183 1.6e-230 803.1 715 58.5
SalBow7G2092 Salvia bowleyana HOM05D005666 ORTHO05D007183 1.2e-228 797.0 719 58.3
PSO478G0823 Papaver somniferum HOM05D005666 ORTHO05D007183 3.4e-228 795.4 715 57.9
Hund22837 Selenicereus undatus HOM05D005666 ORTHO05D007183 3.4e-228 795.4 720 57.2
Ah.05g168070 Amaranthus hybridus HOM05D005666 ORTHO05D007183 4.9e-227 791.6 715 55.5
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 4.9e-227 791.6 673 62.6
DCAR_027499 Daucus carota HOM05D005666 ORTHO05D007183 6.4e-227 791.2 679 59.5
ECA246G2761 Erigeron canadensis HOM05D005666 ORTHO05D007183 1.9e-226 789.6 715 58.3
Thhalv10012831m.g Eutrema salsugineum HOM05D005666 ORTHO05D007183 1.5e-223 780.0 719 57.7
AL6G30550 Arabidopsis lyrata HOM05D005666 ORTHO05D007183 1.6e-222 776.5 711 58.1
AT5G19130 Arabidopsis thaliana HOM05D005666 ORTHO05D007183 2.1e-222 776.2 711 58.2
Hma1.2p1_0999F.1_g246220 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 8.2e-222 774.2 603 65.7
BcaB08g36600 Brassica carinata HOM05D005666 ORTHO05D007183 1.8e-221 773.1 716 57.1
BraA10t44118Z Brassica rapa HOM05D005666 ORTHO05D007183 3.4e-220 768.8 711 57.5
Solyc02g067820.4 Solanum lycopersicum HOM05D005666 ORTHO05D007183 3.4e-220 768.8 688 58.4
Sp6g25230 Schrenkiella parvula HOM05D005666 ORTHO05D007183 2.9e-219 765.8 711 57.4
SGA_v2.0_scaffold47G17503 Striga asiatica HOM05D005666 ORTHO05D007183 4.9e-219 765.0 716 57.5
C09p57110 Brassica napus HOM05D005666 ORTHO05D007183 6.5e-219 764.6 711 57.2
Aa31LG11G15280 Aethionema arabicum HOM05D005666 ORTHO05D007183 2.5e-218 762.7 710 57.0
BolC9t58577H Brassica oleracea HOM05D005666 ORTHO05D007183 4.2e-218 761.9 711 57.1
Carub.0006s1746 Capsella rubella HOM05D005666 ORTHO05D007183 7.1e-218 761.1 711 57.1
BcaC04g18594 Brassica carinata HOM05D005666 ORTHO05D007183 1.6e-217 760.0 711 57.1
A10p20490 Brassica napus HOM05D005666 ORTHO05D007183 1.6e-217 760.0 711 57.0
Nitab4.5_0002529g0030 Nicotiana tabacum HOM05D005666 ORTHO05D007183 2.7e-217 759.2 699 57.5
HanXRQChr15g0475291 Helianthus annuus HOM05D005666 ORTHO05D007183 3.5e-217 758.8 714 56.4
Lju41A42G100 Lonicera japonica HOM05D005666 ORTHO05D007183 4.6e-217 758.4 623 62.6
Psat1g054440 Pisum sativum HOM05D005666 ORTHO05D007183 1.8e-216 756.5 615 62.8
FAN05G2905 Fragaria x ananassa HOM05D005666 ORTHO05D007183 2.9e-211 739.2 639 61.5
DCAR_011253 Daucus carota HOM05D005666 ORTHO05D007183 3.8e-211 738.8 783 51.9
EL10Ac1g01578 Beta vulgaris HOM05D005666 ORTHO05D007183 5.0e-211 738.4 733 52.8
Peaxi162Scf00080g00117 Petunia axillaris HOM05D005666 ORTHO05D007183 1.9e-210 736.5 710 55.5
HanXRQChr17g0548481 Helianthus annuus HOM05D005666 ORTHO05D007183 7.2e-210 734.6 714 55.2
MBI16_g31718_MAGBIO Magnolia biondii HOM05D005666 ORTHO05D007183 2.5e-207 726.1 720 55.6
Lsat_1_v5_gn_0_47721 Lactuca sativa HOM05D005666 ORTHO05D007183 3.8e-203 712.2 693 55.4
CDE05G2460 Ceratophyllum demersum HOM05D005666 ORTHO05D007183 2.6e-196 689.5 718 52.4
CSS0011984 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 4.5e-196 688.7 602 60.1
THA.LOC104824726 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 4.7e-193 678.7 710 53.2
Oeu048621.1 Olea europaea HOM05D005666 ORTHO05D007183 3.3e-191 672.5 619 57.7
Zm00001eb156580 Zea mays HOM05D005666 ORTHO05D007183 1.0e-187 661.0 715 50.3
HPP92_013793 Vanilla planifolia HOM05D005666 ORTHO05D007183 1.2e-183 647.5 679 53.3
Eucgr.J02243 Eucalyptus grandis HOM05D005666 ORTHO05D007183 4.4e-183 645.6 520 63.7
Actinidia16943 Actinidia chinensis HOM05D005666 ORTHO05D007183 1.1e-178 630.9 612 56.2
unitig_747.g21863 Utricularia gibba HOM05D005666 ORTHO05D007183 1.0e-176 624.4 716 49.6
ATR0686G164 Amborella trichopoda HOM05D005666 ORTHO05D007183 4.1e-165 585.9 615 50.7
CSS0008870 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 2.0e-151 540.4 421 66.3
vmacro06910 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 1.6e-148 530.8 533 56.7
CARHR193820 Cardamine hirsuta HOM05D005666 ORTHO05D007183 6.6e-147 525.4 506 55.9
BcaB05g23370 Brassica carinata HOM05D005666 ORTHO05D007183 1.7e-139 500.7 702 45.9
AUR62040590 Chenopodium quinoa HOM05D005666 ORTHO05D007183 1.7e-131 474.2 424 57.3
Mapoly0008s0195 Marchantia polymorpha HOM05D005666 ORTHO05D007183 6.5e-110 402.5 748 35.7
AagrBONN_evm.TU.Sc2ySwM_344.4982 Anthoceros agrestis HOM05D005666 ORTHO05D007183 6.0e-108 396.0 778 34.8
SMO134G0274 Selaginella moellendorffii HOM05D005666 ORTHO05D007183 1.0e-99 368.6 727 34.9
Pp3c22_6140 Physcomitrium patens HOM05D005666 ORTHO05D007183 1.3e-86 325.1 487 40.0
THA.LOC109116951 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 6.7e-83 312.8 302 57.9
ATR0762G005 Amborella trichopoda HOM05D005666 ORTHO05D007183 3.5e-79 300.4 338 47.0
SEGI_39396 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 6.7e-75 286.2 330 46.1
SHI16418 Sapria himalayana HOM05D005666 ORTHO05D007183 2.4e-64 251.1 288 50.7
ATR0919G001 Amborella trichopoda HOM05D005666 ORTHO05D007183 9.4e-61 239.2 224 54.5
TPR.G20372 Trifolium pratense HOM05D005666 ORTHO05D007183 1.8e-51 208.4 166 62.7
Os01g0682200 Oryza sativa ssp. japonica HOM05D005666 ORTHO05D007183 1.5e-50 205.3 254 43.3
SHI16416 Sapria himalayana HOM05D005666 ORTHO05D007183 1.5e-42 178.7 272 41.5
THA.LOC104820325 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 5.6e-37 160.2 155 56.8
CBR_g49194 Chara braunii HOM05D005666 ORTHO05D007183 1.3e-33 149.1 432 28.7
Oeu030978.1 Olea europaea HOM05D005666 ORTHO05D007183 5.1e-30 137.1 118 61.9
MCO10G117 Micromonas commoda HOM05D005666 ORTHO05D007183 9.9e-26 122.9 666 24.5
A02p05250 Brassica napus HOM05D005666 ORTHO05D007183 2.4e-24 118.2 306 31.7
Oeu048620.1 Olea europaea HOM05D005666 ORTHO05D007183 2.7e-23 114.8 91 62.6
CiPaw.04G028500 Carya illinoinensis HOM05D005666 ORTHO05D007183 5.6e-21 107.1 64 84.4
Thecc.05G064500 Theobroma cacao HOM05D005666 ORTHO05D007183 1.2e-15 89.4 101 45.5
SEGI_03684 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 8.7e-14 83.2 88 52.3
BolC2t06938H Brassica oleracea HOM05D005666 ORTHO05D043081 7.3e-13 80.1 60 66.7
FvH4_6g51172 Fragaria vesca HOM05D005666 ORTHO05D007183 2.8e-12 78.2 59 71.2


User provided reference genes

Program Settings